EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000013787 (Gene tree)
Gene ID: -
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 13362 bases
Position: chrPEQF01097434.1:246322-259683
Accession: 111650871
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000017486	ResIII	PF04851.15	3.6e-09	1	1
ENSSLDP00000017525	ResIII	PF04851.15	2.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000018134	-	2490	-	ENSSLDP00000017525	829 (aa)	-	-
ENSSLDT00000018095	-	3615	XM_023400819	ENSSLDP00000017486	944 (aa)	XP_023256587	UPI000C6FA724

Gene Model

Click here to download ENSSLDG00000013787's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000013787's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000013787	rad54b	66	44.482	ENSSLDG00000012330	rad54l	82	46.102
ENSSLDG00000013787	rad54b	57	31.707	ENSSLDG00000012714	chd1l	50	31.898
ENSSLDG00000013787	rad54b	62	30.205	ENSSLDG00000014910	ercc6l	50	31.763

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000013787	rad54b	84	54.297	ENSG00000265817	FSBP	99	59.147	Homo_sapiens
ENSSLDG00000013787	rad54b	99	53.895	ENSG00000197275	RAD54B	99	53.846	Homo_sapiens
ENSSLDG00000013787	rad54b	99	54.162	ENSAMEG00000005834	-	99	54.162	Ailuropoda_melanoleuca
ENSSLDG00000013787	rad54b	100	81.229	ENSACIG00000013005	rad54b	95	89.029	Amphilophus_citrinellus
ENSSLDG00000013787	rad54b	100	85.608	ENSAOCG00000008523	rad54b	100	85.608	Amphiprion_ocellaris
ENSSLDG00000013787	rad54b	100	76.923	ENSAPEG00000001673	rad54b	100	76.923	Amphiprion_percula
ENSSLDG00000013787	rad54b	100	86.970	ENSATEG00000001527	rad54b	100	89.049	Anabas_testudineus
ENSSLDG00000013787	rad54b	99	56.663	ENSAPLG00000014366	-	99	56.768	Anas_platyrhynchos
ENSSLDG00000013787	rad54b	91	58.756	ENSACAG00000003671	-	98	61.139	Anolis_carolinensis
ENSSLDG00000013787	rad54b	73	55.832	ENSANAG00000019528	-	99	60.714	Aotus_nancymaae
ENSSLDG00000013787	rad54b	100	82.326	ENSACLG00000007826	rad54b	100	85.629	Astatotilapia_calliptera
ENSSLDG00000013787	rad54b	94	62.593	ENSAMXG00000039985	rad54b	96	67.491	Astyanax_mexicanus
ENSSLDG00000013787	rad54b	99	53.741	ENSBTAG00000000632	RAD54B	99	53.376	Bos_taurus
ENSSLDG00000013787	rad54b	84	34.795	WBGene00013792	Y116A8C.13	88	34.827	Caenorhabditis_elegans
ENSSLDG00000013787	rad54b	99	54.040	ENSCJAG00000000080	-	99	59.285	Callithrix_jacchus
ENSSLDG00000013787	rad54b	99	54.641	ENSCAFG00000009179	RAD54B	99	54.641	Canis_familiaris
ENSSLDG00000013787	rad54b	99	54.747	ENSCAFG00020012084	-	99	54.747	Canis_lupus_dingo
ENSSLDG00000013787	rad54b	99	53.530	ENSCHIG00000008230	-	99	53.530	Capra_hircus
