EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000016870 (Gene tree)
Gene ID: -
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 1575 bases
Position: chrPEQF01099022.1:4757-6331
Accession: ZDB-GENE-070629-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000021597	LSM	PF01423.22	1.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000022308	-	228	-	ENSSLDP00000021597	75 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000016870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000016870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000016870	lsm8	64	45.833	ENSSLDG00000004364	-	60	45.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000016870	lsm8	100	97.333	ENSG00000128534	LSM8	100	97.333	Homo_sapiens
ENSSLDG00000016870	lsm8	100	100.000	ENSAPOG00000008649	lsm8	78	100.000	Acanthochromis_polyacanthus
ENSSLDG00000016870	lsm8	100	97.333	ENSAMEG00000001162	LSM8	78	97.333	Ailuropoda_melanoleuca
ENSSLDG00000016870	lsm8	100	100.000	ENSACIG00000014694	lsm8	100	100.000	Amphilophus_citrinellus
ENSSLDG00000016870	lsm8	100	100.000	ENSAOCG00000013926	lsm8	78	100.000	Amphiprion_ocellaris
ENSSLDG00000016870	lsm8	100	100.000	ENSAPEG00000023502	lsm8	78	100.000	Amphiprion_percula
ENSSLDG00000016870	lsm8	100	100.000	ENSATEG00000023432	lsm8	100	100.000	Anabas_testudineus
ENSSLDG00000016870	lsm8	100	98.667	ENSAPLG00000005115	LSM8	76	98.667	Anas_platyrhynchos
ENSSLDG00000016870	lsm8	100	97.333	ENSANAG00000027771	LSM8	100	94.595	Aotus_nancymaae
ENSSLDG00000016870	lsm8	100	100.000	ENSACLG00000011253	lsm8	78	100.000	Astatotilapia_calliptera
ENSSLDG00000016870	lsm8	100	98.667	ENSAMXG00000042902	lsm8	78	98.667	Astyanax_mexicanus
ENSSLDG00000016870	lsm8	100	97.333	ENSBTAG00000012649	LSM8	78	97.333	Bos_taurus
ENSSLDG00000016870	lsm8	97	57.534	WBGene00003082	lsm-8	74	57.534	Caenorhabditis_elegans
ENSSLDG00000016870	lsm8	100	97.333	ENSCJAG00000046406	LSM8	100	94.595	Callithrix_jacchus
ENSSLDG00000016870	lsm8	97	98.630	ENSCAFG00000016459	LSM8	74	98.630	Canis_familiaris
ENSSLDG00000016870	lsm8	100	97.333	ENSCAFG00020007643	-	78	97.333	Canis_lupus_dingo
ENSSLDG00000016870	lsm8	85	96.875	ENSCAFG00020012800	-	50	96.875	Canis_lupus_dingo
ENSSLDG00000016870	lsm8	100	97.333	ENSCHIG00000014201	LSM8	80	97.333	Capra_hircus
ENSSLDG00000016870	lsm8	100	97.333	ENSTSYG00000032434	LSM8	78	97.333	Carlito_syrichta
ENSSLDG00000016870	lsm8	99	95.946	ENSCAPG00000008253	LSM8	100	95.946	Cavia_aperea
ENSSLDG00000016870	lsm8	100	97.333	ENSCPOG00000035673	LSM8	78	97.333	Cavia_porcellus
ENSSLDG00000016870	lsm8	100	97.333	ENSCCAG00000021329	LSM8	100	94.595	Cebus_capucinus
ENSSLDG00000016870	lsm8	100	97.333	ENSCATG00000045302	LSM8	100	94.595	Cercocebus_atys
ENSSLDG00000016870	lsm8	100	97.333	ENSCLAG00000003726	LSM8	78	97.333	Chinchilla_lanigera
