EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000016098 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: rbfox3
Full Name: RNA binding protein fox-1 homolog 3-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 195583 bases
Position: chrPEQF01099064.1:1886912-2082494
Accession: 111664287
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000020840	Fox-1_C	PF12414.8	8.5e-35	1	1
ENSSLDP00000020850	Fox-1_C	PF12414.8	8.7e-35	1	1
ENSSLDP00000020816	Fox-1_C	PF12414.8	2.2e-34	1	1
ENSSLDP00000020736	Fox-1_C	PF12414.8	4.5e-29	1	1
ENSSLDP00000020745	Fox-1_C	PF12414.8	7.9e-29	1	1
ENSSLDP00000020873	Fox-1_C	PF12414.8	1.1e-22	1	1
ENSSLDP00000020873	RRM_1	PF00076.22	6.5e-19	1	1
ENSSLDP00000020850	RRM_1	PF00076.22	8.6e-19	1	1
ENSSLDP00000020736	RRM_1	PF00076.22	8.8e-19	1	1
ENSSLDP00000020840	RRM_1	PF00076.22	9e-19	1	1
ENSSLDP00000020745	RRM_1	PF00076.22	9.5e-19	1	1
ENSSLDP00000020816	RRM_1	PF00076.22	9.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000021567	-	1257	-	ENSSLDP00000020873	418 (aa)	-	-
ENSSLDT00000021510	-	1131	-	ENSSLDP00000020816	376 (aa)	-	-
ENSSLDT00000021534	-	1065	XM_023418810	ENSSLDP00000020840	354 (aa)	XP_023274578	-
ENSSLDT00000021438	-	1083	XM_023418811	ENSSLDP00000020745	360 (aa)	XP_023274579	-
ENSSLDT00000021429	-	1080	-	ENSSLDP00000020736	359 (aa)	-	-
ENSSLDT00000021544	-	1059	-	ENSSLDP00000020850	352 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000016098's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000016098's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000016098	-	98	81.199	ENSSLDG00000000149	rbfox3b	100	80.381
ENSSLDG00000016098	-	69	61.786	ENSSLDG00000018052	-	62	62.500
ENSSLDG00000016098	-	91	68.731	ENSSLDG00000009353	rbfox1	91	66.667
ENSSLDG00000016098	-	68	67.984	ENSSLDG00000022256	rbfox1l	89	54.416

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000016098	-	74	93.103	ENSG00000167281	RBFOX3	99	74.286	Homo_sapiens
ENSSLDG00000016098	-	99	80.672	ENSAPOG00000015658	-	92	79.050	Acanthochromis_polyacanthus
ENSSLDG00000016098	-	99	80.593	ENSAPOG00000021630	rbfox3b	100	80.109	Acanthochromis_polyacanthus
ENSSLDG00000016098	-	98	69.424	ENSAMEG00000014170	RBFOX3	98	70.876	Ailuropoda_melanoleuca
ENSSLDG00000016098	-	84	85.479	ENSACIG00000010817	rbfox3b	95	84.375	Amphilophus_citrinellus
ENSSLDG00000016098	-	88	80.967	ENSACIG00000003768	-	92	80.488	Amphilophus_citrinellus
ENSSLDG00000016098	-	98	80.926	ENSAOCG00000012358	rbfox3b	100	80.109	Amphiprion_ocellaris
ENSSLDG00000016098	-	100	93.611	ENSAOCG00000010786	-	99	93.611	Amphiprion_ocellaris
