EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000014261 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 6228 bases
Position: chrPEQF01099385.1:349043-355270
Accession: 111672986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000018134	PPR	PF01535.20	1.6e-16	1	2
ENSSLDP00000018134	PPR	PF01535.20	1.6e-16	2	2
ENSSLDP00000018151	PPR	PF01535.20	2.7e-14	1	2
ENSSLDP00000018151	PPR	PF01535.20	2.7e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000018751	-	2094	XM_023430592	ENSSLDP00000018134	697 (aa)	XP_023286360	-
ENSSLDT00000018768	-	2028	-	ENSSLDP00000018151	675 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000014261's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000014261's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000014261	ptcd1	86	46.955	ENSG00000248919	ATP5MF-PTCD1	82	46.975	Homo_sapiens
ENSSLDG00000014261	ptcd1	86	46.955	ENSG00000106246	PTCD1	88	46.975	Homo_sapiens
ENSSLDG00000014261	ptcd1	91	67.652	ENSAPOG00000010679	ptcd1	96	67.652	Acanthochromis_polyacanthus
ENSSLDG00000014261	ptcd1	86	49.595	ENSAMEG00000006224	-	79	49.595	Ailuropoda_melanoleuca
ENSSLDG00000014261	ptcd1	97	74.057	ENSACIG00000017861	ptcd1	98	74.057	Amphilophus_citrinellus
ENSSLDG00000014261	ptcd1	91	68.740	ENSAOCG00000022617	ptcd1	94	68.740	Amphiprion_ocellaris
ENSSLDG00000014261	ptcd1	96	69.436	ENSAOCG00000020741	-	93	69.436	Amphiprion_ocellaris
ENSSLDG00000014261	ptcd1	96	69.585	ENSAPEG00000022632	ptcd1	93	69.585	Amphiprion_percula
ENSSLDG00000014261	ptcd1	99	72.230	ENSATEG00000007016	ptcd1	96	72.518	Anabas_testudineus
ENSSLDG00000014261	ptcd1	83	49.744	ENSAPLG00000006862	-	91	50.596	Anas_platyrhynchos
ENSSLDG00000014261	ptcd1	86	48.377	ENSACAG00000012871	-	80	48.377	Anolis_carolinensis
ENSSLDG00000014261	ptcd1	83	47.980	ENSANAG00000035790	-	86	48.495	Aotus_nancymaae
ENSSLDG00000014261	ptcd1	99	70.528	ENSACLG00000002824	ptcd1	93	72.904	Astatotilapia_calliptera
ENSSLDG00000014261	ptcd1	86	50.466	ENSAMXG00000037292	ptcd1	90	49.770	Astyanax_mexicanus
ENSSLDG00000014261	ptcd1	93	45.401	ENSBTAG00000020440	-	82	46.508	Bos_taurus
ENSSLDG00000014261	ptcd1	86	47.994	ENSCJAG00000015815	-	87	48.006	Callithrix_jacchus
ENSSLDG00000014261	ptcd1	97	45.299	ENSCAFG00000015055	-	91	45.299	Canis_familiaris
ENSSLDG00000014261	ptcd1	92	46.728	ENSCAFG00020014480	-	86	46.728	Canis_lupus_dingo
ENSSLDG00000014261	ptcd1	93	45.573	ENSCHIG00000027000	-	95	45.573	Capra_hircus
ENSSLDG00000014261	ptcd1	94	44.461	ENSTSYG00000029495	-	96	44.606	Carlito_syrichta
ENSSLDG00000014261	ptcd1	83	47.651	ENSCAPG00000014660	-	90	47.682	Cavia_aperea
ENSSLDG00000014261	ptcd1	95	45.322	ENSCPOG00000001780	-	95	45.468	Cavia_porcellus
ENSSLDG00000014261	ptcd1	86	47.961	ENSCCAG00000034025	-	87	47.974	Cebus_capucinus
ENSSLDG00000014261	ptcd1	83	48.727	ENSCATG00000040859	-	84	48.904	Cercocebus_atys
ENSSLDG00000014261	ptcd1	95	45.974	ENSCLAG00000006354	-	96	45.809	Chinchilla_lanigera
ENSSLDG00000014261	ptcd1	79	47.679	ENSCSAG00000017794	-	83	47.872	Chlorocebus_sabaeus
