EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000016386 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 9365 bases
Position: chrPEQF01099021.1:623005-632369
Accession: 111661277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000020997	ResIII	PF04851.15	2.4e-08	1	1
ENSSLDP00000020997	DEAD	PF00270.29	1.9e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000021693	-	2610	XM_023414795	ENSSLDP00000020997	870 (aa)	XP_023270563	-

Gene Model

Click here to download ENSSLDG00000016386's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000016386's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000016386	hfm1	81	31.462	ENSSLDG00000010884	snrnp200	64	31.462
ENSSLDG00000016386	hfm1	73	32.227	ENSSLDG00000021782	ascc3	57	32.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000016386	hfm1	100	64.808	ENSG00000162669	HFM1	65	64.808	Homo_sapiens
ENSSLDG00000016386	hfm1	100	87.615	ENSAPOG00000005304	hfm1	100	87.615	Acanthochromis_polyacanthus
ENSSLDG00000016386	hfm1	92	66.265	ENSAMEG00000000432	HFM1	58	66.265	Ailuropoda_melanoleuca
ENSSLDG00000016386	hfm1	90	85.591	ENSACIG00000021553	hfm1	75	85.591	Amphilophus_citrinellus
ENSSLDG00000016386	hfm1	100	88.851	ENSAOCG00000022839	hfm1	100	88.851	Amphiprion_ocellaris
ENSSLDG00000016386	hfm1	100	88.736	ENSAPEG00000014316	hfm1	100	88.736	Amphiprion_percula
ENSSLDG00000016386	hfm1	92	88.634	ENSATEG00000019181	hfm1	68	87.984	Anabas_testudineus
ENSSLDG00000016386	hfm1	92	66.587	ENSAPLG00000013639	HFM1	58	66.587	Anas_platyrhynchos
ENSSLDG00000016386	hfm1	100	63.689	ENSANAG00000029513	HFM1	66	63.689	Aotus_nancymaae
ENSSLDG00000016386	hfm1	99	81.013	ENSACLG00000009033	hfm1	100	81.013	Astatotilapia_calliptera
ENSSLDG00000016386	hfm1	100	75.816	ENSAMXG00000006108	hfm1	62	75.816	Astyanax_mexicanus
ENSSLDG00000016386	hfm1	100	66.627	ENSBTAG00000020856	HFM1	63	66.627	Bos_taurus
ENSSLDG00000016386	hfm1	100	64.228	ENSCJAG00000001843	HFM1	65	64.228	Callithrix_jacchus
ENSSLDG00000016386	hfm1	92	66.345	ENSCAFG00000020187	HFM1	57	66.345	Canis_familiaris
ENSSLDG00000016386	hfm1	99	66.306	ENSTSYG00000014250	HFM1	62	66.306	Carlito_syrichta
ENSSLDG00000016386	hfm1	92	65.422	ENSCPOG00000007421	HFM1	59	65.422	Cavia_porcellus
ENSSLDG00000016386	hfm1	96	63.879	ENSCCAG00000033206	HFM1	60	63.879	Cebus_capucinus
ENSSLDG00000016386	hfm1	100	65.783	ENSCATG00000030987	HFM1	63	65.783	Cercocebus_atys
ENSSLDG00000016386	hfm1	92	66.339	ENSCLAG00000005173	HFM1	55	66.339	Chinchilla_lanigera