ENSSLDG00000016098	-	99	79.213	ENSAPEG00000019081	rbfox3b	100	78.652	Amphiprion_percula
ENSSLDG00000016098	-	98	80.697	ENSAPEG00000015891	-	89	85.838	Amphiprion_percula
ENSSLDG00000016098	-	88	72.254	ENSATEG00000019945	rbfox3b	95	74.924	Anabas_testudineus
ENSSLDG00000016098	-	85	83.489	ENSATEG00000023101	-	98	83.489	Anabas_testudineus
ENSSLDG00000016098	-	96	78.670	ENSACAG00000016093	RBFOX3	100	77.562	Anolis_carolinensis
ENSSLDG00000016098	-	72	93.333	ENSANAG00000023457	RBFOX3	95	75.748	Aotus_nancymaae
ENSSLDG00000016098	-	98	88.011	ENSACLG00000025552	-	100	88.011	Astatotilapia_calliptera
ENSSLDG00000016098	-	99	80.054	ENSACLG00000020011	rbfox3b	97	79.515	Astatotilapia_calliptera
ENSSLDG00000016098	-	95	75.562	ENSAMXG00000042841	rbfox3b	100	74.719	Astyanax_mexicanus
ENSSLDG00000016098	-	100	82.058	ENSAMXG00000037246	rbfox3a	100	82.527	Astyanax_mexicanus
ENSSLDG00000016098	-	68	80.165	ENSBTAG00000006280	RBFOX3	75	89.583	Bos_taurus
ENSSLDG00000016098	-	71	93.103	ENSCJAG00000009563	RBFOX3	79	89.583	Callithrix_jacchus
ENSSLDG00000016098	-	74	75.874	ENSCAFG00000005547	RBFOX3	100	77.739	Canis_familiaris
ENSSLDG00000016098	-	74	93.333	ENSCAFG00020008126	RBFOX3	77	88.235	Canis_lupus_dingo
ENSSLDG00000016098	-	74	93.333	ENSCHIG00000009124	RBFOX3	77	88.235	Capra_hircus
ENSSLDG00000016098	-	74	93.103	ENSTSYG00000029617	RBFOX3	79	91.667	Carlito_syrichta
ENSSLDG00000016098	-	90	65.416	ENSCPOG00000021703	RBFOX3	96	66.286	Cavia_porcellus
ENSSLDG00000016098	-	72	93.333	ENSCCAG00000028450	RBFOX3	95	75.748	Cebus_capucinus
ENSSLDG00000016098	-	80	81.597	ENSCATG00000018349	RBFOX3	95	77.076	Cercocebus_atys
ENSSLDG00000016098	-	90	66.038	ENSCLAG00000006449	RBFOX3	79	89.583	Chinchilla_lanigera
ENSSLDG00000016098	-	83	75.329	ENSCSAG00000002355	RBFOX3	95	77.076	Chlorocebus_sabaeus
ENSSLDG00000016098	-	97	75.783	ENSCPBG00000010904	RBFOX3	98	78.528	Chrysemys_picta_bellii
ENSSLDG00000016098	-	74	93.333	ENSCANG00000043120	RBFOX3	95	77.076	Colobus_angolensis_palliatus
ENSSLDG00000016098	-	71	86.207	ENSCGRG00001019476	Rbfox3	80	83.673	Cricetulus_griseus_chok1gshd
ENSSLDG00000016098	-	71	86.207	ENSCGRG00000003268	Rbfox3	80	83.673	Cricetulus_griseus_crigri
ENSSLDG00000016098	-	99	98.050	ENSCSEG00000015567	RBFOX3	99	98.050	Cynoglossus_semilaevis
ENSSLDG00000016098	-	99	65.252	ENSCSEG00000020606	RBFOX3	100	64.151	Cynoglossus_semilaevis
ENSSLDG00000016098	-	96	81.337	ENSCVAG00000006882	rbfox3b	97	80.501	Cyprinodon_variegatus
ENSSLDG00000016098	-	90	72.500	ENSDARG00000074310	rbfox3b	93	75.685	Danio_rerio
ENSSLDG00000016098	-	98	83.288	ENSDARG00000010083	rbfox3a	100	83.288	Danio_rerio
