EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000016866 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 13854 bases
Position: chrPEQF01098888.1:398164-412017
Accession: 111657667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000021630	Upf2	PF04050.14	7.1e-33	1	1
ENSSLDP00000021630	MIF4G	PF02854.19	4.9e-76	1	3
ENSSLDP00000021630	MIF4G	PF02854.19	4.9e-76	2	3
ENSSLDP00000021630	MIF4G	PF02854.19	4.9e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000022342	UPF2-201	3720	XM_023409943	ENSSLDP00000021630	1239 (aa)	XP_023265711	-

Gene Model

Click here to download ENSSLDG00000016866's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000016866's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000016866	UPF2	100	80.986	ENSG00000151461	UPF2	99	80.438	Homo_sapiens
ENSSLDG00000016866	UPF2	100	94.122	ENSAPOG00000015837	UPF2	100	94.122	Acanthochromis_polyacanthus
ENSSLDG00000016866	UPF2	100	81.676	ENSAMEG00000004586	UPF2	99	81.597	Ailuropoda_melanoleuca
ENSSLDG00000016866	UPF2	100	92.868	ENSACIG00000018078	UPF2	100	93.260	Amphilophus_citrinellus
ENSSLDG00000016866	UPF2	100	96.154	ENSAOCG00000016766	UPF2	100	96.154	Amphiprion_ocellaris
ENSSLDG00000016866	UPF2	100	96.234	ENSAPEG00000019084	UPF2	100	96.234	Amphiprion_percula
ENSSLDG00000016866	UPF2	100	93.574	ENSATEG00000021677	UPF2	99	93.417	Anabas_testudineus
ENSSLDG00000016866	UPF2	100	80.048	ENSAPLG00000010287	UPF2	90	84.697	Anas_platyrhynchos
ENSSLDG00000016866	UPF2	100	81.284	ENSACAG00000009259	UPF2	99	81.441	Anolis_carolinensis
ENSSLDG00000016866	UPF2	97	75.020	ENSANAG00000028451	UPF2	93	77.094	Aotus_nancymaae
ENSSLDG00000016866	UPF2	100	92.555	ENSACLG00000012696	UPF2	99	92.947	Astatotilapia_calliptera
ENSSLDG00000016866	UPF2	100	86.599	ENSAMXG00000013700	UPF2	99	86.922	Astyanax_mexicanus
ENSSLDG00000016866	UPF2	100	81.519	ENSBTAG00000000288	UPF2	99	81.284	Bos_taurus
ENSSLDG00000016866	UPF2	100	80.191	ENSCJAG00000020685	UPF2	99	79.953	Callithrix_jacchus
ENSSLDG00000016866	UPF2	100	81.676	ENSCAFG00000004839	UPF2	99	81.441	Canis_familiaris
ENSSLDG00000016866	UPF2	100	83.213	ENSCAFG00020005882	UPF2	100	82.892	Canis_lupus_dingo
ENSSLDG00000016866	UPF2	100	81.676	ENSCHIG00000020359	UPF2	99	81.363	Capra_hircus
ENSSLDG00000016866	UPF2	100	81.585	ENSTSYG00000000935	UPF2	100	81.651	Carlito_syrichta
ENSSLDG00000016866	UPF2	73	79.249	ENSCAPG00000016658	UPF2	95	72.712	Cavia_aperea
ENSSLDG00000016866	UPF2	81	80.872	ENSCPOG00000008809	UPF2	92	81.437	Cavia_porcellus
ENSSLDG00000016866	UPF2	100	74.393	ENSCCAG00000035991	UPF2	99	73.767	Cebus_capucinus