ENSSLDG00000016386	hfm1	77	51.117	ENSCSAVG00000005094	-	100	51.117	Ciona_savignyi
ENSSLDG00000016386	hfm1	89	62.765	ENSCGRG00001016995	Hfm1	57	62.765	Cricetulus_griseus_chok1gshd
ENSSLDG00000016386	hfm1	92	64.897	ENSCGRG00000017181	Hfm1	58	64.897	Cricetulus_griseus_crigri
ENSSLDG00000016386	hfm1	92	82.667	ENSCSEG00000017659	hfm1	76	82.667	Cynoglossus_semilaevis
ENSSLDG00000016386	hfm1	79	82.419	ENSCVAG00000005075	hfm1	86	82.419	Cyprinodon_variegatus
ENSSLDG00000016386	hfm1	100	74.539	ENSDARG00000104288	hfm1	87	74.539	Danio_rerio
ENSSLDG00000016386	hfm1	91	65.614	ENSDNOG00000004776	HFM1	55	65.614	Dasypus_novemcinctus
ENSSLDG00000016386	hfm1	92	63.991	ENSDORG00000014661	Hfm1	58	63.991	Dipodomys_ordii
ENSSLDG00000016386	hfm1	89	66.334	ENSEASG00005015424	HFM1	80	66.334	Equus_asinus_asinus
ENSSLDG00000016386	hfm1	92	66.506	ENSECAG00000024039	HFM1	56	66.506	Equus_caballus
ENSSLDG00000016386	hfm1	100	79.885	ENSELUG00000018944	hfm1	98	79.885	Esox_lucius
ENSSLDG00000016386	hfm1	92	66.386	ENSFCAG00000029116	HFM1	58	66.386	Felis_catus
ENSSLDG00000016386	hfm1	92	66.907	ENSFALG00000001781	HFM1	58	66.907	Ficedula_albicollis
ENSSLDG00000016386	hfm1	96	64.808	ENSFDAG00000020816	HFM1	58	64.808	Fukomys_damarensis
ENSSLDG00000016386	hfm1	92	74.818	ENSGMOG00000017436	hfm1	86	74.818	Gadus_morhua
ENSSLDG00000016386	hfm1	99	82.986	ENSGAFG00000018093	hfm1	100	82.986	Gambusia_affinis
ENSSLDG00000016386	hfm1	92	81.697	ENSGACG00000015686	hfm1	85	81.697	Gasterosteus_aculeatus
ENSSLDG00000016386	hfm1	100	64.692	ENSGGOG00000038524	HFM1	65	64.692	Gorilla_gorilla
ENSSLDG00000016386	hfm1	92	83.656	ENSHBUG00000007309	hfm1	79	83.656	Haplochromis_burtoni
ENSSLDG00000016386	hfm1	99	78.605	ENSHCOG00000019632	hfm1	100	78.605	Hippocampus_comes
ENSSLDG00000016386	hfm1	99	74.742	ENSIPUG00000017020	hfm1	98	74.742	Ictalurus_punctatus
ENSSLDG00000016386	hfm1	96	63.647	ENSJJAG00000017198	Hfm1	61	63.647	Jaculus_jaculus
ENSSLDG00000016386	hfm1	92	83.373	ENSKMAG00000002282	hfm1	85	83.333	Kryptolebias_marmoratus
ENSSLDG00000016386	hfm1	100	83.448	ENSLBEG00000006759	hfm1	99	83.448	Labrus_bergylta
ENSSLDG00000016386	hfm1	92	68.547	ENSLACG00000010698	HFM1	79	68.427	Latimeria_chalumnae
ENSSLDG00000016386	hfm1	92	73.285	ENSLOCG00000004931	hfm1	76	73.285	Lepisosteus_oculatus
ENSSLDG00000016386	hfm1	74	67.459	ENSLAFG00000015903	-	90	67.459	Loxodonta_africana
ENSSLDG00000016386	hfm1	99	63.482	ENSMFAG00000003649	HFM1	62	63.482	Macaca_fascicularis
ENSSLDG00000016386	hfm1	99	65.783	ENSMMUG00000006819	HFM1	62	65.783	Macaca_mulatta
