EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000017172 (Gene tree)
Gene ID: -
Gene Symbol: msi2a
Alias: cb746|fi47b09|msi2|wu:fb02d08|wu:fi32d12|wu:fi47b09
Full Name: musashi RNA binding protein 2
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 215336 bases
Position: chrPEQF01099060.1:30356-245691
Accession: 111663827
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000022008	RRM_1	PF00076.22	2e-33	1	2
ENSSLDP00000022008	RRM_1	PF00076.22	2e-33	2	2
ENSSLDP00000022024	RRM_1	PF00076.22	4.5e-33	1	2
ENSSLDP00000022024	RRM_1	PF00076.22	4.5e-33	2	2
ENSSLDP00000021990	RRM_1	PF00076.22	4.5e-33	1	2
ENSSLDP00000021990	RRM_1	PF00076.22	4.5e-33	2	2
ENSSLDP00000022044	RRM_1	PF00076.22	4.1e-29	1	2
ENSSLDP00000022044	RRM_1	PF00076.22	4.1e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000022710	-	1351	XM_023418166	ENSSLDP00000021990	408 (aa)	XP_023273934	UPI0009B3B6F2
ENSSLDT00000022744	-	1377	XM_023418167	ENSSLDP00000022024	407 (aa)	XP_023273935	UPI0004963CD1
ENSSLDT00000022728	-	1051	XM_023418172	ENSSLDP00000022008	308 (aa)	XP_023273940	UPI000C6F5D8F
ENSSLDT00000022764	-	942	XM_023418173	ENSSLDP00000022044	313 (aa)	XP_023273941	-

Gene Model

Click here to download ENSSLDG00000017172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000017172's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000017172	msi2a	56	42.282	ENSSLDG00000003718	hnrnpa1a	80	40.506
ENSSLDG00000017172	msi2a	56	40.116	ENSSLDG00000018999	HNRNPA3	95	34.737
ENSSLDG00000017172	msi2a	65	44.976	ENSSLDG00000015962	hnrnpd	65	44.976
ENSSLDG00000017172	msi2a	100	69.301	ENSSLDG00000018706	-	100	69.301
ENSSLDG00000017172	msi2a	56	48.851	ENSSLDG00000001911	-	58	47.090
ENSSLDG00000017172	msi2a	62	41.667	ENSSLDG00000024685	-	90	41.667
ENSSLDG00000017172	msi2a	55	37.791	ENSSLDG00000024705	-	85	38.251
ENSSLDG00000017172	msi2a	100	71.601	ENSSLDG00000016832	MSI1	96	77.165
ENSSLDG00000017172	msi2a	61	48.421	ENSSLDG00000005199	hnrnpaba	68	46.890

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000017172	msi2a	100	88.110	ENSG00000153944	MSI2	97	93.227	Homo_sapiens
ENSSLDG00000017172	msi2a	100	100.000	ENSAPOG00000001658	msi2a	100	100.000	Acanthochromis_polyacanthus
ENSSLDG00000017172	msi2a	98	84.356	ENSAMEG00000002697	MSI2	99	85.358	Ailuropoda_melanoleuca
ENSSLDG00000017172	msi2a	95	100.000	ENSACIG00000009475	msi2a	100	90.511	Amphilophus_citrinellus
ENSSLDG00000017172	msi2a	56	91.111	ENSAOCG00000014822	msi2a	69	91.111	Amphiprion_ocellaris
ENSSLDG00000017172	msi2a	100	100.000	ENSAPEG00000007706	msi2a	100	100.000	Amphiprion_percula
ENSSLDG00000017172	msi2a	100	100.000	ENSATEG00000010498	msi2a	100	100.000	Anabas_testudineus
ENSSLDG00000017172	msi2a	93	93.165	ENSATEG00000003301	-	100	93.165	Anabas_testudineus