ENSSLDG00000013787	rad54b	99	54.364	ENSTSYG00000013234	-	99	54.088	Carlito_syrichta
ENSSLDG00000013787	rad54b	99	53.733	ENSCPOG00000011643	-	99	53.911	Cavia_porcellus
ENSSLDG00000013787	rad54b	99	53.992	ENSCCAG00000011754	-	99	59.010	Cebus_capucinus
ENSSLDG00000013787	rad54b	99	53.830	ENSCATG00000030661	-	99	58.719	Cercocebus_atys
ENSSLDG00000013787	rad54b	99	53.977	ENSCLAG00000010476	-	99	53.911	Chinchilla_lanigera
ENSSLDG00000013787	rad54b	99	53.895	ENSCSAG00000012712	-	99	53.676	Chlorocebus_sabaeus
ENSSLDG00000013787	rad54b	99	57.188	ENSCPBG00000003204	-	98	58.209	Chrysemys_picta_bellii
ENSSLDG00000013787	rad54b	99	54.488	ENSCANG00000017939	-	99	59.642	Colobus_angolensis_palliatus
ENSSLDG00000013787	rad54b	99	52.667	ENSCGRG00001020184	Rad54b	94	58.883	Cricetulus_griseus_chok1gshd
ENSSLDG00000013787	rad54b	99	52.285	ENSCGRG00000016752	Rad54b	93	57.868	Cricetulus_griseus_crigri
ENSSLDG00000013787	rad54b	99	80.819	ENSCSEG00000001601	rad54b	99	85.153	Cynoglossus_semilaevis
ENSSLDG00000013787	rad54b	100	77.778	ENSCVAG00000009200	rad54b	100	77.778	Cyprinodon_variegatus
ENSSLDG00000013787	rad54b	99	61.682	ENSDARG00000092134	rad54b	99	69.579	Danio_rerio
ENSSLDG00000013787	rad54b	99	54.979	ENSDNOG00000015535	-	99	54.979	Dasypus_novemcinctus
ENSSLDG00000013787	rad54b	99	54.709	ENSDORG00000002492	Rad54b	99	52.520	Dipodomys_ordii
ENSSLDG00000013787	rad54b	87	57.022	ENSETEG00000010605	-	100	56.235	Echinops_telfairi
ENSSLDG00000013787	rad54b	99	46.597	ENSEBUG00000009104	rad54b	98	46.757	Eptatretus_burgeri
ENSSLDG00000013787	rad54b	91	55.069	ENSEASG00005004021	-	89	59.199	Equus_asinus_asinus
ENSSLDG00000013787	rad54b	99	54.097	ENSECAG00000021949	-	99	54.088	Equus_caballus
ENSSLDG00000013787	rad54b	83	50.932	ENSEEUG00000008056	-	72	50.932	Erinaceus_europaeus
ENSSLDG00000013787	rad54b	99	74.311	ENSELUG00000009287	rad54b	100	72.508	Esox_lucius
ENSSLDG00000013787	rad54b	99	54.346	ENSFCAG00000015513	-	99	59.566	Felis_catus
ENSSLDG00000013787	rad54b	99	56.335	ENSFALG00000005467	-	99	56.335	Ficedula_albicollis
ENSSLDG00000013787	rad54b	99	53.298	ENSFDAG00000020541	-	100	53.403	Fukomys_damarensis
ENSSLDG00000013787	rad54b	93	77.528	ENSFHEG00000014382	rad54b	91	80.742	Fundulus_heteroclitus
ENSSLDG00000013787	rad54b	91	78.030	ENSGMOG00000014774	rad54b	99	82.955	Gadus_morhua
ENSSLDG00000013787	rad54b	96	75.000	ENSGALG00000043597	RAD54B	90	75.000	Gallus_gallus
ENSSLDG00000013787	rad54b	99	82.609	ENSGAFG00000007901	rad54b	99	82.715	Gambusia_affinis