ENSSLDG00000016866	UPF2	100	81.142	ENSCATG00000032679	UPF2	99	80.595	Cercocebus_atys
ENSSLDG00000016866	UPF2	100	80.721	ENSCLAG00000011434	UPF2	99	80.643	Chinchilla_lanigera
ENSSLDG00000016866	UPF2	100	81.142	ENSCSAG00000013372	UPF2	99	80.595	Chlorocebus_sabaeus
ENSSLDG00000016866	UPF2	80	89.579	ENSCHOG00000000422	UPF2	76	91.315	Choloepus_hoffmanni
ENSSLDG00000016866	UPF2	100	79.451	ENSCPBG00000027823	UPF2	93	81.655	Chrysemys_picta_bellii
ENSSLDG00000016866	UPF2	78	49.308	ENSCSAVG00000007772	-	78	51.166	Ciona_savignyi
ENSSLDG00000016866	UPF2	100	77.026	ENSCANG00000040396	UPF2	100	76.669	Colobus_angolensis_palliatus
ENSSLDG00000016866	UPF2	82	84.169	ENSCGRG00001019347	Upf2	99	81.098	Cricetulus_griseus_chok1gshd
ENSSLDG00000016866	UPF2	82	84.169	ENSCGRG00000017993	Upf2	99	81.098	Cricetulus_griseus_crigri
ENSSLDG00000016866	UPF2	99	89.103	ENSCSEG00000003520	UPF2	99	88.542	Cynoglossus_semilaevis
ENSSLDG00000016866	UPF2	99	90.751	ENSCVAG00000006167	UPF2	100	89.723	Cyprinodon_variegatus
ENSSLDG00000016866	UPF2	100	81.363	ENSDNOG00000018160	UPF2	99	80.986	Dasypus_novemcinctus
ENSSLDG00000016866	UPF2	82	84.366	ENSDORG00000002478	Upf2	99	81.113	Dipodomys_ordii
ENSSLDG00000016866	UPF2	89	36.692	FBgn0029992	Upf2	90	39.016	Drosophila_melanogaster
ENSSLDG00000016866	UPF2	57	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSSLDG00000016866	UPF2	66	71.523	ENSEBUG00000012448	-	97	67.862	Eptatretus_burgeri
ENSSLDG00000016866	UPF2	100	80.721	ENSEASG00005019274	UPF2	99	81.787	Equus_asinus_asinus
ENSSLDG00000016866	UPF2	100	80.721	ENSECAG00000017022	UPF2	99	80.486	Equus_caballus
ENSSLDG00000016866	UPF2	63	71.056	ENSEEUG00000007819	UPF2	69	87.565	Erinaceus_europaeus
ENSSLDG00000016866	UPF2	100	85.973	ENSELUG00000012014	UPF2	99	87.175	Esox_lucius
ENSSLDG00000016866	UPF2	100	85.635	ENSFCAG00000005785	UPF2	99	81.519	Felis_catus
ENSSLDG00000016866	UPF2	82	84.857	ENSFALG00000001889	UPF2	98	81.989	Ficedula_albicollis
ENSSLDG00000016866	UPF2	82	82.776	ENSFDAG00000014348	UPF2	99	80.157	Fukomys_damarensis
ENSSLDG00000016866	UPF2	99	90.981	ENSFHEG00000009826	UPF2	99	91.218	Fundulus_heteroclitus
ENSSLDG00000016866	UPF2	90	87.750	ENSGMOG00000005557	UPF2	100	87.392	Gadus_morhua
ENSSLDG00000016866	UPF2	100	82.081	ENSGALG00000033772	UPF2	99	82.201	Gallus_gallus
ENSSLDG00000016866	UPF2	100	90.267	ENSGAFG00000020867	UPF2	99	90.502	Gambusia_affinis
ENSSLDG00000016866	UPF2	100	91.216	ENSGACG00000001080	UPF2	100	91.922	Gasterosteus_aculeatus
ENSSLDG00000016866	UPF2	100	80.893	ENSGAGG00000002700	UPF2	99	80.595	Gopherus_agassizii