ENSSLDG00000017172	msi2a	89	93.478	ENSACAG00000005452	MSI2	88	75.871	Anolis_carolinensis
ENSSLDG00000017172	msi2a	100	88.110	ENSANAG00000037827	MSI2	97	93.227	Aotus_nancymaae
ENSSLDG00000017172	msi2a	100	99.509	ENSACLG00000007752	msi2a	100	99.588	Astatotilapia_calliptera
ENSSLDG00000017172	msi2a	100	96.296	ENSAMXG00000010474	msi2b	100	94.569	Astyanax_mexicanus
ENSSLDG00000017172	msi2a	100	96.296	ENSAMXG00000032796	msi2a	97	96.414	Astyanax_mexicanus
ENSSLDG00000017172	msi2a	98	88.961	ENSBTAG00000004406	MSI2	94	94.348	Bos_taurus
ENSSLDG00000017172	msi2a	75	59.514	WBGene00003423	msi-1	73	61.638	Caenorhabditis_elegans
ENSSLDG00000017172	msi2a	100	88.110	ENSCJAG00000013998	MSI2	97	93.227	Callithrix_jacchus
ENSSLDG00000017172	msi2a	93	87.702	ENSCAFG00020025620	MSI2	81	85.893	Canis_lupus_dingo
ENSSLDG00000017172	msi2a	100	87.195	ENSCHIG00000016580	MSI2	97	91.633	Capra_hircus
ENSSLDG00000017172	msi2a	93	88.298	ENSCPOG00000034042	MSI2	99	88.298	Cavia_porcellus
ENSSLDG00000017172	msi2a	100	88.110	ENSCCAG00000033927	MSI2	97	93.227	Cebus_capucinus
ENSSLDG00000017172	msi2a	93	92.444	ENSCATG00000040879	MSI2	97	92.829	Cercocebus_atys
ENSSLDG00000017172	msi2a	100	83.526	ENSCLAG00000014325	MSI2	100	83.526	Chinchilla_lanigera
ENSSLDG00000017172	msi2a	100	88.110	ENSCSAG00000005633	MSI2	97	93.227	Chlorocebus_sabaeus
ENSSLDG00000017172	msi2a	89	65.827	ENSCHOG00000008660	MSI2	83	86.275	Choloepus_hoffmanni
ENSSLDG00000017172	msi2a	93	94.581	ENSCPBG00000009942	MSI2	89	94.475	Chrysemys_picta_bellii
ENSSLDG00000017172	msi2a	87	53.171	ENSCING00000018579	-	90	53.659	Ciona_intestinalis
ENSSLDG00000017172	msi2a	87	53.667	ENSCSAVG00000010397	-	95	53.667	Ciona_savignyi
ENSSLDG00000017172	msi2a	93	92.444	ENSCANG00000036414	MSI2	100	85.358	Colobus_angolensis_palliatus
ENSSLDG00000017172	msi2a	100	87.538	ENSCGRG00001013330	Msi2	97	92.829	Cricetulus_griseus_chok1gshd
ENSSLDG00000017172	msi2a	98	84.098	ENSCGRG00000003141	Msi2	97	85.093	Cricetulus_griseus_crigri
ENSSLDG00000017172	msi2a	61	77.596	ENSCSEG00000013549	msi2a	100	77.596	Cynoglossus_semilaevis
ENSSLDG00000017172	msi2a	100	81.173	ENSCSEG00000003266	-	100	81.173	Cynoglossus_semilaevis
ENSSLDG00000017172	msi2a	81	81.443	ENSCSEG00000013557	msi2a	79	93.846	Cynoglossus_semilaevis
ENSSLDG00000017172	msi2a	96	99.667	ENSCVAG00000017075	msi2a	99	99.667	Cyprinodon_variegatus
ENSSLDG00000017172	msi2a	95	93.827	ENSDARG00000033901	msi2a	100	84.275	Danio_rerio
ENSSLDG00000017172	msi2a	100	93.627	ENSDARG00000032614	msi2b	100	97.030	Danio_rerio
ENSSLDG00000017172	msi2a	93	93.056	ENSDNOG00000014501	MSI2	100	93.056	Dasypus_novemcinctus
ENSSLDG00000017172	msi2a	81	81.726	ENSDORG00000005394	Msi2	79	89.231	Dipodomys_ordii