ENSSLDG00000016870	lsm8	100	97.333	ENSCSAG00000010802	-	78	97.333	Chlorocebus_sabaeus
ENSSLDG00000016870	lsm8	100	96.000	ENSCSAG00000019007	-	78	96.000	Chlorocebus_sabaeus
ENSSLDG00000016870	lsm8	100	97.333	ENSCPBG00000008154	LSM8	77	97.333	Chrysemys_picta_bellii
ENSSLDG00000016870	lsm8	100	78.667	ENSCING00000024877	-	78	78.667	Ciona_intestinalis
ENSSLDG00000016870	lsm8	100	97.333	ENSCANG00000040728	LSM8	100	94.595	Colobus_angolensis_palliatus
ENSSLDG00000016870	lsm8	100	97.333	ENSCGRG00001000450	Lsm8	78	97.333	Cricetulus_griseus_chok1gshd
ENSSLDG00000016870	lsm8	100	97.333	ENSCGRG00000005587	Lsm8	88	97.333	Cricetulus_griseus_crigri
ENSSLDG00000016870	lsm8	96	98.611	ENSCSEG00000004164	lsm8	79	98.611	Cynoglossus_semilaevis
ENSSLDG00000016870	lsm8	100	98.667	ENSCVAG00000020547	lsm8	78	98.667	Cyprinodon_variegatus
ENSSLDG00000016870	lsm8	100	97.333	ENSDARG00000091656	lsm8	78	97.333	Danio_rerio
ENSSLDG00000016870	lsm8	100	97.333	ENSDNOG00000034613	LSM8	78	97.333	Dasypus_novemcinctus
ENSSLDG00000016870	lsm8	100	97.333	ENSDORG00000027868	Lsm8	78	97.333	Dipodomys_ordii
ENSSLDG00000016870	lsm8	97	72.603	FBgn0035271	CG2021	77	72.603	Drosophila_melanogaster
ENSSLDG00000016870	lsm8	100	98.667	ENSETEG00000011594	LSM8	78	98.667	Echinops_telfairi
ENSSLDG00000016870	lsm8	99	93.243	ENSEBUG00000012017	lsm8	100	93.243	Eptatretus_burgeri
ENSSLDG00000016870	lsm8	100	97.333	ENSECAG00000024025	LSM8	71	97.222	Equus_caballus
ENSSLDG00000016870	lsm8	100	96.000	ENSELUG00000010138	lsm8	78	96.000	Esox_lucius
ENSSLDG00000016870	lsm8	89	71.642	ENSFCAG00000044794	-	66	71.642	Felis_catus
ENSSLDG00000016870	lsm8	100	97.333	ENSFCAG00000036620	-	78	97.333	Felis_catus
ENSSLDG00000016870	lsm8	100	98.667	ENSFALG00000010023	LSM8	78	98.667	Ficedula_albicollis
ENSSLDG00000016870	lsm8	100	97.333	ENSFDAG00000019530	LSM8	78	97.333	Fukomys_damarensis
ENSSLDG00000016870	lsm8	100	100.000	ENSFHEG00000013729	lsm8	78	100.000	Fundulus_heteroclitus
ENSSLDG00000016870	lsm8	100	98.667	ENSGALG00000009110	LSM8	78	98.667	Gallus_gallus
ENSSLDG00000016870	lsm8	100	98.667	ENSGAFG00000001135	lsm8	78	98.667	Gambusia_affinis
ENSSLDG00000016870	lsm8	100	97.333	ENSGAGG00000017366	LSM8	78	97.333	Gopherus_agassizii
ENSSLDG00000016870	lsm8	100	97.333	ENSGGOG00000041883	LSM8	78	97.333	Gorilla_gorilla
ENSSLDG00000016870	lsm8	100	100.000	ENSHBUG00000003646	lsm8	78	100.000	Haplochromis_burtoni
ENSSLDG00000016870	lsm8	63	100.000	ENSHGLG00000001988	-	68	100.000	Heterocephalus_glaber_female
ENSSLDG00000016870	lsm8	100	90.667	ENSHGLG00000019782	-	78	90.667	Heterocephalus_glaber_female
ENSSLDG00000016870	lsm8	100	92.000	ENSHGLG00100012166	-	78	92.000	Heterocephalus_glaber_male
ENSSLDG00000016870	lsm8	97	95.890	ENSHGLG00100003934	-	73	95.890	Heterocephalus_glaber_male
