EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000015486 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 9129 bases
Position: chrPEQF01099064.1:1142468-1151596
Accession: 111664282
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000019750	TruB_N	PF01509.18	5.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000020414	-	2205	XM_023418806	ENSSLDP00000019750	278 (aa)	XP_023274574	UPI000C6FC8C0

Gene Model

Click here to download ENSSLDG00000015486's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000015486's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000015486	trub1	88	69.512	ENSG00000165832	TRUB1	69	69.583	Homo_sapiens
ENSSLDG00000015486	trub1	94	88.168	ENSAPOG00000020565	trub1	100	84.892	Acanthochromis_polyacanthus
ENSSLDG00000015486	trub1	88	68.952	ENSAMEG00000014931	TRUB1	69	69.008	Ailuropoda_melanoleuca
ENSSLDG00000015486	trub1	99	81.159	ENSACIG00000003060	trub1	92	81.159	Amphilophus_citrinellus
ENSSLDG00000015486	trub1	94	88.550	ENSAOCG00000017188	trub1	100	85.252	Amphiprion_ocellaris
ENSSLDG00000015486	trub1	94	89.313	ENSAPEG00000015209	trub1	100	85.971	Amphiprion_percula
ENSSLDG00000015486	trub1	88	91.429	ENSATEG00000023291	trub1	85	91.949	Anabas_testudineus
ENSSLDG00000015486	trub1	88	69.672	ENSAPLG00000006808	TRUB1	86	69.456	Anas_platyrhynchos
ENSSLDG00000015486	trub1	88	66.939	ENSACAG00000009282	TRUB1	86	67.782	Anolis_carolinensis
ENSSLDG00000015486	trub1	88	69.512	ENSANAG00000022870	TRUB1	68	69.583	Aotus_nancymaae
ENSSLDG00000015486	trub1	98	84.615	ENSACLG00000000823	trub1	98	84.615	Astatotilapia_calliptera
ENSSLDG00000015486	trub1	90	80.080	ENSAMXG00000015845	trub1	81	80.498	Astyanax_mexicanus
ENSSLDG00000015486	trub1	88	70.732	ENSBTAG00000012955	TRUB1	68	70.833	Bos_taurus
ENSSLDG00000015486	trub1	88	69.512	ENSCJAG00000047815	TRUB1	68	69.583	Callithrix_jacchus
ENSSLDG00000015486	trub1	88	69.919	ENSCAFG00000011688	TRUB1	69	70.000	Canis_familiaris
ENSSLDG00000015486	trub1	88	69.919	ENSCAFG00020013237	TRUB1	69	70.000	Canis_lupus_dingo
ENSSLDG00000015486	trub1	88	69.919	ENSCHIG00000020884	TRUB1	72	70.000	Capra_hircus
ENSSLDG00000015486	trub1	88	67.886	ENSTSYG00000000446	TRUB1	68	68.333	Carlito_syrichta
ENSSLDG00000015486	trub1	82	59.130	ENSCAPG00000017088	TRUB1	90	59.130	Cavia_aperea
ENSSLDG00000015486	trub1	69	65.803	ENSCPOG00000030129	-	70	67.222	Cavia_porcellus
ENSSLDG00000015486	trub1	68	66.316	ENSCPOG00000040236	-	73	67.797	Cavia_porcellus
ENSSLDG00000015486	trub1	88	69.512	ENSCCAG00000028842	TRUB1	68	69.583	Cebus_capucinus
ENSSLDG00000015486	trub1	88	69.512	ENSCATG00000033431	TRUB1	69	69.583	Cercocebus_atys
ENSSLDG00000015486	trub1	66	66.667	ENSCLAG00000008664	TRUB1	73	66.667	Chinchilla_lanigera
ENSSLDG00000015486	trub1	88	69.512	ENSCSAG00000004891	TRUB1	69	69.583	Chlorocebus_sabaeus
ENSSLDG00000015486	trub1	87	61.728	ENSCHOG00000011931	TRUB1	68	61.603	Choloepus_hoffmanni
ENSSLDG00000015486	trub1	90	69.600	ENSCPBG00000003051	TRUB1	82	71.130	Chrysemys_picta_bellii
ENSSLDG00000015486	trub1	88	69.512	ENSCANG00000029445	TRUB1	69	69.583	Colobus_angolensis_palliatus
ENSSLDG00000015486	trub1	86	60.669	ENSCGRG00001010322	-	64	60.417	Cricetulus_griseus_chok1gshd