ENSSLDG00000016866	UPF2	100	80.986	ENSGGOG00000001479	UPF2	99	80.438	Gorilla_gorilla
ENSSLDG00000016866	UPF2	100	92.633	ENSHBUG00000004249	UPF2	100	93.025	Haplochromis_burtoni
ENSSLDG00000016866	UPF2	82	82.776	ENSHGLG00000015176	-	99	79.859	Heterocephalus_glaber_female
ENSSLDG00000016866	UPF2	100	71.429	ENSHGLG00000003822	-	99	71.193	Heterocephalus_glaber_female
ENSSLDG00000016866	UPF2	82	79.823	ENSHGLG00100010036	UPF2	100	76.217	Heterocephalus_glaber_male
ENSSLDG00000016866	UPF2	100	88.428	ENSHCOG00000004025	UPF2	99	88.898	Hippocampus_comes
ENSSLDG00000016866	UPF2	100	86.150	ENSIPUG00000015524	UPF2	99	84.363	Ictalurus_punctatus
ENSSLDG00000016866	UPF2	82	84.267	ENSSTOG00000013075	UPF2	99	81.113	Ictidomys_tridecemlineatus
ENSSLDG00000016866	UPF2	82	80.709	ENSJJAG00000004913	Upf2	99	80.784	Jaculus_jaculus
ENSSLDG00000016866	UPF2	99	91.153	ENSKMAG00000001071	UPF2	99	91.627	Kryptolebias_marmoratus
ENSSLDG00000016866	UPF2	82	93.110	ENSLBEG00000000728	-	93	93.110	Labrus_bergylta
ENSSLDG00000016866	UPF2	100	94.835	ENSLBEG00000016394	-	100	94.835	Labrus_bergylta
ENSSLDG00000016866	UPF2	99	74.903	ENSLACG00000015945	UPF2	100	75.488	Latimeria_chalumnae
ENSSLDG00000016866	UPF2	99	85.568	ENSLOCG00000015698	UPF2	99	85.804	Lepisosteus_oculatus
ENSSLDG00000016866	UPF2	100	81.142	ENSMFAG00000043865	UPF2	99	80.595	Macaca_fascicularis
ENSSLDG00000016866	UPF2	100	81.142	ENSMMUG00000008241	UPF2	99	80.595	Macaca_mulatta
ENSSLDG00000016866	UPF2	82	83.890	ENSMNEG00000008062	UPF2	99	83.202	Macaca_nemestrina
ENSSLDG00000016866	UPF2	100	74.257	ENSMLEG00000036120	UPF2	100	79.403	Mandrillus_leucophaeus
ENSSLDG00000016866	UPF2	100	96.064	ENSMAMG00000018276	UPF2	100	96.064	Mastacembelus_armatus
ENSSLDG00000016866	UPF2	100	92.555	ENSMZEG00005021595	UPF2	99	92.947	Maylandia_zebra
ENSSLDG00000016866	UPF2	99	81.604	ENSMGAG00000004573	UPF2	99	81.961	Meleagris_gallopavo
ENSSLDG00000016866	UPF2	82	81.613	ENSMAUG00000016512	Upf2	99	79.059	Mesocricetus_auratus
ENSSLDG00000016866	UPF2	100	83.213	ENSMICG00000001716	UPF2	100	82.329	Microcebus_murinus
ENSSLDG00000016866	UPF2	82	82.874	ENSMOCG00000008263	Upf2	99	80.063	Microtus_ochrogaster
ENSSLDG00000016866	UPF2	100	94.512	ENSMMOG00000006528	UPF2	100	94.350	Mola_mola
ENSSLDG00000016866	UPF2	82	81.809	ENSMODG00000016794	UPF2	99	81.441	Monodelphis_domestica
ENSSLDG00000016866	UPF2	100	94.188	ENSMALG00000002663	UPF2	100	94.586	Monopterus_albus
ENSSLDG00000016866	UPF2	82	84.169	MGP_CAROLIEiJ_G0023157	Upf2	99	83.217	Mus_caroli
ENSSLDG00000016866	UPF2	82	84.267	ENSMUSG00000043241	Upf2	99	81.412	Mus_musculus