ENSSLDG00000016870	lsm8	100	98.667	ENSHCOG00000005037	lsm8	78	98.667	Hippocampus_comes
ENSSLDG00000016870	lsm8	100	98.667	ENSIPUG00000019811	NAA38	78	98.667	Ictalurus_punctatus
ENSSLDG00000016870	lsm8	100	84.000	ENSSTOG00000034801	-	69	84.000	Ictidomys_tridecemlineatus
ENSSLDG00000016870	lsm8	100	97.333	ENSSTOG00000009039	LSM8	78	97.333	Ictidomys_tridecemlineatus
ENSSLDG00000016870	lsm8	100	97.333	ENSJJAG00000009031	Lsm8	77	97.333	Jaculus_jaculus
ENSSLDG00000016870	lsm8	100	100.000	ENSKMAG00000018983	lsm8	78	100.000	Kryptolebias_marmoratus
ENSSLDG00000016870	lsm8	100	96.000	ENSLACG00000010231	LSM8	78	96.000	Latimeria_chalumnae
ENSSLDG00000016870	lsm8	100	97.333	ENSLOCG00000015580	lsm8	78	97.333	Lepisosteus_oculatus
ENSSLDG00000016870	lsm8	100	97.333	ENSLAFG00000011242	LSM8	77	97.333	Loxodonta_africana
ENSSLDG00000016870	lsm8	100	94.667	ENSMFAG00000013044	-	78	94.667	Macaca_fascicularis
ENSSLDG00000016870	lsm8	100	97.333	ENSMFAG00000035798	LSM8	100	94.595	Macaca_fascicularis
ENSSLDG00000016870	lsm8	100	97.333	ENSMMUG00000046401	LSM8	100	94.595	Macaca_mulatta
ENSSLDG00000016870	lsm8	100	97.333	ENSMNEG00000036764	-	100	94.595	Macaca_nemestrina
ENSSLDG00000016870	lsm8	100	94.667	ENSMNEG00000011141	-	100	94.667	Macaca_nemestrina
ENSSLDG00000016870	lsm8	100	97.333	ENSMLEG00000035828	-	100	94.595	Mandrillus_leucophaeus
ENSSLDG00000016870	lsm8	100	81.333	ENSMLEG00000039324	-	76	81.333	Mandrillus_leucophaeus
ENSSLDG00000016870	lsm8	100	100.000	ENSMAMG00000018839	lsm8	100	100.000	Mastacembelus_armatus
ENSSLDG00000016870	lsm8	100	100.000	ENSMZEG00005019138	lsm8	78	100.000	Maylandia_zebra
ENSSLDG00000016870	lsm8	100	98.667	ENSMGAG00000008808	LSM8	78	98.667	Meleagris_gallopavo
ENSSLDG00000016870	lsm8	100	89.333	ENSMAUG00000015721	-	78	89.333	Mesocricetus_auratus
ENSSLDG00000016870	lsm8	100	76.000	ENSMAUG00000015356	-	75	76.000	Mesocricetus_auratus
ENSSLDG00000016870	lsm8	99	87.838	ENSMAUG00000020287	-	100	87.838	Mesocricetus_auratus
ENSSLDG00000016870	lsm8	100	97.333	ENSMICG00000042730	LSM8	78	97.333	Microcebus_murinus
ENSSLDG00000016870	lsm8	100	97.333	ENSMOCG00000001688	Lsm8	78	97.333	Microtus_ochrogaster
ENSSLDG00000016870	lsm8	100	100.000	ENSMMOG00000006046	lsm8	100	100.000	Mola_mola
ENSSLDG00000016870	lsm8	97	85.333	ENSMODG00000015729	LSM8	96	85.333	Monodelphis_domestica
ENSSLDG00000016870	lsm8	100	100.000	ENSMALG00000000405	lsm8	78	100.000	Monopterus_albus
ENSSLDG00000016870	lsm8	100	97.333	MGP_CAROLIEiJ_G0028125	-	78	97.333	Mus_caroli
ENSSLDG00000016870	lsm8	100	97.333	ENSMUSG00000044155	Lsm8	78	97.333	Mus_musculus
ENSSLDG00000016870	lsm8	100	97.333	MGP_PahariEiJ_G0021881	Lsm8	100	97.333	Mus_pahari
ENSSLDG00000016870	lsm8	100	97.333	MGP_SPRETEiJ_G0029125	-	78	97.333	Mus_spretus