ENSSLDG00000017172	msi2a	55	96.460	ENSDORG00000028440	-	100	96.460	Dipodomys_ordii
ENSSLDG00000017172	msi2a	97	52.478	FBgn0260943	Rbp6	88	65.278	Drosophila_melanogaster
ENSSLDG00000017172	msi2a	72	72.368	ENSETEG00000012450	-	64	72.368	Echinops_telfairi
ENSSLDG00000017172	msi2a	93	63.578	ENSEBUG00000006732	msi2a	75	79.524	Eptatretus_burgeri
ENSSLDG00000017172	msi2a	93	90.301	ENSEASG00005002965	MSI2	94	78.902	Equus_asinus_asinus
ENSSLDG00000017172	msi2a	93	91.739	ENSECAG00000011435	MSI2	100	81.356	Equus_caballus
ENSSLDG00000017172	msi2a	86	77.470	ENSEEUG00000007810	MSI2	100	77.470	Erinaceus_europaeus
ENSSLDG00000017172	msi2a	100	95.902	ENSELUG00000001361	msi2b	100	88.657	Esox_lucius
ENSSLDG00000017172	msi2a	100	95.208	ENSELUG00000011747	msi2a	100	95.208	Esox_lucius
ENSSLDG00000017172	msi2a	100	88.110	ENSFCAG00000041686	MSI2	97	93.227	Felis_catus
ENSSLDG00000017172	msi2a	51	75.000	ENSFCAG00000033787	-	82	75.000	Felis_catus
ENSSLDG00000017172	msi2a	97	85.358	ENSFDAG00000016118	MSI2	100	85.358	Fukomys_damarensis
ENSSLDG00000017172	msi2a	100	100.000	ENSFHEG00000000084	msi2a	100	99.509	Fundulus_heteroclitus
ENSSLDG00000017172	msi2a	59	97.115	ENSGMOG00000007596	-	100	97.115	Gadus_morhua
ENSSLDG00000017172	msi2a	100	82.659	ENSGALG00000005567	MSI2	100	82.659	Gallus_gallus
ENSSLDG00000017172	msi2a	96	90.164	ENSGAFG00000006974	msi2a	96	94.545	Gambusia_affinis
ENSSLDG00000017172	msi2a	100	87.547	ENSGAGG00000016542	MSI2	100	84.868	Gopherus_agassizii
ENSSLDG00000017172	msi2a	93	92.444	ENSGGOG00000013182	MSI2	100	85.358	Gorilla_gorilla
ENSSLDG00000017172	msi2a	100	99.588	ENSHBUG00000020800	msi2a	100	99.588	Haplochromis_burtoni
ENSSLDG00000017172	msi2a	100	74.566	ENSHGLG00000012444	MSI2	100	74.566	Heterocephalus_glaber_female
ENSSLDG00000017172	msi2a	55	96.491	ENSHGLG00100004028	-	87	96.491	Heterocephalus_glaber_male
ENSSLDG00000017172	msi2a	78	84.058	ENSHGLG00100003744	MSI2	100	84.058	Heterocephalus_glaber_male
ENSSLDG00000017172	msi2a	95	82.422	ENSHCOG00000017241	-	98	71.571	Hippocampus_comes
ENSSLDG00000017172	msi2a	99	99.588	ENSHCOG00000000266	msi2a	100	98.280	Hippocampus_comes
ENSSLDG00000017172	msi2a	97	95.062	ENSIPUG00000021097	msi2a	100	95.062	Ictalurus_punctatus
ENSSLDG00000017172	msi2a	100	96.296	ENSIPUG00000003732	msi2b	100	90.415	Ictalurus_punctatus
ENSSLDG00000017172	msi2a	93	88.298	ENSSTOG00000007884	MSI2	99	88.298	Ictidomys_tridecemlineatus
ENSSLDG00000017172	msi2a	55	96.460	ENSJJAG00000009467	-	100	96.460	Jaculus_jaculus
ENSSLDG00000017172	msi2a	78	78.894	ENSJJAG00000006292	-	100	78.392	Jaculus_jaculus
ENSSLDG00000017172	msi2a	100	99.588	ENSKMAG00000009494	msi2a	97	99.602	Kryptolebias_marmoratus