ENSSLDG00000016866	UPF2	82	84.267	MGP_PahariEiJ_G0019217	Upf2	99	81.333	Mus_pahari
ENSSLDG00000016866	UPF2	82	84.562	MGP_SPRETEiJ_G0024075	Upf2	99	81.647	Mus_spretus
ENSSLDG00000016866	UPF2	100	81.441	ENSMPUG00000001064	UPF2	99	81.206	Mustela_putorius_furo
ENSSLDG00000016866	UPF2	100	80.923	ENSMLUG00000000228	UPF2	100	80.562	Myotis_lucifugus
ENSSLDG00000016866	UPF2	100	92.633	ENSNBRG00000013629	UPF2	99	93.025	Neolamprologus_brichardi
ENSSLDG00000016866	UPF2	100	81.064	ENSNLEG00000012058	UPF2	100	80.397	Nomascus_leucogenys
ENSSLDG00000016866	UPF2	72	94.366	ENSOPRG00000006801	-	73	94.366	Ochotona_princeps
ENSSLDG00000016866	UPF2	100	80.329	ENSODEG00000001290	UPF2	99	79.984	Octodon_degus
ENSSLDG00000016866	UPF2	100	92.241	ENSONIG00000017991	UPF2	99	92.633	Oreochromis_niloticus
ENSSLDG00000016866	UPF2	100	80.109	ENSOCUG00000006230	UPF2	100	78.861	Oryctolagus_cuniculus
ENSSLDG00000016866	UPF2	100	90.039	ENSORLG00000017189	UPF2	79	93.571	Oryzias_latipes
ENSSLDG00000016866	UPF2	100	90.118	ENSORLG00020005969	UPF2	79	93.670	Oryzias_latipes_hni
ENSSLDG00000016866	UPF2	100	90.118	ENSORLG00015005713	UPF2	79	93.670	Oryzias_latipes_hsok
ENSSLDG00000016866	UPF2	100	86.735	ENSOMEG00000023420	UPF2	98	87.127	Oryzias_melastigma
ENSSLDG00000016866	UPF2	100	81.363	ENSOGAG00000005796	UPF2	99	81.049	Otolemur_garnettii
ENSSLDG00000016866	UPF2	100	81.470	ENSOARG00000014587	UPF2	99	81.314	Ovis_aries
ENSSLDG00000016866	UPF2	82	83.104	ENSPPAG00000037953	UPF2	100	78.774	Pan_paniscus
ENSSLDG00000016866	UPF2	100	81.284	ENSPPRG00000000690	UPF2	99	81.519	Panthera_pardus
ENSSLDG00000016866	UPF2	100	81.284	ENSPTIG00000008867	UPF2	99	81.519	Panthera_tigris_altaica
ENSSLDG00000016866	UPF2	100	80.986	ENSPTRG00000002291	UPF2	99	80.438	Pan_troglodytes
ENSSLDG00000016866	UPF2	100	81.142	ENSPANG00000023399	UPF2	99	80.595	Papio_anubis
ENSSLDG00000016866	UPF2	100	84.465	ENSPKIG00000025502	UPF2	99	83.268	Paramormyrops_kingsleyae
ENSSLDG00000016866	UPF2	61	82.082	ENSPSIG00000015158	UPF2	95	78.421	Pelodiscus_sinensis
ENSSLDG00000016866	UPF2	100	88.082	ENSPMGG00000005259	UPF2	100	88.328	Periophthalmus_magnuspinnatus
ENSSLDG00000016866	UPF2	74	76.657	ENSPEMG00000015731	Upf2	79	76.657	Peromyscus_maniculatus_bairdii
ENSSLDG00000016866	UPF2	82	84.169	ENSPCIG00000006656	UPF2	100	81.094	Phascolarctos_cinereus
ENSSLDG00000016866	UPF2	100	90.581	ENSPFOG00000017118	UPF2	99	90.816	Poecilia_formosa
ENSSLDG00000016866	UPF2	100	90.659	ENSPLAG00000005094	UPF2	99	90.895	Poecilia_latipinna
ENSSLDG00000016866	UPF2	100	90.502	ENSPMEG00000017009	UPF2	99	90.738	Poecilia_mexicana