ENSSLDG00000014261	ptcd1	85	47.752	ENSCPBG00000020866	-	86	47.752	Chrysemys_picta_bellii
ENSSLDG00000014261	ptcd1	88	46.406	ENSCANG00000023441	-	90	45.652	Colobus_angolensis_palliatus
ENSSLDG00000014261	ptcd1	94	45.441	ENSCGRG00001023686	Ptcd1	94	45.889	Cricetulus_griseus_chok1gshd
ENSSLDG00000014261	ptcd1	94	45.374	ENSCGRG00000015031	Ptcd1	94	45.668	Cricetulus_griseus_crigri
ENSSLDG00000014261	ptcd1	96	62.388	ENSCSEG00000002378	ptcd1	92	62.687	Cynoglossus_semilaevis
ENSSLDG00000014261	ptcd1	96	66.220	ENSCVAG00000003621	ptcd1	99	66.220	Cyprinodon_variegatus
ENSSLDG00000014261	ptcd1	95	67.825	ENSCVAG00000015826	ptcd1	91	67.825	Cyprinodon_variegatus
ENSSLDG00000014261	ptcd1	87	53.081	ENSDARG00000076176	ptcd1	89	53.081	Danio_rerio
ENSSLDG00000014261	ptcd1	83	48.054	ENSDNOG00000009957	-	96	45.508	Dasypus_novemcinctus
ENSSLDG00000014261	ptcd1	95	44.756	ENSDORG00000000740	Ptcd1	96	45.347	Dipodomys_ordii
ENSSLDG00000014261	ptcd1	82	38.400	ENSEBUG00000014515	ptcd1	93	38.587	Eptatretus_burgeri
ENSSLDG00000014261	ptcd1	93	44.934	ENSEASG00005002480	-	94	45.870	Equus_asinus_asinus
ENSSLDG00000014261	ptcd1	93	44.428	ENSECAG00000016617	-	94	45.333	Equus_caballus
ENSSLDG00000014261	ptcd1	98	54.309	ENSELUG00000016517	ptcd1	98	53.206	Esox_lucius
ENSSLDG00000014261	ptcd1	94	45.918	ENSFCAG00000015069	-	96	45.918	Felis_catus
ENSSLDG00000014261	ptcd1	83	46.952	ENSFALG00000013803	-	87	46.594	Ficedula_albicollis
ENSSLDG00000014261	ptcd1	86	47.068	ENSFDAG00000006393	-	87	47.847	Fukomys_damarensis
ENSSLDG00000014261	ptcd1	73	73.190	ENSFHEG00000012491	ptcd1	88	73.190	Fundulus_heteroclitus
ENSSLDG00000014261	ptcd1	84	63.105	ENSGMOG00000007639	ptcd1	94	63.105	Gadus_morhua
ENSSLDG00000014261	ptcd1	83	46.546	ENSGALG00000004711	-	83	48.440	Gallus_gallus
ENSSLDG00000014261	ptcd1	86	70.764	ENSGAFG00000013175	ptcd1	90	66.929	Gambusia_affinis
ENSSLDG00000014261	ptcd1	87	69.672	ENSGACG00000016607	ptcd1	92	72.621	Gasterosteus_aculeatus
ENSSLDG00000014261	ptcd1	81	46.477	ENSGAGG00000021832	-	89	46.602	Gopherus_agassizii
ENSSLDG00000014261	ptcd1	86	46.795	ENSGGOG00000015123	-	88	46.815	Gorilla_gorilla
ENSSLDG00000014261	ptcd1	99	70.968	ENSHBUG00000018275	ptcd1	93	73.353	Haplochromis_burtoni
ENSSLDG00000014261	ptcd1	87	47.504	ENSHGLG00000017621	-	87	47.987	Heterocephalus_glaber_female
ENSSLDG00000014261	ptcd1	87	47.504	ENSHGLG00100007218	-	87	47.987	Heterocephalus_glaber_male
ENSSLDG00000014261	ptcd1	97	57.887	ENSHCOG00000010784	ptcd1	94	60.301	Hippocampus_comes
ENSSLDG00000014261	ptcd1	87	47.792	ENSSTOG00000001682	-	88	47.792	Ictidomys_tridecemlineatus
ENSSLDG00000014261	ptcd1	88	47.709	ENSJJAG00000000319	Ptcd1	89	47.771	Jaculus_jaculus
ENSSLDG00000014261	ptcd1	96	67.910	ENSKMAG00000008708	ptcd1	92	67.910	Kryptolebias_marmoratus
ENSSLDG00000014261	ptcd1	99	67.677	ENSLBEG00000008061	ptcd1	93	70.571	Labrus_bergylta
ENSSLDG00000014261	ptcd1	85	48.520	ENSLACG00000011172	ptcd1	84	48.849	Latimeria_chalumnae
ENSSLDG00000014261	ptcd1	89	50.375	ENSLOCG00000004833	ptcd1	97	50.079	Lepisosteus_oculatus