ENSSLDG00000016098	-	68	67.708	ENSDNOG00000039391	RBFOX3	59	89.583	Dasypus_novemcinctus
ENSSLDG00000016098	-	90	59.350	ENSDORG00000005352	Rbfox3	76	83.333	Dipodomys_ordii
ENSSLDG00000016098	-	98	63.784	ENSEBUG00000002129	RBFOX3	100	65.205	Eptatretus_burgeri
ENSSLDG00000016098	-	76	57.706	ENSEBUG00000013559	RBFOX3	77	56.115	Eptatretus_burgeri
ENSSLDG00000016098	-	83	75.817	ENSEASG00005005059	RBFOX3	95	78.477	Equus_asinus_asinus
ENSSLDG00000016098	-	83	75.570	ENSECAG00000023811	RBFOX3	95	78.146	Equus_caballus
ENSSLDG00000016098	-	68	86.275	ENSEEUG00000013974	RBFOX3	65	86.275	Erinaceus_europaeus
ENSSLDG00000016098	-	68	54.864	ENSELUG00000009807	-	64	59.729	Esox_lucius
ENSSLDG00000016098	-	99	80.863	ENSELUG00000017963	rbfox3b	97	82.173	Esox_lucius
ENSSLDG00000016098	-	96	76.731	ENSFCAG00000002555	RBFOX3	100	77.624	Felis_catus
ENSSLDG00000016098	-	98	59.950	ENSFALG00000012288	RBFOX3	98	61.404	Ficedula_albicollis
ENSSLDG00000016098	-	90	60.858	ENSFDAG00000007489	RBFOX3	78	82.000	Fukomys_damarensis
ENSSLDG00000016098	-	87	71.019	ENSFHEG00000008550	rbfox3b	96	70.530	Fundulus_heteroclitus
ENSSLDG00000016098	-	85	88.462	ENSGMOG00000019304	-	69	88.690	Gadus_morhua
ENSSLDG00000016098	-	96	78.611	ENSGALG00000032889	RBFOX3	100	79.444	Gallus_gallus
ENSSLDG00000016098	-	99	80.899	ENSGAFG00000005025	rbfox3b	100	80.056	Gambusia_affinis
ENSSLDG00000016098	-	81	92.308	ENSGACG00000002138	-	96	74.194	Gasterosteus_aculeatus
ENSSLDG00000016098	-	97	78.453	ENSGAGG00000020025	RBFOX3	97	78.846	Gopherus_agassizii
ENSSLDG00000016098	-	74	93.333	ENSGGOG00000012546	RBFOX3	95	77.076	Gorilla_gorilla
ENSSLDG00000016098	-	99	80.054	ENSHBUG00000018099	rbfox3b	97	80.223	Haplochromis_burtoni
ENSSLDG00000016098	-	97	85.632	ENSHBUG00000023098	-	98	85.387	Haplochromis_burtoni
ENSSLDG00000016098	-	90	65.600	ENSHGLG00000008679	RBFOX3	96	66.193	Heterocephalus_glaber_female
ENSSLDG00000016098	-	90	61.867	ENSHGLG00100014739	RBFOX3	96	62.133	Heterocephalus_glaber_male
ENSSLDG00000016098	-	91	79.141	ENSHCOG00000001863	RBFOX3	89	83.103	Hippocampus_comes
ENSSLDG00000016098	-	99	70.380	ENSHCOG00000007444	RBFOX3	95	69.459	Hippocampus_comes
ENSSLDG00000016098	-	88	64.809	ENSIPUG00000021966	rbfox3b	97	75.769	Ictalurus_punctatus
ENSSLDG00000016098	-	98	81.402	ENSIPUG00000012010	rbfox3a	100	81.132	Ictalurus_punctatus
ENSSLDG00000016098	-	90	61.728	ENSSTOG00000026817	RBFOX3	95	64.746	Ictidomys_tridecemlineatus
ENSSLDG00000016098	-	71	93.103	ENSJJAG00000014167	Rbfox3	79	89.583	Jaculus_jaculus
ENSSLDG00000016098	-	98	80.654	ENSKMAG00000006726	rbfox3b	100	79.837	Kryptolebias_marmoratus