ENSSLDG00000015486	trub1	77	69.484	ENSCGRG00001016772	-	71	69.302	Cricetulus_griseus_chok1gshd
ENSSLDG00000015486	trub1	86	68.619	ENSCGRG00000010806	Trub1	73	68.333	Cricetulus_griseus_crigri
ENSSLDG00000015486	trub1	94	78.626	ENSCSEG00000011261	trub1	79	81.148	Cynoglossus_semilaevis
ENSSLDG00000015486	trub1	92	82.745	ENSCVAG00000008791	trub1	74	83.402	Cyprinodon_variegatus
ENSSLDG00000015486	trub1	90	76.707	ENSDARG00000053805	trub1	82	76.151	Danio_rerio
ENSSLDG00000015486	trub1	88	66.667	ENSDNOG00000001069	TRUB1	68	66.667	Dasypus_novemcinctus
ENSSLDG00000015486	trub1	86	68.619	ENSDORG00000010431	Trub1	69	68.333	Dipodomys_ordii
ENSSLDG00000015486	trub1	88	69.106	ENSEASG00005014739	TRUB1	69	69.167	Equus_asinus_asinus
ENSSLDG00000015486	trub1	88	69.106	ENSECAG00000007177	TRUB1	69	69.167	Equus_caballus
ENSSLDG00000015486	trub1	88	60.569	ENSEEUG00000013993	TRUB1	67	60.417	Erinaceus_europaeus
ENSSLDG00000015486	trub1	94	79.008	ENSELUG00000000502	trub1	85	81.481	Esox_lucius
ENSSLDG00000015486	trub1	92	67.704	ENSFCAG00000031927	TRUB1	69	70.000	Felis_catus
ENSSLDG00000015486	trub1	78	68.981	ENSFALG00000002232	TRUB1	83	68.981	Ficedula_albicollis
ENSSLDG00000015486	trub1	66	68.306	ENSFDAG00000008140	TRUB1	73	68.362	Fukomys_damarensis
ENSSLDG00000015486	trub1	97	83.271	ENSFHEG00000004016	trub1	92	83.271	Fundulus_heteroclitus
ENSSLDG00000015486	trub1	89	67.611	ENSGALG00000009091	TRUB1	84	67.782	Gallus_gallus
ENSSLDG00000015486	trub1	92	83.984	ENSGAFG00000009193	trub1	89	80.078	Gambusia_affinis
ENSSLDG00000015486	trub1	71	89.286	ENSGACG00000015387	trub1	96	89.286	Gasterosteus_aculeatus
ENSSLDG00000015486	trub1	88	70.612	ENSGAGG00000009758	TRUB1	68	70.711	Gopherus_agassizii
ENSSLDG00000015486	trub1	88	69.512	ENSGGOG00000004583	TRUB1	69	69.583	Gorilla_gorilla
ENSSLDG00000015486	trub1	98	84.249	ENSHBUG00000016787	trub1	98	84.249	Haplochromis_burtoni
ENSSLDG00000015486	trub1	88	68.699	ENSHGLG00000015314	TRUB1	69	68.750	Heterocephalus_glaber_female
ENSSLDG00000015486	trub1	66	67.760	ENSHGLG00100009183	TRUB1	75	67.797	Heterocephalus_glaber_male
ENSSLDG00000015486	trub1	97	84.387	ENSHCOG00000017877	trub1	97	84.387	Hippocampus_comes
ENSSLDG00000015486	trub1	92	76.863	ENSIPUG00000017559	trub1	85	77.593	Ictalurus_punctatus
ENSSLDG00000015486	trub1	94	65.517	ENSSTOG00000003641	TRUB1	77	65.490	Ictidomys_tridecemlineatus
ENSSLDG00000015486	trub1	88	68.293	ENSJJAG00000011800	Trub1	71	68.333	Jaculus_jaculus
ENSSLDG00000015486	trub1	96	85.448	ENSKMAG00000006232	trub1	96	85.448	Kryptolebias_marmoratus
ENSSLDG00000015486	trub1	99	85.199	ENSLBEG00000026722	trub1	97	85.199	Labrus_bergylta
ENSSLDG00000015486	trub1	93	71.042	ENSLACG00000014885	TRUB1	86	71.042	Latimeria_chalumnae
ENSSLDG00000015486	trub1	94	74.046	ENSLOCG00000012979	trub1	82	77.500	Lepisosteus_oculatus
ENSSLDG00000015486	trub1	90	68.400	ENSLAFG00000015452	TRUB1	69	69.167	Loxodonta_africana
ENSSLDG00000015486	trub1	88	69.512	ENSMFAG00000031767	TRUB1	69	69.583	Macaca_fascicularis
ENSSLDG00000015486	trub1	88	69.512	ENSMMUG00000001902	TRUB1	69	69.583	Macaca_mulatta