ENSSLDG00000014261	ptcd1	87	46.656	ENSLAFG00000002588	-	92	45.551	Loxodonta_africana
ENSSLDG00000014261	ptcd1	83	48.316	ENSMFAG00000041324	-	84	48.495	Macaca_fascicularis
ENSSLDG00000014261	ptcd1	83	48.316	ENSMMUG00000030408	-	84	48.495	Macaca_mulatta
ENSSLDG00000014261	ptcd1	83	48.485	ENSMNEG00000043786	-	84	48.662	Macaca_nemestrina
ENSSLDG00000014261	ptcd1	83	36.678	ENSMLEG00000031179	-	81	42.440	Mandrillus_leucophaeus
ENSSLDG00000014261	ptcd1	99	72.914	ENSMAMG00000007623	ptcd1	92	75.373	Mastacembelus_armatus
ENSSLDG00000014261	ptcd1	99	70.528	ENSMZEG00005012722	ptcd1	93	72.904	Maylandia_zebra
ENSSLDG00000014261	ptcd1	87	46.730	ENSMGAG00000004211	-	81	47.536	Meleagris_gallopavo
ENSSLDG00000014261	ptcd1	93	42.669	ENSMICG00000017428	-	96	43.548	Microcebus_murinus
ENSSLDG00000014261	ptcd1	99	68.966	ENSMMOG00000020243	ptcd1	94	72.698	Mola_mola
ENSSLDG00000014261	ptcd1	86	43.949	ENSMODG00000001350	-	84	43.949	Monodelphis_domestica
ENSSLDG00000014261	ptcd1	99	75.000	ENSMALG00000018442	ptcd1	92	77.198	Monopterus_albus
ENSSLDG00000014261	ptcd1	91	45.820	MGP_CAROLIEiJ_G0028011	Ptcd1	91	46.594	Mus_caroli
ENSSLDG00000014261	ptcd1	91	45.356	ENSMUSG00000029624	Ptcd1	91	46.130	Mus_musculus
ENSSLDG00000014261	ptcd1	83	49.161	MGP_PahariEiJ_G0024580	Ptcd1	85	49.664	Mus_pahari
ENSSLDG00000014261	ptcd1	91	45.511	MGP_SPRETEiJ_G0029012	Ptcd1	91	46.130	Mus_spretus
ENSSLDG00000014261	ptcd1	95	46.608	ENSMPUG00000016518	-	95	47.198	Mustela_putorius_furo
ENSSLDG00000014261	ptcd1	92	46.233	ENSMLUG00000010994	-	88	46.815	Myotis_lucifugus
ENSSLDG00000014261	ptcd1	99	71.006	ENSNBRG00000010079	ptcd1	96	72.537	Neolamprologus_brichardi
ENSSLDG00000014261	ptcd1	81	44.158	ENSNLEG00000011060	-	96	44.158	Nomascus_leucogenys
ENSSLDG00000014261	ptcd1	86	45.177	ENSMEUG00000006930	-	87	45.177	Notamacropus_eugenii
ENSSLDG00000014261	ptcd1	77	53.191	ENSOPRG00000013647	-	78	53.191	Ochotona_princeps
ENSSLDG00000014261	ptcd1	83	73.137	ENSONIG00000003168	ptcd1	98	70.389	Oreochromis_niloticus
ENSSLDG00000014261	ptcd1	80	46.127	ENSOANG00000007728	-	75	46.127	Ornithorhynchus_anatinus
ENSSLDG00000014261	ptcd1	95	45.376	ENSOCUG00000010584	-	95	45.876	Oryctolagus_cuniculus
ENSSLDG00000014261	ptcd1	96	66.567	ENSORLG00000009275	ptcd1	96	66.567	Oryzias_latipes
ENSSLDG00000014261	ptcd1	96	66.816	ENSORLG00020000988	ptcd1	96	66.816	Oryzias_latipes_hni
ENSSLDG00000014261	ptcd1	96	66.168	ENSORLG00015010557	ptcd1	96	66.168	Oryzias_latipes_hsok
ENSSLDG00000014261	ptcd1	96	67.066	ENSOMEG00000020627	ptcd1	96	67.066	Oryzias_melastigma
ENSSLDG00000014261	ptcd1	87	45.008	ENSOGAG00000010877	-	89	45.008	Otolemur_garnettii
ENSSLDG00000014261	ptcd1	93	41.810	ENSOARG00000018676	-	96	41.810	Ovis_aries
ENSSLDG00000014261	ptcd1	86	46.635	ENSPPAG00000036024	-	88	46.656	Pan_paniscus
ENSSLDG00000014261	ptcd1	94	45.815	ENSPPRG00000003478	-	96	45.815	Panthera_pardus
ENSSLDG00000014261	ptcd1	86	46.955	ENSPTRG00000019452	-	88	46.975	Pan_troglodytes
ENSSLDG00000014261	ptcd1	83	48.485	ENSPANG00000016730	-	84	48.662	Papio_anubis