ENSSLDG00000016098	-	99	80.863	ENSLBEG00000004030	rbfox3b	100	80.381	Labrus_bergylta
ENSSLDG00000016098	-	98	92.643	ENSLBEG00000022508	-	100	92.643	Labrus_bergylta
ENSSLDG00000016098	-	98	69.608	ENSLACG00000018409	-	100	69.873	Latimeria_chalumnae
ENSSLDG00000016098	-	51	58.919	ENSLACG00000000021	-	95	58.602	Latimeria_chalumnae
ENSSLDG00000016098	-	90	85.890	ENSLOCG00000012267	rbfox3a	98	86.196	Lepisosteus_oculatus
ENSSLDG00000016098	-	98	71.173	ENSLAFG00000016623	RBFOX3	98	71.173	Loxodonta_africana
ENSSLDG00000016098	-	90	64.804	ENSMFAG00000002247	RBFOX3	79	89.583	Macaca_fascicularis
ENSSLDG00000016098	-	74	93.103	ENSMMUG00000023028	RBFOX3	95	77.076	Macaca_mulatta
ENSSLDG00000016098	-	83	75.000	ENSMNEG00000041147	RBFOX3	95	76.744	Macaca_nemestrina
ENSSLDG00000016098	-	83	75.329	ENSMLEG00000025686	RBFOX3	95	77.076	Mandrillus_leucophaeus
ENSSLDG00000016098	-	88	79.167	ENSMAMG00000019810	rbfox3b	95	80.903	Mastacembelus_armatus
ENSSLDG00000016098	-	97	93.878	ENSMAMG00000020600	-	99	93.878	Mastacembelus_armatus
ENSSLDG00000016098	-	99	80.054	ENSMZEG00005000781	rbfox3b	100	79.837	Maylandia_zebra
ENSSLDG00000016098	-	85	72.537	ENSMZEG00005003055	-	90	68.451	Maylandia_zebra
ENSSLDG00000016098	-	61	79.638	ENSMGAG00000005600	RBFOX3	83	80.090	Meleagris_gallopavo
ENSSLDG00000016098	-	90	64.960	ENSMAUG00000013543	Rbfox3	80	83.333	Mesocricetus_auratus
ENSSLDG00000016098	-	76	93.333	ENSMICG00000014898	RBFOX3	96	77.076	Microcebus_murinus
ENSSLDG00000016098	-	90	66.038	ENSMOCG00000015373	Rbfox3	79	87.500	Microtus_ochrogaster
ENSSLDG00000016098	-	99	78.919	ENSMMOG00000020193	rbfox3b	100	78.320	Mola_mola
ENSSLDG00000016098	-	96	76.944	ENSMODG00000002089	RBFOX3	100	77.562	Monodelphis_domestica
ENSSLDG00000016098	-	98	80.109	ENSMALG00000020407	rbfox3b	100	79.292	Monopterus_albus
ENSSLDG00000016098	-	99	90.836	ENSMALG00000018270	-	98	93.831	Monopterus_albus
ENSSLDG00000016098	-	90	75.617	MGP_CAROLIEiJ_G0017487	Rbfox3	94	91.241	Mus_caroli
ENSSLDG00000016098	-	90	75.309	ENSMUSG00000025576	Rbfox3	94	91.241	Mus_musculus
ENSSLDG00000016098	-	90	73.252	MGP_PahariEiJ_G0018614	Rbfox3	94	91.971	Mus_pahari
ENSSLDG00000016098	-	90	75.926	MGP_SPRETEiJ_G0018331	Rbfox3	94	91.241	Mus_spretus
ENSSLDG00000016098	-	98	70.256	ENSMPUG00000012319	RBFOX3	98	71.392	Mustela_putorius_furo
ENSSLDG00000016098	-	90	66.577	ENSNGAG00000018006	Rbfox3	79	89.583	Nannospalax_galili
ENSSLDG00000016098	-	99	77.247	ENSNBRG00000010102	rbfox3b	100	77.247	Neolamprologus_brichardi
ENSSLDG00000016098	-	89	86.335	ENSNBRG00000022885	-	92	86.335	Neolamprologus_brichardi