ENSSLDG00000015486	trub1	88	63.821	ENSMNEG00000044646	TRUB1	68	64.167	Macaca_nemestrina
ENSSLDG00000015486	trub1	88	69.512	ENSMLEG00000042655	TRUB1	69	69.583	Mandrillus_leucophaeus
ENSSLDG00000015486	trub1	98	84.615	ENSMZEG00005024095	trub1	98	84.615	Maylandia_zebra
ENSSLDG00000015486	trub1	89	68.421	ENSMGAG00000011135	TRUB1	82	68.619	Meleagris_gallopavo
ENSSLDG00000015486	trub1	86	66.527	ENSMAUG00000011101	Trub1	71	66.250	Mesocricetus_auratus
ENSSLDG00000015486	trub1	88	69.106	ENSMICG00000016324	TRUB1	69	69.167	Microcebus_murinus
ENSSLDG00000015486	trub1	86	68.908	ENSMOCG00000017759	Trub1	72	68.619	Microtus_ochrogaster
ENSSLDG00000015486	trub1	88	69.672	ENSMODG00000009676	TRUB1	66	69.456	Monodelphis_domestica
ENSSLDG00000015486	trub1	87	68.182	MGP_CAROLIEiJ_G0023100	Trub1	73	68.508	Mus_caroli
ENSSLDG00000015486	trub1	87	67.355	ENSMUSG00000025086	Trub1	73	67.403	Mus_musculus
ENSSLDG00000015486	trub1	88	67.073	MGP_PahariEiJ_G0014588	Trub1	71	67.083	Mus_pahari
ENSSLDG00000015486	trub1	87	67.355	MGP_SPRETEiJ_G0024021	Trub1	73	67.956	Mus_spretus
ENSSLDG00000015486	trub1	88	69.919	ENSMPUG00000003556	TRUB1	69	70.000	Mustela_putorius_furo
ENSSLDG00000015486	trub1	88	68.293	ENSMLUG00000017686	TRUB1	71	68.333	Myotis_lucifugus
ENSSLDG00000015486	trub1	88	68.699	ENSNGAG00000018682	Trub1	69	68.750	Nannospalax_galili
ENSSLDG00000015486	trub1	92	88.235	ENSNBRG00000023393	trub1	88	88.980	Neolamprologus_brichardi
ENSSLDG00000015486	trub1	88	69.512	ENSNLEG00000016345	TRUB1	69	69.583	Nomascus_leucogenys
ENSSLDG00000015486	trub1	72	71.642	ENSMEUG00000006603	TRUB1	73	71.429	Notamacropus_eugenii
ENSSLDG00000015486	trub1	88	68.293	ENSOPRG00000009371	TRUB1	70	68.333	Ochotona_princeps
ENSSLDG00000015486	trub1	90	65.600	ENSODEG00000010854	TRUB1	69	66.250	Octodon_degus
ENSSLDG00000015486	trub1	98	86.081	ENSONIG00000007249	trub1	99	86.081	Oreochromis_niloticus
ENSSLDG00000015486	trub1	89	67.611	ENSOANG00000001556	TRUB1	78	68.354	Ornithorhynchus_anatinus
ENSSLDG00000015486	trub1	88	68.699	ENSOCUG00000009456	TRUB1	69	68.750	Oryctolagus_cuniculus
ENSSLDG00000015486	trub1	99	81.091	ENSORLG00000029719	trub1	97	81.550	Oryzias_latipes
ENSSLDG00000015486	trub1	97	81.550	ENSORLG00020016767	trub1	96	81.550	Oryzias_latipes_hni
ENSSLDG00000015486	trub1	96	81.273	ENSORLG00015014728	trub1	96	81.273	Oryzias_latipes_hsok
ENSSLDG00000015486	trub1	93	86.873	ENSOMEG00000014556	trub1	91	86.873	Oryzias_melastigma
ENSSLDG00000015486	trub1	88	69.512	ENSOGAG00000015895	TRUB1	69	69.583	Otolemur_garnettii
ENSSLDG00000015486	trub1	88	67.984	ENSOARG00000015591	TRUB1	70	68.016	Ovis_aries
ENSSLDG00000015486	trub1	88	69.512	ENSPPAG00000043645	TRUB1	69	69.583	Pan_paniscus
ENSSLDG00000015486	trub1	92	67.315	ENSPPRG00000007096	TRUB1	69	69.583	Panthera_pardus
ENSSLDG00000015486	trub1	92	67.315	ENSPTIG00000006378	TRUB1	69	69.583	Panthera_tigris_altaica
ENSSLDG00000015486	trub1	88	69.512	ENSPTRG00000002964	TRUB1	69	69.583	Pan_troglodytes
ENSSLDG00000015486	trub1	88	69.512	ENSPANG00000020712	TRUB1	69	69.583	Papio_anubis
ENSSLDG00000015486	trub1	60	79.762	ENSPKIG00000003852	trub1	72	79.762	Paramormyrops_kingsleyae