ENSSLDG00000014261	ptcd1	83	52.196	ENSPKIG00000014215	ptcd1	85	51.759	Paramormyrops_kingsleyae
ENSSLDG00000014261	ptcd1	83	47.927	ENSPSIG00000011184	-	99	48.259	Pelodiscus_sinensis
ENSSLDG00000014261	ptcd1	71	42.639	ENSPMAG00000009667	ptcd1	100	42.639	Petromyzon_marinus
ENSSLDG00000014261	ptcd1	86	44.268	ENSPCIG00000024778	-	89	43.373	Phascolarctos_cinereus
ENSSLDG00000014261	ptcd1	87	70.000	ENSPFOG00000004458	ptcd1	89	66.875	Poecilia_formosa
ENSSLDG00000014261	ptcd1	94	66.314	ENSPLAG00000011051	ptcd1	96	63.728	Poecilia_latipinna
ENSSLDG00000014261	ptcd1	87	70.213	ENSPMEG00000020547	ptcd1	89	67.085	Poecilia_mexicana
ENSSLDG00000014261	ptcd1	86	69.269	ENSPREG00000000059	ptcd1	89	66.878	Poecilia_reticulata
ENSSLDG00000014261	ptcd1	87	46.338	ENSPPYG00000017377	-	93	46.338	Pongo_abelii
ENSSLDG00000014261	ptcd1	76	58.915	ENSPCAG00000001852	-	83	58.915	Procavia_capensis
ENSSLDG00000014261	ptcd1	84	47.039	ENSPCOG00000018596	-	86	47.222	Propithecus_coquereli
ENSSLDG00000014261	ptcd1	64	48.611	ENSPVAG00000007529	-	68	48.611	Pteropus_vampyrus
ENSSLDG00000014261	ptcd1	99	70.674	ENSPNYG00000019993	ptcd1	93	73.054	Pundamilia_nyererei
ENSSLDG00000014261	ptcd1	87	52.885	ENSPNAG00000014931	ptcd1	92	52.160	Pygocentrus_nattereri
ENSSLDG00000014261	ptcd1	92	45.414	ENSRNOG00000000987	Ptcd1	94	46.466	Rattus_norvegicus
ENSSLDG00000014261	ptcd1	87	47.040	ENSRBIG00000043393	-	88	46.264	Rhinopithecus_bieti
ENSSLDG00000014261	ptcd1	87	47.258	ENSRROG00000036420	-	88	46.474	Rhinopithecus_roxellana
ENSSLDG00000014261	ptcd1	86	48.214	ENSSBOG00000024114	-	87	48.226	Saimiri_boliviensis_boliviensis
ENSSLDG00000014261	ptcd1	84	46.922	ENSSHAG00000011376	-	90	46.922	Sarcophilus_harrisii
ENSSLDG00000014261	ptcd1	86	51.613	ENSSFOG00015007909	ptcd1	81	53.719	Scleropages_formosus
ENSSLDG00000014261	ptcd1	86	75.726	ENSSMAG00000000218	ptcd1	94	75.980	Scophthalmus_maximus
ENSSLDG00000014261	ptcd1	100	96.889	ENSSDUG00000015671	ptcd1	100	96.889	Seriola_dumerili
ENSSLDG00000014261	ptcd1	83	46.191	ENSSPUG00000003540	-	83	46.166	Sphenodon_punctatus
ENSSLDG00000014261	ptcd1	99	70.306	ENSSPAG00000011049	ptcd1	92	72.700	Stegastes_partitus
ENSSLDG00000014261	ptcd1	85	48.270	ENSSSCG00000007622	-	91	48.136	Sus_scrofa
ENSSLDG00000014261	ptcd1	83	46.928	ENSTGUG00000007563	-	95	47.952	Taeniopygia_guttata
ENSSLDG00000014261	ptcd1	99	63.821	ENSTRUG00000013471	ptcd1	92	65.929	Takifugu_rubripes
ENSSLDG00000014261	ptcd1	98	61.739	ENSTNIG00000008271	ptcd1	96	64.106	Tetraodon_nigroviridis
ENSSLDG00000014261	ptcd1	93	44.748	ENSTBEG00000011021	-	96	44.748	Tupaia_belangeri
ENSSLDG00000014261	ptcd1	93	44.802	ENSTTRG00000003006	-	95	44.802	Tursiops_truncatus
ENSSLDG00000014261	ptcd1	86	48.710	ENSUAMG00000008049	-	85	48.710	Ursus_americanus
ENSSLDG00000014261	ptcd1	93	46.598	ENSVVUG00000008836	-	94	46.598	Vulpes_vulpes
ENSSLDG00000014261	ptcd1	83	47.386	ENSXETG00000009891	ptcd1	88	46.016	Xenopus_tropicalis
ENSSLDG00000014261	ptcd1	86	72.259	ENSXMAG00000015540	ptcd1	89	68.829	Xiphophorus_maculatus