EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000013157 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: rbm4l|wu:fc25a01
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 5923 bases
Position: chrPEQF01099173.1:909037-914959
Accession: 111667922
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000016586	zf-CCHC	PF00098.23	4.1e-06	1	1
ENSSLDP00000016586	RRM_5	PF13893.6	6.2e-08	1	1
ENSSLDP00000016586	RRM_1	PF00076.22	7.9e-29	1	2
ENSSLDP00000016586	RRM_1	PF00076.22	7.9e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000017184	-	3890	XM_023423779	ENSSLDP00000016586	385 (aa)	XP_023279547	UPI000C6F9F02

Gene Model

Click here to download ENSSLDG00000013157's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000013157's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000013157	-	99	48.724	ENSSLDG00000013147	rbm4.1	97	49.757
ENSSLDG00000013157	-	99	40.665	ENSSLDG00000017182	rbm4.3	51	48.588

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000013157	-	97	50.718	ENSAPOG00000012353	rbm4.1	95	49.755	Acanthochromis_polyacanthus
ENSSLDG00000013157	-	99	49.764	ENSACIG00000016482	rbm4.1	97	49.398	Amphilophus_citrinellus
ENSSLDG00000013157	-	97	51.196	ENSAOCG00000010915	rbm4.1	95	49.755	Amphiprion_ocellaris
ENSSLDG00000013157	-	97	51.196	ENSAPEG00000009494	rbm4.1	95	49.755	Amphiprion_percula
ENSSLDG00000013157	-	99	50.117	ENSATEG00000001904	rbm4.1	97	50.358	Anabas_testudineus
ENSSLDG00000013157	-	99	49.176	ENSACLG00000007722	rbm4.1	97	49.398	Astatotilapia_calliptera
ENSSLDG00000013157	-	100	76.486	ENSACLG00000007740	-	100	73.902	Astatotilapia_calliptera
ENSSLDG00000013157	-	99	54.780	ENSAMXG00000036611	rbm4.1	94	52.520	Astyanax_mexicanus
ENSSLDG00000013157	-	100	77.835	ENSCSEG00000014359	-	100	77.062	Cynoglossus_semilaevis
ENSSLDG00000013157	-	99	49.057	ENSCSEG00000014365	rbm4.1	99	48.571	Cynoglossus_semilaevis
ENSSLDG00000013157	-	94	50.617	ENSCVAG00000019349	rbm4.1	94	50.886	Cyprinodon_variegatus
ENSSLDG00000013157	-	99	54.094	ENSDARG00000055080	rbm4.2	99	53.616	Danio_rerio
ENSSLDG00000013157	-	99	52.267	ENSDARG00000036386	rbm4.1	79	71.014	Danio_rerio
ENSSLDG00000013157	-	50	56.410	ENSEBUG00000007174	-	97	55.747	Eptatretus_burgeri
ENSSLDG00000013157	-	97	51.620	ENSELUG00000013205	rbm4.1	78	55.247	Esox_lucius
ENSSLDG00000013157	-	94	51.122	ENSFHEG00000022926	rbm4.1	94	49.747	Fundulus_heteroclitus
ENSSLDG00000013157	-	99	47.765	ENSGMOG00000007464	rbm4.1	77	49.695	Gadus_morhua
ENSSLDG00000013157	-	100	71.649	ENSGMOG00000007455	-	100	72.237	Gadus_morhua
ENSSLDG00000013157	-	94	52.393	ENSGAFG00000019302	rbm4.1	94	52.393	Gambusia_affinis
ENSSLDG00000013157	-	100	80.000	ENSGACG00000000821	-	100	78.701	Gasterosteus_aculeatus
ENSSLDG00000013157	-	97	50.478	ENSGACG00000000822	rbm4.1	95	49.600	Gasterosteus_aculeatus
ENSSLDG00000013157	-	99	49.176	ENSHBUG00000011610	rbm4.1	97	49.398	Haplochromis_burtoni
ENSSLDG00000013157	-	92	48.964	ENSHCOG00000011403	rbm4.1	80	50.784	Hippocampus_comes
ENSSLDG00000013157	-	99	49.324	ENSIPUG00000022931	rbm4.1	99	48.821	Ictalurus_punctatus
ENSSLDG00000013157	-	94	56.065	ENSIPUG00000022937	rbm4.2	97	53.488	Ictalurus_punctatus
ENSSLDG00000013157	-	99	50.000	ENSKMAG00000006556	rbm4.1	95	49.747	Kryptolebias_marmoratus