ENSSLDG00000017172	msi2a	88	86.528	ENSLBEG00000026223	-	96	86.528	Labrus_bergylta
ENSSLDG00000017172	msi2a	100	100.000	ENSLBEG00000007061	msi2a	100	100.000	Labrus_bergylta
ENSSLDG00000017172	msi2a	55	92.941	ENSLACG00000016798	MSI2	98	92.308	Latimeria_chalumnae
ENSSLDG00000017172	msi2a	95	97.119	ENSLOCG00000004675	msi2b	100	88.698	Lepisosteus_oculatus
ENSSLDG00000017172	msi2a	93	92.444	ENSMFAG00000003775	MSI2	100	85.358	Macaca_fascicularis
ENSSLDG00000017172	msi2a	93	92.444	ENSMMUG00000002069	MSI2	100	85.358	Macaca_mulatta
ENSSLDG00000017172	msi2a	100	88.110	ENSMNEG00000045275	MSI2	97	93.227	Macaca_nemestrina
ENSSLDG00000017172	msi2a	93	92.444	ENSMLEG00000033888	MSI2	100	85.358	Mandrillus_leucophaeus
ENSSLDG00000017172	msi2a	100	100.000	ENSMAMG00000010503	msi2a	100	100.000	Mastacembelus_armatus
ENSSLDG00000017172	msi2a	100	90.096	ENSMAMG00000002488	-	99	94.040	Mastacembelus_armatus
ENSSLDG00000017172	msi2a	100	99.588	ENSMZEG00005007676	msi2a	100	99.588	Maylandia_zebra
ENSSLDG00000017172	msi2a	100	82.997	ENSMAUG00000003862	Msi2	100	82.997	Mesocricetus_auratus
ENSSLDG00000017172	msi2a	100	88.110	ENSMICG00000013598	-	97	93.227	Microcebus_murinus
ENSSLDG00000017172	msi2a	100	68.769	ENSMICG00000032913	-	96	79.710	Microcebus_murinus
ENSSLDG00000017172	msi2a	100	83.237	ENSMOCG00000005820	Msi2	100	83.237	Microtus_ochrogaster
ENSSLDG00000017172	msi2a	97	93.827	ENSMMOG00000008348	msi2a	90	100.000	Mola_mola
ENSSLDG00000017172	msi2a	78	83.575	ENSMODG00000014790	MSI2	100	83.575	Monodelphis_domestica
ENSSLDG00000017172	msi2a	100	99.346	ENSMALG00000000071	msi2a	100	100.000	Monopterus_albus
ENSSLDG00000017172	msi2a	100	87.805	MGP_CAROLIEiJ_G0016948	Msi2	100	96.460	Mus_caroli
ENSSLDG00000017172	msi2a	100	87.805	ENSMUSG00000069769	Msi2	100	96.460	Mus_musculus
ENSSLDG00000017172	msi2a	100	87.805	MGP_PahariEiJ_G0018079	Msi2	100	96.460	Mus_pahari
ENSSLDG00000017172	msi2a	100	87.805	MGP_SPRETEiJ_G0017795	Msi2	100	96.460	Mus_spretus
ENSSLDG00000017172	msi2a	98	89.286	ENSMPUG00000015377	MSI2	94	94.348	Mustela_putorius_furo
ENSSLDG00000017172	msi2a	98	89.286	ENSMLUG00000007865	MSI2	94	93.913	Myotis_lucifugus
ENSSLDG00000017172	msi2a	100	83.237	ENSNGAG00000017807	Msi2	100	83.237	Nannospalax_galili
ENSSLDG00000017172	msi2a	100	99.361	ENSNBRG00000014596	msi2a	100	99.361	Neolamprologus_brichardi
ENSSLDG00000017172	msi2a	93	92.444	ENSNLEG00000008059	MSI2	96	92.891	Nomascus_leucogenys
ENSSLDG00000017172	msi2a	71	83.553	ENSOPRG00000000872	-	64	83.553	Ochotona_princeps
ENSSLDG00000017172	msi2a	100	83.526	ENSODEG00000011974	MSI2	100	83.526	Octodon_degus
ENSSLDG00000017172	msi2a	62	100.000	ENSONIG00000001972	msi2a	84	100.000	Oreochromis_niloticus
ENSSLDG00000017172	msi2a	93	92.308	ENSOANG00000005667	MSI2	99	78.960	Ornithorhynchus_anatinus