ENSSLDG00000016870	lsm8	100	97.333	ENSMLUG00000006837	-	78	97.333	Myotis_lucifugus
ENSSLDG00000016870	lsm8	100	96.000	ENSMLUG00000027762	-	78	96.000	Myotis_lucifugus
ENSSLDG00000016870	lsm8	100	97.333	ENSNGAG00000016554	Lsm8	78	97.333	Nannospalax_galili
ENSSLDG00000016870	lsm8	100	100.000	ENSNBRG00000014441	lsm8	78	100.000	Neolamprologus_brichardi
ENSSLDG00000016870	lsm8	100	97.333	ENSNLEG00000011768	LSM8	78	97.333	Nomascus_leucogenys
ENSSLDG00000016870	lsm8	100	84.000	ENSMEUG00000007801	LSM8	78	84.000	Notamacropus_eugenii
ENSSLDG00000016870	lsm8	100	97.333	ENSOPRG00000014809	LSM8	88	97.333	Ochotona_princeps
ENSSLDG00000016870	lsm8	87	81.538	ENSODEG00000020290	-	76	81.538	Octodon_degus
ENSSLDG00000016870	lsm8	100	97.333	ENSODEG00000000418	-	78	97.333	Octodon_degus
ENSSLDG00000016870	lsm8	100	97.333	ENSOANG00000014536	LSM8	78	97.333	Ornithorhynchus_anatinus
ENSSLDG00000016870	lsm8	100	97.333	ENSOCUG00000017359	LSM8	77	97.333	Oryctolagus_cuniculus
ENSSLDG00000016870	lsm8	96	100.000	ENSORLG00000017432	lsm8	77	100.000	Oryzias_latipes
ENSSLDG00000016870	lsm8	96	100.000	ENSORLG00020004376	lsm8	77	100.000	Oryzias_latipes_hni
ENSSLDG00000016870	lsm8	100	100.000	ENSORLG00015003757	lsm8	78	100.000	Oryzias_latipes_hsok
ENSSLDG00000016870	lsm8	92	100.000	ENSOMEG00000022509	lsm8	83	96.000	Oryzias_melastigma
ENSSLDG00000016870	lsm8	100	97.333	ENSOGAG00000013377	LSM8	78	97.333	Otolemur_garnettii
ENSSLDG00000016870	lsm8	100	97.333	ENSOARG00000017974	LSM8	78	97.333	Ovis_aries
ENSSLDG00000016870	lsm8	100	97.333	ENSPPAG00000043228	-	100	97.333	Pan_paniscus
ENSSLDG00000016870	lsm8	100	97.333	ENSPPRG00000006444	LSM8	78	97.333	Panthera_pardus
ENSSLDG00000016870	lsm8	100	97.333	ENSPTIG00000004722	LSM8	78	97.333	Panthera_tigris_altaica
ENSSLDG00000016870	lsm8	100	97.333	ENSPTRG00000046596	-	100	97.333	Pan_troglodytes
ENSSLDG00000016870	lsm8	100	97.333	ENSPANG00000035470	-	100	94.595	Papio_anubis
ENSSLDG00000016870	lsm8	100	93.333	ENSPANG00000019395	-	78	93.333	Papio_anubis
ENSSLDG00000016870	lsm8	100	97.333	ENSPKIG00000006092	lsm8	76	97.333	Paramormyrops_kingsleyae
ENSSLDG00000016870	lsm8	100	97.333	ENSPSIG00000017054	LSM8	100	97.333	Pelodiscus_sinensis
ENSSLDG00000016870	lsm8	100	100.000	ENSPMGG00000016442	lsm8	100	100.000	Periophthalmus_magnuspinnatus
ENSSLDG00000016870	lsm8	99	94.595	ENSPEMG00000009153	Lsm8	100	94.595	Peromyscus_maniculatus_bairdii
ENSSLDG00000016870	lsm8	96	98.611	ENSPCIG00000021467	LSM8	76	98.611	Phascolarctos_cinereus
ENSSLDG00000016870	lsm8	100	98.667	ENSPFOG00000012340	lsm8	78	98.667	Poecilia_formosa
ENSSLDG00000016870	lsm8	100	98.667	ENSPLAG00000000516	lsm8	78	98.667	Poecilia_latipinna
ENSSLDG00000016870	lsm8	100	98.667	ENSPMEG00000022567	lsm8	78	98.667	Poecilia_mexicana