ENSSLDG00000015486	trub1	90	69.600	ENSPSIG00000012877	TRUB1	81	70.886	Pelodiscus_sinensis
ENSSLDG00000015486	trub1	96	79.699	ENSPMGG00000000075	trub1	94	79.323	Periophthalmus_magnuspinnatus
ENSSLDG00000015486	trub1	88	69.106	ENSPEMG00000011156	Trub1	71	69.167	Peromyscus_maniculatus_bairdii
ENSSLDG00000015486	trub1	88	69.672	ENSPCIG00000009729	TRUB1	65	69.456	Phascolarctos_cinereus
ENSSLDG00000015486	trub1	95	83.019	ENSPFOG00000009950	trub1	97	80.377	Poecilia_formosa
ENSSLDG00000015486	trub1	97	82.900	ENSPLAG00000013855	trub1	94	80.297	Poecilia_latipinna
ENSSLDG00000015486	trub1	97	83.271	ENSPMEG00000009064	trub1	97	80.669	Poecilia_mexicana
ENSSLDG00000015486	trub1	97	83.271	ENSPREG00000003343	trub1	97	80.669	Poecilia_reticulata
ENSSLDG00000015486	trub1	88	69.106	ENSPPYG00000002676	TRUB1	69	69.167	Pongo_abelii
ENSSLDG00000015486	trub1	90	62.400	ENSPCAG00000008427	TRUB1	68	62.917	Procavia_capensis
ENSSLDG00000015486	trub1	88	63.415	ENSPCOG00000024360	TRUB1	67	62.500	Propithecus_coquereli
ENSSLDG00000015486	trub1	73	70.792	ENSPVAG00000007575	TRUB1	75	70.918	Pteropus_vampyrus
ENSSLDG00000015486	trub1	98	84.249	ENSPNYG00000018614	trub1	98	84.249	Pundamilia_nyererei
ENSSLDG00000015486	trub1	92	68.627	ENSPNAG00000006881	trub1	77	68.465	Pygocentrus_nattereri
ENSSLDG00000015486	trub1	88	66.667	ENSRNOG00000017321	Trub1	70	66.667	Rattus_norvegicus
ENSSLDG00000015486	trub1	88	60.081	ENSRBIG00000033423	TRUB1	66	59.917	Rhinopithecus_bieti
ENSSLDG00000015486	trub1	88	69.512	ENSRROG00000033902	TRUB1	69	69.583	Rhinopithecus_roxellana
ENSSLDG00000015486	trub1	88	69.512	ENSSBOG00000024237	TRUB1	68	69.583	Saimiri_boliviensis_boliviensis
ENSSLDG00000015486	trub1	77	70.233	ENSSHAG00000009346	TRUB1	72	70.233	Sarcophilus_harrisii
ENSSLDG00000015486	trub1	94	77.692	ENSSFOG00015022124	trub1	89	77.692	Scleropages_formosus
ENSSLDG00000015486	trub1	95	89.434	ENSSMAG00000001020	trub1	94	89.434	Scophthalmus_maximus
ENSSLDG00000015486	trub1	100	98.921	ENSSDUG00000016414	trub1	100	98.921	Seriola_dumerili
ENSSLDG00000015486	trub1	94	66.920	ENSSPUG00000001642	TRUB1	90	66.540	Sphenodon_punctatus
ENSSLDG00000015486	trub1	100	84.892	ENSSPAG00000001217	trub1	100	84.892	Stegastes_partitus
ENSSLDG00000015486	trub1	88	69.106	ENSSSCG00000010653	TRUB1	70	69.167	Sus_scrofa
ENSSLDG00000015486	trub1	88	69.796	ENSTGUG00000010971	TRUB1	85	69.583	Taeniopygia_guttata
ENSSLDG00000015486	trub1	76	59.434	ENSTBEG00000002880	TRUB1	83	59.434	Tupaia_belangeri
ENSSLDG00000015486	trub1	73	70.297	ENSTTRG00000005767	TRUB1	75	70.408	Tursiops_truncatus
ENSSLDG00000015486	trub1	88	69.919	ENSUAMG00000024876	TRUB1	69	70.000	Ursus_americanus
ENSSLDG00000015486	trub1	88	69.919	ENSUMAG00000002411	TRUB1	71	70.000	Ursus_maritimus
ENSSLDG00000015486	trub1	88	69.919	ENSVPAG00000005507	TRUB1	69	70.000	Vicugna_pacos
ENSSLDG00000015486	trub1	88	69.919	ENSVVUG00000010085	TRUB1	58	70.000	Vulpes_vulpes
ENSSLDG00000015486	trub1	88	67.755	ENSXETG00000023828	trub1	85	68.776	Xenopus_tropicalis
ENSSLDG00000015486	trub1	89	85.081	ENSXCOG00000017847	trub1	82	85.408	Xiphophorus_couchianus
ENSSLDG00000015486	trub1	97	83.271	ENSXMAG00000014701	trub1	97	80.669	Xiphophorus_maculatus