ENSSLDG00000013157	-	100	61.165	ENSKMAG00000006528	-	100	63.391	Kryptolebias_marmoratus
ENSSLDG00000013157	-	100	81.606	ENSLBEG00000019756	-	100	79.016	Labrus_bergylta
ENSSLDG00000013157	-	99	48.730	ENSLBEG00000019782	rbm4.1	99	47.754	Labrus_bergylta
ENSSLDG00000013157	-	99	50.351	ENSMAMG00000001765	rbm4.1	97	49.403	Mastacembelus_armatus
ENSSLDG00000013157	-	100	84.456	ENSMAMG00000001760	-	100	84.456	Mastacembelus_armatus
ENSSLDG00000013157	-	99	49.176	ENSMZEG00005009205	rbm4.1	97	49.398	Maylandia_zebra
ENSSLDG00000013157	-	99	48.380	ENSMMOG00000020479	rbm4.1	97	49.403	Mola_mola
ENSSLDG00000013157	-	100	87.565	ENSMALG00000020557	-	100	85.492	Monopterus_albus
ENSSLDG00000013157	-	99	51.765	ENSMALG00000020544	rbm4.1	97	51.196	Monopterus_albus
ENSSLDG00000013157	-	99	49.176	ENSNBRG00000017755	rbm4.1	97	49.398	Neolamprologus_brichardi
ENSSLDG00000013157	-	99	49.412	ENSONIG00000015730	rbm4.1	97	49.639	Oreochromis_niloticus
ENSSLDG00000013157	-	100	48.394	ENSORLG00000012496	rbm4.1	100	47.775	Oryzias_latipes
ENSSLDG00000013157	-	100	48.394	ENSORLG00020012454	rbm4.1	100	47.775	Oryzias_latipes_hni
ENSSLDG00000013157	-	99	48.268	ENSORLG00015013678	rbm4.1	95	48.762	Oryzias_latipes_hsok
ENSSLDG00000013157	-	99	48.848	ENSOMEG00000001001	rbm4.1	99	48.201	Oryzias_melastigma
ENSSLDG00000013157	-	99	48.630	ENSPKIG00000020805	rbm4.1	85	70.290	Paramormyrops_kingsleyae
ENSSLDG00000013157	-	94	52.393	ENSPFOG00000012675	rbm4.1	94	52.010	Poecilia_formosa
ENSSLDG00000013157	-	100	67.089	ENSPFOG00000012685	-	100	65.394	Poecilia_formosa
ENSSLDG00000013157	-	94	52.393	ENSPLAG00000018572	rbm4.1	94	52.010	Poecilia_latipinna
ENSSLDG00000013157	-	94	52.393	ENSPMEG00000006290	rbm4.1	94	52.010	Poecilia_mexicana
ENSSLDG00000013157	-	100	63.010	ENSPREG00000003764	-	100	61.990	Poecilia_reticulata
ENSSLDG00000013157	-	94	52.393	ENSPREG00000003724	rbm4.1	94	52.010	Poecilia_reticulata
ENSSLDG00000013157	-	99	49.176	ENSPNYG00000004662	rbm4.1	97	49.398	Pundamilia_nyererei
ENSSLDG00000013157	-	99	56.234	ENSPNAG00000013057	rbm4.2	99	54.359	Pygocentrus_nattereri
ENSSLDG00000013157	-	99	53.828	ENSPNAG00000002539	rbm4.1	95	52.273	Pygocentrus_nattereri
ENSSLDG00000013157	-	99	50.119	ENSSMAG00000007571	rbm4.1	97	49.275	Scophthalmus_maximus
ENSSLDG00000013157	-	99	48.724	ENSSDUG00000003925	rbm4.1	97	49.757	Seriola_dumerili
ENSSLDG00000013157	-	100	98.182	ENSSDUG00000003936	-	100	98.182	Seriola_dumerili
ENSSLDG00000013157	-	100	81.865	ENSSPAG00000019046	-	100	80.052	Stegastes_partitus
ENSSLDG00000013157	-	99	49.766	ENSSPAG00000019053	rbm4.1	97	49.282	Stegastes_partitus
ENSSLDG00000013157	-	99	50.117	ENSTRUG00000013334	rbm4.1	97	47.470	Takifugu_rubripes
ENSSLDG00000013157	-	100	74.611	ENSTRUG00000013328	-	100	73.575	Takifugu_rubripes
ENSSLDG00000013157	-	100	73.834	ENSTNIG00000000316	-	100	72.798	Tetraodon_nigroviridis
ENSSLDG00000013157	-	94	49.864	ENSTNIG00000004821	rbm4.1	58	68.063	Tetraodon_nigroviridis
ENSSLDG00000013157	-	83	45.625	ENSXETG00000026649	rbm4b	74	44.746	Xenopus_tropicalis
ENSSLDG00000013157	-	94	52.393	ENSXCOG00000003731	rbm4.1	94	52.010	Xiphophorus_couchianus
ENSSLDG00000013157	-	94	52.393	ENSXMAG00000008069	rbm4.1	94	52.010	Xiphophorus_maculatus
ENSSLDG00000013157	-	100	66.244	ENSXMAG00000008059	-	100	64.541	Xiphophorus_maculatus