ENSSLDG00000016870	lsm8	97	87.500	ENSPREG00000005527	lsm8	72	87.500	Poecilia_reticulata
ENSSLDG00000016870	lsm8	100	97.333	ENSPPYG00000017942	LSM8	78	97.333	Pongo_abelii
ENSSLDG00000016870	lsm8	99	72.973	ENSPCOG00000017982	-	74	72.973	Propithecus_coquereli
ENSSLDG00000016870	lsm8	100	97.333	ENSPCOG00000003309	-	78	97.333	Propithecus_coquereli
ENSSLDG00000016870	lsm8	100	96.000	ENSPVAG00000000990	LSM8	88	96.000	Pteropus_vampyrus
ENSSLDG00000016870	lsm8	100	100.000	ENSPNYG00000011448	lsm8	78	100.000	Pundamilia_nyererei
ENSSLDG00000016870	lsm8	100	98.667	ENSPNAG00000010252	lsm8	78	98.667	Pygocentrus_nattereri
ENSSLDG00000016870	lsm8	100	97.333	ENSRNOG00000058677	Lsm8	78	97.333	Rattus_norvegicus
ENSSLDG00000016870	lsm8	100	97.333	ENSRBIG00000032851	LSM8	100	94.595	Rhinopithecus_bieti
ENSSLDG00000016870	lsm8	100	97.333	ENSRROG00000039618	LSM8	100	94.595	Rhinopithecus_roxellana
ENSSLDG00000016870	lsm8	100	97.333	ENSSBOG00000023223	LSM8	100	94.595	Saimiri_boliviensis_boliviensis
ENSSLDG00000016870	lsm8	100	97.333	ENSSHAG00000018435	-	78	97.333	Sarcophilus_harrisii
ENSSLDG00000016870	lsm8	100	96.000	ENSSFOG00015004412	lsm8	78	96.000	Scleropages_formosus
ENSSLDG00000016870	lsm8	100	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSSLDG00000016870	lsm8	100	100.000	ENSSDUG00000014702	lsm8	78	100.000	Seriola_dumerili
ENSSLDG00000016870	lsm8	96	97.222	ENSSARG00000009628	-	100	97.222	Sorex_araneus
ENSSLDG00000016870	lsm8	100	97.333	ENSSPUG00000017419	LSM8	78	97.333	Sphenodon_punctatus
ENSSLDG00000016870	lsm8	100	100.000	ENSSPAG00000021422	lsm8	78	100.000	Stegastes_partitus
ENSSLDG00000016870	lsm8	100	97.333	ENSSSCG00000021652	LSM8	78	97.333	Sus_scrofa
ENSSLDG00000016870	lsm8	100	97.333	ENSTGUG00000016823	-	78	97.333	Taeniopygia_guttata
ENSSLDG00000016870	lsm8	100	98.667	ENSTGUG00000004730	-	78	98.667	Taeniopygia_guttata
ENSSLDG00000016870	lsm8	100	100.000	ENSTRUG00000025192	lsm8	78	100.000	Takifugu_rubripes
ENSSLDG00000016870	lsm8	100	100.000	ENSTNIG00000002864	lsm8	78	100.000	Tetraodon_nigroviridis
ENSSLDG00000016870	lsm8	100	97.333	ENSTTRG00000001023	LSM8	78	97.333	Tursiops_truncatus
ENSSLDG00000016870	lsm8	100	97.333	ENSUAMG00000006943	-	78	97.333	Ursus_americanus
ENSSLDG00000016870	lsm8	100	97.333	ENSUMAG00000003073	LSM8	80	97.333	Ursus_maritimus
ENSSLDG00000016870	lsm8	100	97.333	ENSVPAG00000001530	LSM8	78	97.333	Vicugna_pacos
ENSSLDG00000016870	lsm8	100	94.667	ENSVVUG00000013248	-	82	94.667	Vulpes_vulpes
ENSSLDG00000016870	lsm8	100	97.333	ENSXETG00000021829	lsm8	77	97.333	Xenopus_tropicalis
ENSSLDG00000016870	lsm8	100	97.333	ENSXCOG00000012938	lsm8	79	97.333	Xiphophorus_couchianus
ENSSLDG00000016870	lsm8	100	98.667	ENSXMAG00000025919	lsm8	78	98.667	Xiphophorus_maculatus