ENSSLDG00000016866	UPF2	100	90.450	ENSPREG00000021880	UPF2	100	90.845	Poecilia_reticulata
ENSSLDG00000016866	UPF2	65	82.458	ENSPPYG00000002089	-	99	82.100	Pongo_abelii
ENSSLDG00000016866	UPF2	100	69.146	ENSPCAG00000000684	UPF2	99	69.381	Procavia_capensis
ENSSLDG00000016866	UPF2	100	82.131	ENSPCOG00000021656	UPF2	100	81.767	Propithecus_coquereli
ENSSLDG00000016866	UPF2	100	74.883	ENSPVAG00000017286	UPF2	99	74.668	Pteropus_vampyrus
ENSSLDG00000016866	UPF2	100	90.047	ENSPNYG00000017096	UPF2	100	90.439	Pundamilia_nyererei
ENSSLDG00000016866	UPF2	100	86.463	ENSPNAG00000009357	UPF2	100	86.063	Pygocentrus_nattereri
ENSSLDG00000016866	UPF2	82	82.203	ENSRNOG00000023593	Upf2	98	94.318	Rattus_norvegicus
ENSSLDG00000016866	UPF2	100	78.802	ENSRBIG00000037780	UPF2	100	78.442	Rhinopithecus_bieti
ENSSLDG00000016866	UPF2	100	79.764	ENSRROG00000043547	UPF2	100	79.403	Rhinopithecus_roxellana
ENSSLDG00000016866	UPF2	100	80.895	ENSSBOG00000020012	UPF2	99	80.482	Saimiri_boliviensis_boliviensis
ENSSLDG00000016866	UPF2	100	83.346	ENSSFOG00015023788	upf2	100	82.680	Scleropages_formosus
ENSSLDG00000016866	UPF2	90	88.976	ENSSMAG00000007637	UPF2	100	89.449	Scophthalmus_maximus
ENSSLDG00000016866	UPF2	100	99.193	ENSSDUG00000017244	UPF2	100	99.193	Seriola_dumerili
ENSSLDG00000016866	UPF2	100	80.031	ENSSARG00000008615	UPF2	99	80.423	Sorex_araneus
ENSSLDG00000016866	UPF2	100	81.380	ENSSPUG00000014544	UPF2	99	80.785	Sphenodon_punctatus
ENSSLDG00000016866	UPF2	67	82.414	ENSSSCG00000011117	-	99	82.299	Sus_scrofa
ENSSLDG00000016866	UPF2	99	81.818	ENSTGUG00000002163	-	100	82.132	Taeniopygia_guttata
ENSSLDG00000016866	UPF2	100	90.204	ENSTRUG00000007519	UPF2	99	90.047	Takifugu_rubripes
ENSSLDG00000016866	UPF2	100	87.559	ENSTNIG00000004453	UPF2	78	88.229	Tetraodon_nigroviridis
ENSSLDG00000016866	UPF2	82	75.689	ENSTBEG00000012679	UPF2	93	73.968	Tupaia_belangeri
ENSSLDG00000016866	UPF2	100	80.408	ENSTTRG00000016388	UPF2	99	80.094	Tursiops_truncatus
ENSSLDG00000016866	UPF2	89	94.382	ENSUAMG00000023560	UPF2	95	94.382	Ursus_americanus
ENSSLDG00000016866	UPF2	100	81.597	ENSUMAG00000012953	UPF2	95	81.363	Ursus_maritimus
ENSSLDG00000016866	UPF2	84	96.774	ENSVPAG00000006763	UPF2	82	96.774	Vicugna_pacos
ENSSLDG00000016866	UPF2	100	81.676	ENSVVUG00000006166	UPF2	99	81.363	Vulpes_vulpes
ENSSLDG00000016866	UPF2	100	76.448	ENSXETG00000033103	UPF2	91	82.109	Xenopus_tropicalis
ENSSLDG00000016866	UPF2	100	90.659	ENSXCOG00000011604	UPF2	100	90.895	Xiphophorus_couchianus
ENSSLDG00000016866	UPF2	100	90.659	ENSXMAG00000017209	UPF2	99	90.895	Xiphophorus_maculatus