ENSSLDG00000013787	rad54b	99	80.106	ENSGACG00000009128	rad54b	99	79.810	Gasterosteus_aculeatus
ENSSLDG00000013787	rad54b	99	56.947	ENSGAGG00000018747	-	99	56.947	Gopherus_agassizii
ENSSLDG00000013787	rad54b	99	53.669	ENSGGOG00000023516	-	99	53.508	Gorilla_gorilla
ENSSLDG00000013787	rad54b	99	85.547	ENSHBUG00000016017	rad54b	99	85.547	Haplochromis_burtoni
ENSSLDG00000013787	rad54b	99	53.249	ENSHGLG00000008263	RAD54B	98	53.243	Heterocephalus_glaber_female
ENSSLDG00000013787	rad54b	99	52.332	ENSHGLG00100008108	-	98	52.599	Heterocephalus_glaber_male
ENSSLDG00000013787	rad54b	99	72.129	ENSHCOG00000004764	rad54b	98	77.104	Hippocampus_comes
ENSSLDG00000013787	rad54b	99	61.831	ENSIPUG00000018531	rad54b	99	61.626	Ictalurus_punctatus
ENSSLDG00000013787	rad54b	99	53.122	ENSSTOG00000010791	-	99	53.016	Ictidomys_tridecemlineatus
ENSSLDG00000013787	rad54b	99	53.165	ENSJJAG00000010314	Rad54b	99	51.209	Jaculus_jaculus
ENSSLDG00000013787	rad54b	100	75.203	ENSKMAG00000004744	rad54b	100	75.203	Kryptolebias_marmoratus
ENSSLDG00000013787	rad54b	86	58.722	ENSLACG00000000859	-	100	63.249	Latimeria_chalumnae
ENSSLDG00000013787	rad54b	99	63.854	ENSLOCG00000010100	rad54b	94	69.154	Lepisosteus_oculatus
ENSSLDG00000013787	rad54b	91	53.797	ENSLAFG00000015315	-	97	58.028	Loxodonta_africana
ENSSLDG00000013787	rad54b	99	53.725	ENSMFAG00000031629	-	99	58.904	Macaca_fascicularis
ENSSLDG00000013787	rad54b	99	53.725	ENSMMUG00000005659	-	99	53.838	Macaca_mulatta
ENSSLDG00000013787	rad54b	99	53.620	ENSMNEG00000016408	-	99	53.733	Macaca_nemestrina
ENSSLDG00000013787	rad54b	99	53.943	ENSMLEG00000006946	-	99	53.838	Mandrillus_leucophaeus
ENSSLDG00000013787	rad54b	100	81.456	ENSMAMG00000012269	rad54b	99	86.571	Mastacembelus_armatus
ENSSLDG00000013787	rad54b	100	85.275	ENSMZEG00005005281	rad54b	98	87.975	Maylandia_zebra
ENSSLDG00000013787	rad54b	99	55.929	ENSMGAG00000012024	-	99	55.929	Meleagris_gallopavo
ENSSLDG00000013787	rad54b	99	52.604	ENSMAUG00000013586	Rad54b	99	53.079	Mesocricetus_auratus
ENSSLDG00000013787	rad54b	99	52.294	ENSMICG00000000754	-	99	52.294	Microcebus_murinus
ENSSLDG00000013787	rad54b	99	52.174	ENSMOCG00000020035	Rad54b	99	52.174	Microtus_ochrogaster
ENSSLDG00000013787	rad54b	92	87.077	ENSMMOG00000003394	rad54b	97	87.077	Mola_mola
ENSSLDG00000013787	rad54b	91	54.741	ENSMODG00000007343	-	97	59.039	Monodelphis_domestica
ENSSLDG00000013787	rad54b	74	82.075	ENSMALG00000001520	rad54b	100	87.869	Monopterus_albus
ENSSLDG00000013787	rad54b	99	54.555	MGP_CAROLIEiJ_G0025810	Rad54b	99	54.008	Mus_caroli
ENSSLDG00000013787	rad54b	99	54.237	ENSMUSG00000078773	Rad54b	99	54.025	Mus_musculus
