EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000016512 (Gene tree)
Gene ID: -
Gene Symbol: gfi1aa
Alias: gfi1.1|gfi1a|zgc:113277
Full Name: zinc finger protein Gfi-1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 2429 bases
Position: chrPEQF01099021.1:662910-665338
Accession: 111661249
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000021124	zf-C2H2	PF00096.26	1.4e-23	1	5
ENSSLDP00000021124	zf-C2H2	PF00096.26	1.4e-23	2	5
ENSSLDP00000021124	zf-C2H2	PF00096.26	1.4e-23	3	5
ENSSLDP00000021124	zf-C2H2	PF00096.26	1.4e-23	4	5
ENSSLDP00000021124	zf-C2H2	PF00096.26	1.4e-23	5	5
ENSSLDP00000021124	zf-met	PF12874.7	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000021822	-	1161	XM_023414757	ENSSLDP00000021124	386 (aa)	XP_023270525	-

Gene Model

Click here to download ENSSLDG00000016512's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000016512's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000016512	gfi1aa	56	40.146	ENSSLDG00000004485	-	63	40.146
ENSSLDG00000016512	gfi1aa	57	41.912	ENSSLDG00000014166	znf319b	81	41.912
ENSSLDG00000016512	gfi1aa	53	41.818	ENSSLDG00000016301	-	90	41.818
ENSSLDG00000016512	gfi1aa	51	38.860	ENSSLDG00000005999	-	52	38.860
ENSSLDG00000016512	gfi1aa	60	44.348	ENSSLDG00000009061	-	90	32.857
ENSSLDG00000016512	gfi1aa	50	43.885	ENSSLDG00000002756	-	76	43.885
ENSSLDG00000016512	gfi1aa	51	47.126	ENSSLDG00000020727	-	96	47.126
ENSSLDG00000016512	gfi1aa	65	39.716	ENSSLDG00000005839	-	61	39.716
ENSSLDG00000016512	gfi1aa	52	45.000	ENSSLDG00000017937	-	95	45.000
ENSSLDG00000016512	gfi1aa	100	63.753	ENSSLDG00000020163	gfi1ab	100	63.753
ENSSLDG00000016512	gfi1aa	63	36.441	ENSSLDG00000012852	snai2	57	39.189
ENSSLDG00000016512	gfi1aa	76	46.250	ENSSLDG00000020675	-	99	46.250
ENSSLDG00000016512	gfi1aa	51	42.262	ENSSLDG00000005850	-	93	43.452
ENSSLDG00000016512	gfi1aa	53	44.048	ENSSLDG00000016317	-	86	44.048
ENSSLDG00000016512	gfi1aa	51	40.000	ENSSLDG00000018521	znf646	59	40.000
ENSSLDG00000016512	gfi1aa	81	45.390	ENSSLDG00000000352	-	70	45.390
ENSSLDG00000016512	gfi1aa	54	45.238	ENSSLDG00000007756	-	94	45.588
ENSSLDG00000016512	gfi1aa	65	33.721	ENSSLDG00000012415	si:dkey-89b17.4	55	30.460
ENSSLDG00000016512	gfi1aa	100	51.026	ENSSLDG00000013823	gfi1b	53	87.209
ENSSLDG00000016512	gfi1aa	55	40.854	ENSSLDG00000002776	-	68	40.854
ENSSLDG00000016512	gfi1aa	53	47.590	ENSSLDG00000013760	-	96	47.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000016512	gfi1aa	100	86.849	ENSAPOG00000005043	gfi1aa	100	86.849	Acanthochromis_polyacanthus
ENSSLDG00000016512	gfi1aa	100	84.051	ENSACIG00000021378	gfi1aa	100	84.051	Amphilophus_citrinellus
ENSSLDG00000016512	gfi1aa	100	86.352	ENSAOCG00000022957	gfi1aa	100	86.352	Amphiprion_ocellaris
ENSSLDG00000016512	gfi1aa	100	87.147	ENSAPEG00000014539	gfi1aa	100	87.147	Amphiprion_percula
ENSSLDG00000016512	gfi1aa	100	82.878	ENSATEG00000019026	gfi1aa	99	88.732	Anabas_testudineus
ENSSLDG00000016512	gfi1aa	100	82.836	ENSACLG00000008641	gfi1aa	100	82.836	Astatotilapia_calliptera
ENSSLDG00000016512	gfi1aa	100	63.889	ENSDARG00000020746	gfi1aa	100	62.121	Danio_rerio
ENSSLDG00000016512	gfi1aa	100	85.604	ENSHBUG00000007389	gfi1aa	100	85.604	Haplochromis_burtoni
ENSSLDG00000016512	gfi1aa	100	76.942	ENSKMAG00000002148	gfi1aa	100	77.193	Kryptolebias_marmoratus
ENSSLDG00000016512	gfi1aa	100	81.203	ENSLBEG00000006603	gfi1aa	100	80.952	Labrus_bergylta
ENSSLDG00000016512	gfi1aa	100	80.500	ENSMAMG00000004896	gfi1aa	100	80.250	Mastacembelus_armatus
ENSSLDG00000016512	gfi1aa	100	82.836	ENSMZEG00005004578	gfi1aa	100	82.836	Maylandia_zebra
ENSSLDG00000016512	gfi1aa	100	69.509	ENSMMOG00000006167	gfi1aa	100	69.509	Mola_mola
ENSSLDG00000016512	gfi1aa	100	82.587	ENSNBRG00000002673	gfi1aa	100	82.587	Neolamprologus_brichardi
ENSSLDG00000016512	gfi1aa	100	82.544	ENSPNYG00000002189	gfi1aa	100	82.544	Pundamilia_nyererei
ENSSLDG00000016512	gfi1aa	100	84.158	ENSSMAG00000006797	gfi1aa	100	84.653	Scophthalmus_maximus
ENSSLDG00000016512	gfi1aa	100	93.548	ENSSDUG00000011654	gfi1aa	100	93.548	Seriola_dumerili
ENSSLDG00000016512	gfi1aa	85	83.768	ENSSPAG00000000927	gfi1aa	94	83.768	Stegastes_partitus
ENSSLDG00000016512	gfi1aa	100	79.208	ENSTRUG00000004744	gfi1aa	100	79.208	Takifugu_rubripes