ENSSLDG00000016098	-	59	92.857	ENSNLEG00000000153	-	79	92.857	Nomascus_leucogenys
ENSSLDG00000016098	-	77	83.333	ENSMEUG00000004218	-	79	89.583	Notamacropus_eugenii
ENSSLDG00000016098	-	61	82.759	ENSOPRG00000016279	-	75	74.479	Ochotona_princeps
ENSSLDG00000016098	-	83	77.409	ENSODEG00000009433	RBFOX3	95	77.741	Octodon_degus
ENSSLDG00000016098	-	96	81.616	ENSONIG00000009549	rbfox3b	97	80.780	Oreochromis_niloticus
ENSSLDG00000016098	-	90	87.385	ENSONIG00000007282	-	98	85.373	Oreochromis_niloticus
ENSSLDG00000016098	-	70	58.947	ENSOCUG00000014217	RBFOX3	57	83.333	Oryctolagus_cuniculus
ENSSLDG00000016098	-	98	80.707	ENSORLG00000000905	rbfox3b	79	79.348	Oryzias_latipes
ENSSLDG00000016098	-	98	80.707	ENSORLG00020018030	rbfox3b	99	79.348	Oryzias_latipes_hni
ENSSLDG00000016098	-	98	80.435	ENSORLG00015009200	rbfox3b	99	79.620	Oryzias_latipes_hsok
ENSSLDG00000016098	-	81	78.387	ENSOMEG00000014677	rbfox3b	85	78.395	Oryzias_melastigma
ENSSLDG00000016098	-	98	70.699	ENSOGAG00000029595	RBFOX3	98	72.087	Otolemur_garnettii
ENSSLDG00000016098	-	98	54.791	ENSOARG00000002908	RBFOX3	100	55.949	Ovis_aries
ENSSLDG00000016098	-	68	79.339	ENSPPAG00000025383	RBFOX3	95	74.545	Pan_paniscus
ENSSLDG00000016098	-	83	66.765	ENSPPRG00000007819	RBFOX3	81	85.417	Panthera_pardus
ENSSLDG00000016098	-	74	93.333	ENSPTRG00000009727	RBFOX3	95	77.076	Pan_troglodytes
ENSSLDG00000016098	-	83	75.329	ENSPANG00000019837	RBFOX3	95	77.076	Papio_anubis
ENSSLDG00000016098	-	98	83.424	ENSPKIG00000010299	rbfox3a	97	82.493	Paramormyrops_kingsleyae
ENSSLDG00000016098	-	97	63.793	ENSPKIG00000022633	-	97	63.315	Paramormyrops_kingsleyae
ENSSLDG00000016098	-	86	79.167	ENSPMGG00000008000	rbfox3b	97	80.128	Periophthalmus_magnuspinnatus
ENSSLDG00000016098	-	90	66.307	ENSPEMG00000010500	Rbfox3	79	87.500	Peromyscus_maniculatus_bairdii
ENSSLDG00000016098	-	55	68.075	ENSPMAG00000008689	rbfox3b	99	69.953	Petromyzon_marinus
ENSSLDG00000016098	-	96	68.460	ENSPCIG00000005766	RBFOX3	85	89.583	Phascolarctos_cinereus
ENSSLDG00000016098	-	97	80.992	ENSPFOG00000018294	rbfox3b	95	80.165	Poecilia_formosa
ENSSLDG00000016098	-	75	84.151	ENSPLAG00000000481	rbfox3b	76	88.085	Poecilia_latipinna
ENSSLDG00000016098	-	87	71.019	ENSPMEG00000022997	rbfox3b	96	70.199	Poecilia_mexicana
ENSSLDG00000016098	-	99	80.054	ENSPREG00000012886	rbfox3b	100	80.323	Poecilia_reticulata
ENSSLDG00000016098	-	97	64.857	ENSPPYG00000008704	RBFOX3	99	63.944	Pongo_abelii
ENSSLDG00000016098	-	83	65.896	ENSPCAG00000001401	RBFOX3	80	87.500	Procavia_capensis