ENSSLDG00000013787	rad54b	99	54.131	MGP_PahariEiJ_G0023933	Rad54b	99	54.131	Mus_pahari
ENSSLDG00000013787	rad54b	99	54.316	MGP_SPRETEiJ_G0026758	Rad54b	99	54.105	Mus_spretus
ENSSLDG00000013787	rad54b	91	55.346	ENSMPUG00000008878	-	97	59.623	Mustela_putorius_furo
ENSSLDG00000013787	rad54b	99	53.741	ENSMLUG00000008953	-	99	53.389	Myotis_lucifugus
ENSSLDG00000013787	rad54b	99	53.537	ENSNGAG00000017537	Rad54b	99	53.537	Nannospalax_galili
ENSSLDG00000013787	rad54b	100	82.442	ENSNBRG00000013394	rad54b	100	85.511	Neolamprologus_brichardi
ENSSLDG00000013787	rad54b	99	53.782	ENSNLEG00000003062	-	99	58.824	Nomascus_leucogenys
ENSSLDG00000013787	rad54b	71	59.827	ENSMEUG00000012426	-	69	62.371	Notamacropus_eugenii
ENSSLDG00000013787	rad54b	83	70.455	ENSODEG00000002650	-	96	70.455	Octodon_degus
ENSSLDG00000013787	rad54b	99	54.382	ENSODEG00000019564	-	99	53.968	Octodon_degus
ENSSLDG00000013787	rad54b	100	86.123	ENSONIG00000006067	rad54b	100	86.123	Oreochromis_niloticus
ENSSLDG00000013787	rad54b	87	56.539	ENSOANG00000011348	-	99	60.530	Ornithorhynchus_anatinus
ENSSLDG00000013787	rad54b	99	54.316	ENSOCUG00000016478	-	99	54.000	Oryctolagus_cuniculus
ENSSLDG00000013787	rad54b	100	79.704	ENSORLG00000008918	rad54b	100	85.913	Oryzias_latipes
ENSSLDG00000013787	rad54b	68	86.068	ENSORLG00020012171	rad54b	100	86.068	Oryzias_latipes_hni
ENSSLDG00000013787	rad54b	100	79.197	ENSORLG00015018536	rad54b	100	79.197	Oryzias_latipes_hsok
ENSSLDG00000013787	rad54b	89	79.688	ENSOMEG00000004345	rad54b	100	84.217	Oryzias_melastigma
ENSSLDG00000013787	rad54b	99	52.526	ENSOGAG00000007854	-	99	52.632	Otolemur_garnettii
ENSSLDG00000013787	rad54b	91	55.332	ENSOARG00000007691	-	97	59.524	Ovis_aries
ENSSLDG00000013787	rad54b	99	52.731	ENSPPAG00000029572	-	99	52.571	Pan_paniscus
ENSSLDG00000013787	rad54b	99	53.983	ENSPPRG00000007571	-	99	59.294	Panthera_pardus
ENSSLDG00000013787	rad54b	84	54.953	ENSPTIG00000012670	-	99	59.294	Panthera_tigris_altaica
ENSSLDG00000013787	rad54b	99	53.669	ENSPTRG00000020427	-	99	58.687	Pan_troglodytes
ENSSLDG00000013787	rad54b	99	53.943	ENSPANG00000019566	-	99	53.943	Papio_anubis
ENSSLDG00000013787	rad54b	99	64.316	ENSPKIG00000014974	rad54b	99	63.789	Paramormyrops_kingsleyae
ENSSLDG00000013787	rad54b	99	56.751	ENSPSIG00000002383	-	95	62.343	Pelodiscus_sinensis
ENSSLDG00000013787	rad54b	99	53.277	ENSPEMG00000012133	Rad54b	93	59.217	Peromyscus_maniculatus_bairdii
ENSSLDG00000013787	rad54b	90	55.063	ENSPMAG00000002916	rad54b	98	58.913	Petromyzon_marinus