ENSSLDG00000016386	hfm1	99	84.828	ENSMAMG00000004623	hfm1	100	84.828	Mastacembelus_armatus
ENSSLDG00000016386	hfm1	99	81.013	ENSMZEG00005004679	hfm1	100	81.013	Maylandia_zebra
ENSSLDG00000016386	hfm1	85	65.319	ENSMGAG00000008437	HFM1	95	65.319	Meleagris_gallopavo
ENSSLDG00000016386	hfm1	92	65.259	ENSMAUG00000018858	Hfm1	58	65.259	Mesocricetus_auratus
ENSSLDG00000016386	hfm1	96	64.269	ENSMICG00000037935	HFM1	60	64.269	Microcebus_murinus
ENSSLDG00000016386	hfm1	92	65.983	ENSMOCG00000014812	Hfm1	58	65.983	Microtus_ochrogaster
ENSSLDG00000016386	hfm1	100	87.816	ENSMMOG00000006148	hfm1	99	87.816	Mola_mola
ENSSLDG00000016386	hfm1	100	88.417	ENSMALG00000002401	hfm1	100	88.417	Monopterus_albus
ENSSLDG00000016386	hfm1	83	71.667	MGP_CAROLIEiJ_G0027496	Hfm1	53	71.667	Mus_caroli
ENSSLDG00000016386	hfm1	92	65.621	ENSMUSG00000043410	Hfm1	58	65.621	Mus_musculus
ENSSLDG00000016386	hfm1	92	65.862	MGP_PahariEiJ_G0017268	Hfm1	58	65.862	Mus_pahari
ENSSLDG00000016386	hfm1	92	66.224	MGP_SPRETEiJ_G0028495	Hfm1	58	66.224	Mus_spretus
ENSSLDG00000016386	hfm1	92	66.627	ENSMPUG00000004594	HFM1	56	66.627	Mustela_putorius_furo
ENSSLDG00000016386	hfm1	92	66.145	ENSMLUG00000010200	HFM1	58	66.145	Myotis_lucifugus
ENSSLDG00000016386	hfm1	99	81.128	ENSNBRG00000002910	hfm1	100	81.128	Neolamprologus_brichardi
ENSSLDG00000016386	hfm1	100	63.256	ENSNLEG00000010285	HFM1	65	63.256	Nomascus_leucogenys
ENSSLDG00000016386	hfm1	86	65.161	ENSMEUG00000015788	HFM1	54	65.161	Notamacropus_eugenii
ENSSLDG00000016386	hfm1	92	61.325	ENSOPRG00000013916	HFM1	58	61.325	Ochotona_princeps
ENSSLDG00000016386	hfm1	92	84.439	ENSONIG00000010590	hfm1	79	84.439	Oreochromis_niloticus
ENSSLDG00000016386	hfm1	90	83.715	ENSORLG00000026844	hfm1	99	83.715	Oryzias_latipes
ENSSLDG00000016386	hfm1	100	71.256	ENSORLG00020002951	hfm1	71	71.256	Oryzias_latipes_hni
ENSSLDG00000016386	hfm1	98	80.700	ENSOMEG00000016474	hfm1	64	80.700	Oryzias_melastigma
ENSSLDG00000016386	hfm1	92	65.824	ENSOGAG00000032369	HFM1	68	65.824	Otolemur_garnettii
ENSSLDG00000016386	hfm1	100	66.747	ENSOARG00000015812	HFM1	63	66.747	Ovis_aries
ENSSLDG00000016386	hfm1	100	65.041	ENSPPAG00000024582	HFM1	70	65.041	Pan_paniscus
ENSSLDG00000016386	hfm1	92	66.386	ENSPPRG00000003270	HFM1	58	66.386	Panthera_pardus
ENSSLDG00000016386	hfm1	92	66.386	ENSPTIG00000018881	HFM1	58	66.386	Panthera_tigris_altaica
ENSSLDG00000016386	hfm1	100	66.386	ENSPTRG00000000948	HFM1	63	66.386	Pan_troglodytes