ENSSLDG00000016098	-	75	93.103	ENSPCOG00000012689	RBFOX3	79	89.583	Propithecus_coquereli
ENSSLDG00000016098	-	71	86.207	ENSPVAG00000015243	RBFOX3	80	83.673	Pteropus_vampyrus
ENSSLDG00000016098	-	99	77.247	ENSPNYG00000010414	rbfox3b	100	77.247	Pundamilia_nyererei
ENSSLDG00000016098	-	100	88.889	ENSPNYG00000009079	-	98	88.889	Pundamilia_nyererei
ENSSLDG00000016098	-	99	82.447	ENSPNAG00000002889	rbfox3a	100	82.796	Pygocentrus_nattereri
ENSSLDG00000016098	-	89	67.834	ENSPNAG00000018173	rbfox3b	87	68.276	Pygocentrus_nattereri
ENSSLDG00000016098	-	72	87.500	ENSRNOG00000003386	Rbfox3	95	77.483	Rattus_norvegicus
ENSSLDG00000016098	-	96	76.731	ENSRBIG00000040449	RBFOX3	100	77.624	Rhinopithecus_bieti
ENSSLDG00000016098	-	83	75.329	ENSRROG00000000766	RBFOX3	95	77.076	Rhinopithecus_roxellana
ENSSLDG00000016098	-	71	93.103	ENSSBOG00000031591	RBFOX3	95	75.748	Saimiri_boliviensis_boliviensis
ENSSLDG00000016098	-	98	68.905	ENSSHAG00000016076	RBFOX3	99	67.662	Sarcophilus_harrisii
ENSSLDG00000016098	-	98	83.967	ENSSFOG00015023260	rbfox3a	97	84.341	Scleropages_formosus
ENSSLDG00000016098	-	96	65.928	ENSSFOG00015004716	RBFOX3	100	66.667	Scleropages_formosus
ENSSLDG00000016098	-	97	76.842	ENSSMAG00000012618	rbfox3b	85	77.128	Scophthalmus_maximus
ENSSLDG00000016098	-	98	91.008	ENSSMAG00000019052	-	100	91.008	Scophthalmus_maximus
ENSSLDG00000016098	-	100	96.667	ENSSDUG00000015801	-	100	96.667	Seriola_dumerili
ENSSLDG00000016098	-	87	71.019	ENSSDUG00000023183	rbfox3b	96	70.530	Seriola_dumerili
ENSSLDG00000016098	-	96	69.274	ENSSPUG00000011733	RBFOX3	95	78.808	Sphenodon_punctatus
ENSSLDG00000016098	-	99	79.775	ENSSPAG00000017571	rbfox3b	100	78.933	Stegastes_partitus
ENSSLDG00000016098	-	82	75.000	ENSSPAG00000004898	-	89	81.017	Stegastes_partitus
ENSSLDG00000016098	-	75	81.319	ENSSSCG00000039498	RBFOX3	79	90.196	Sus_scrofa
ENSSLDG00000016098	-	97	74.167	ENSTRUG00000004894	rbfox3b	97	73.961	Takifugu_rubripes
ENSSLDG00000016098	-	99	69.900	ENSTNIG00000011278	rbfox3b	100	69.154	Tetraodon_nigroviridis
ENSSLDG00000016098	-	90	43.324	ENSTBEG00000004296	-	65	54.583	Tupaia_belangeri
ENSSLDG00000016098	-	83	60.983	ENSTTRG00000003676	RBFOX3	79	89.583	Tursiops_truncatus
ENSSLDG00000016098	-	83	75.987	ENSUAMG00000004668	RBFOX3	95	77.741	Ursus_americanus
ENSSLDG00000016098	-	96	77.624	ENSVVUG00000017864	RBFOX3	85	89.583	Vulpes_vulpes
ENSSLDG00000016098	-	98	58.500	ENSXETG00000020236	rbfox3	98	60.925	Xenopus_tropicalis
ENSSLDG00000016098	-	96	81.058	ENSXCOG00000018262	rbfox3b	96	83.624	Xiphophorus_couchianus
ENSSLDG00000016098	-	99	81.132	ENSXMAG00000012939	rbfox3b	97	80.780	Xiphophorus_maculatus