ENSSLDG00000013787	rad54b	91	56.122	ENSPCIG00000020151	-	91	59.114	Phascolarctos_cinereus
ENSSLDG00000013787	rad54b	99	82.222	ENSPFOG00000023411	rad54b	99	82.011	Poecilia_formosa
ENSSLDG00000013787	rad54b	99	82.011	ENSPLAG00000010430	rad54b	99	81.799	Poecilia_latipinna
ENSSLDG00000013787	rad54b	99	82.434	ENSPMEG00000016873	rad54b	99	83.565	Poecilia_mexicana
ENSSLDG00000013787	rad54b	99	82.857	ENSPREG00000018443	rad54b	99	82.857	Poecilia_reticulata
ENSSLDG00000013787	rad54b	99	53.676	ENSPPYG00000018750	-	99	53.515	Pongo_abelii
ENSSLDG00000013787	rad54b	99	54.008	ENSPCOG00000026845	-	99	58.767	Propithecus_coquereli
ENSSLDG00000013787	rad54b	86	53.652	ENSPVAG00000000261	-	86	58.167	Pteropus_vampyrus
ENSSLDG00000013787	rad54b	92	82.828	ENSPNYG00000018303	rad54b	97	85.750	Pundamilia_nyererei
ENSSLDG00000013787	rad54b	99	61.700	ENSPNAG00000000295	rad54b	99	61.368	Pygocentrus_nattereri
ENSSLDG00000013787	rad54b	99	53.862	ENSRNOG00000039949	Rad54b	99	53.757	Rattus_norvegicus
ENSSLDG00000013787	rad54b	99	54.211	ENSRBIG00000020419	-	99	53.943	Rhinopithecus_bieti
ENSSLDG00000013787	rad54b	99	54.211	ENSRROG00000039897	-	99	53.943	Rhinopithecus_roxellana
ENSSLDG00000013787	rad54b	89	34.982	YBR073W	RDH54	84	36.374	Saccharomyces_cerevisiae
ENSSLDG00000013787	rad54b	99	53.911	ENSSBOG00000028501	-	99	53.911	Saimiri_boliviensis_boliviensis
ENSSLDG00000013787	rad54b	99	54.449	ENSSHAG00000017038	-	99	54.189	Sarcophilus_harrisii
ENSSLDG00000013787	rad54b	66	67.430	ENSSFOG00015008483	rad54b	89	72.183	Scleropages_formosus
ENSSLDG00000013787	rad54b	99	88.771	ENSSMAG00000018659	rad54b	99	88.771	Scophthalmus_maximus
ENSSLDG00000013787	rad54b	97	99.021	ENSSDUG00000001122	rad54b	97	99.021	Seriola_dumerili
ENSSLDG00000013787	rad54b	99	55.879	ENSSPUG00000016497	-	95	61.290	Sphenodon_punctatus
ENSSLDG00000013787	rad54b	100	81.973	ENSSPAG00000012800	rad54b	100	81.973	Stegastes_partitus
ENSSLDG00000013787	rad54b	99	53.165	ENSSSCG00000006101	-	98	58.994	Sus_scrofa
ENSSLDG00000013787	rad54b	99	56.034	ENSTGUG00000011880	-	99	55.777	Taeniopygia_guttata
ENSSLDG00000013787	rad54b	100	80.529	ENSTRUG00000010015	rad54b	99	80.529	Takifugu_rubripes
ENSSLDG00000013787	rad54b	99	49.895	ENSTTRG00000006312	-	99	48.415	Tursiops_truncatus
ENSSLDG00000013787	rad54b	99	54.211	ENSUMAG00000016401	-	99	54.211	Ursus_maritimus
ENSSLDG00000013787	rad54b	99	51.196	ENSVPAG00000003157	-	99	51.196	Vicugna_pacos
ENSSLDG00000013787	rad54b	99	49.944	ENSXETG00000025924	rad54b	98	53.292	Xenopus_tropicalis
ENSSLDG00000013787	rad54b	97	84.512	ENSXMAG00000013141	rad54b	98	86.486	Xiphophorus_maculatus