ENSSLDG00000016386	hfm1	100	65.783	ENSPANG00000009838	HFM1	63	65.783	Papio_anubis
ENSSLDG00000016386	hfm1	99	70.286	ENSPKIG00000003810	hfm1	99	70.286	Paramormyrops_kingsleyae
ENSSLDG00000016386	hfm1	92	81.875	ENSPMGG00000011059	hfm1	100	81.875	Periophthalmus_magnuspinnatus
ENSSLDG00000016386	hfm1	92	65.862	ENSPEMG00000022852	Hfm1	58	65.862	Peromyscus_maniculatus_bairdii
ENSSLDG00000016386	hfm1	95	64.802	ENSPCIG00000014233	HFM1	58	64.802	Phascolarctos_cinereus
ENSSLDG00000016386	hfm1	92	82.688	ENSPFOG00000017194	hfm1	79	82.688	Poecilia_formosa
ENSSLDG00000016386	hfm1	92	82.289	ENSPLAG00000000571	hfm1	75	82.289	Poecilia_latipinna
ENSSLDG00000016386	hfm1	92	82.410	ENSPMEG00000019475	hfm1	76	82.410	Poecilia_mexicana
ENSSLDG00000016386	hfm1	99	82.599	ENSPREG00000007803	hfm1	100	82.599	Poecilia_reticulata
ENSSLDG00000016386	hfm1	100	66.265	ENSPPYG00000001163	HFM1	58	66.265	Pongo_abelii
ENSSLDG00000016386	hfm1	96	59.698	ENSPVAG00000009713	HFM1	61	59.698	Pteropus_vampyrus
ENSSLDG00000016386	hfm1	99	81.013	ENSPNYG00000001795	hfm1	100	81.013	Pundamilia_nyererei
ENSSLDG00000016386	hfm1	100	77.086	ENSPNAG00000010865	hfm1	90	77.086	Pygocentrus_nattereri
ENSSLDG00000016386	hfm1	92	65.621	ENSRNOG00000023299	Hfm1	58	65.621	Rattus_norvegicus
ENSSLDG00000016386	hfm1	100	65.904	ENSRROG00000045569	HFM1	63	65.904	Rhinopithecus_roxellana
ENSSLDG00000016386	hfm1	100	65.663	ENSSBOG00000027456	HFM1	64	65.663	Saimiri_boliviensis_boliviensis
ENSSLDG00000016386	hfm1	65	66.948	ENSSHAG00000014616	-	67	66.948	Sarcophilus_harrisii
ENSSLDG00000016386	hfm1	100	74.910	ENSSFOG00015020129	hfm1	60	74.910	Scleropages_formosus
ENSSLDG00000016386	hfm1	92	88.327	ENSSMAG00000006907	hfm1	81	88.327	Scophthalmus_maximus
ENSSLDG00000016386	hfm1	100	97.589	ENSSDUG00000011424	hfm1	100	97.589	Seriola_dumerili
ENSSLDG00000016386	hfm1	100	87.715	ENSSPAG00000001023	hfm1	100	87.715	Stegastes_partitus
ENSSLDG00000016386	hfm1	92	67.108	ENSSSCG00000006912	HFM1	61	67.108	Sus_scrofa
ENSSLDG00000016386	hfm1	92	66.667	ENSTGUG00000006172	HFM1	86	66.667	Taeniopygia_guttata
ENSSLDG00000016386	hfm1	53	82.974	ENSTNIG00000006962	hfm1	95	82.974	Tetraodon_nigroviridis
ENSSLDG00000016386	hfm1	96	64.808	ENSTTRG00000013933	HFM1	61	64.808	Tursiops_truncatus
ENSSLDG00000016386	hfm1	92	63.976	ENSVPAG00000011331	HFM1	58	63.976	Vicugna_pacos
ENSSLDG00000016386	hfm1	90	65.594	ENSVVUG00000020760	HFM1	81	65.594	Vulpes_vulpes
ENSSLDG00000016386	hfm1	99	82.893	ENSXMAG00000004178	hfm1	100	82.893	Xiphophorus_maculatus