ENSSLDG00000017172	msi2a	98	89.286	ENSOCUG00000010440	MSI2	94	94.348	Oryctolagus_cuniculus
ENSSLDG00000017172	msi2a	100	100.000	ENSORLG00000009671	msi2a	100	100.000	Oryzias_latipes
ENSSLDG00000017172	msi2a	100	100.000	ENSORLG00020021556	msi2a	100	100.000	Oryzias_latipes_hni
ENSSLDG00000017172	msi2a	100	100.000	ENSORLG00015004592	msi2a	100	100.000	Oryzias_latipes_hsok
ENSSLDG00000017172	msi2a	100	95.086	ENSOMEG00000000146	msi2a	100	100.000	Oryzias_melastigma
ENSSLDG00000017172	msi2a	98	85.714	ENSOGAG00000005621	MSI2	97	89.565	Otolemur_garnettii
ENSSLDG00000017172	msi2a	97	85.358	ENSPPAG00000037697	MSI2	100	85.358	Pan_paniscus
ENSSLDG00000017172	msi2a	97	90.429	ENSPPRG00000001848	MSI2	91	94.348	Panthera_pardus
ENSSLDG00000017172	msi2a	93	87.742	ENSPTIG00000021678	MSI2	96	87.742	Panthera_tigris_altaica
ENSSLDG00000017172	msi2a	78	75.314	ENSPTIG00000021873	-	91	75.314	Panthera_tigris_altaica
ENSSLDG00000017172	msi2a	93	92.444	ENSPTRG00000009437	MSI2	100	85.358	Pan_troglodytes
ENSSLDG00000017172	msi2a	100	88.110	ENSPANG00000022319	MSI2	97	93.227	Papio_anubis
ENSSLDG00000017172	msi2a	52	95.604	ENSPKIG00000017107	-	81	95.604	Paramormyrops_kingsleyae
ENSSLDG00000017172	msi2a	95	90.444	ENSPKIG00000007038	-	96	93.004	Paramormyrops_kingsleyae
ENSSLDG00000017172	msi2a	95	95.062	ENSPSIG00000008618	MSI2	100	81.176	Pelodiscus_sinensis
ENSSLDG00000017172	msi2a	100	99.361	ENSPMGG00000005888	msi2a	100	99.361	Periophthalmus_magnuspinnatus
ENSSLDG00000017172	msi2a	55	96.460	ENSPEMG00000021793	-	100	96.460	Peromyscus_maniculatus_bairdii
ENSSLDG00000017172	msi2a	100	81.921	ENSPCIG00000006063	MSI2	100	81.921	Phascolarctos_cinereus
ENSSLDG00000017172	msi2a	60	99.048	ENSPFOG00000019337	MSI2	92	99.048	Poecilia_formosa
ENSSLDG00000017172	msi2a	62	100.000	ENSPLAG00000000436	msi2a	76	96.479	Poecilia_latipinna
ENSSLDG00000017172	msi2a	56	100.000	ENSPMEG00000013247	msi2a	75	100.000	Poecilia_mexicana
ENSSLDG00000017172	msi2a	100	99.754	ENSPREG00000000881	msi2a	100	99.754	Poecilia_reticulata
ENSSLDG00000017172	msi2a	93	89.916	ENSPPYG00000008244	-	100	89.916	Pongo_abelii
ENSSLDG00000017172	msi2a	90	64.286	ENSPCAG00000010552	MSI2	95	89.231	Procavia_capensis
ENSSLDG00000017172	msi2a	55	95.420	ENSPCOG00000019195	-	93	96.154	Propithecus_coquereli
ENSSLDG00000017172	msi2a	93	85.274	ENSPVAG00000017053	MSI2	99	85.274	Pteropus_vampyrus
ENSSLDG00000017172	msi2a	100	99.509	ENSPNYG00000018393	msi2a	100	99.588	Pundamilia_nyererei
ENSSLDG00000017172	msi2a	100	94.268	ENSPNAG00000000844	msi2b	100	94.268	Pygocentrus_nattereri
ENSSLDG00000017172	msi2a	100	94.586	ENSPNAG00000014957	msi2a	100	94.586	Pygocentrus_nattereri
ENSSLDG00000017172	msi2a	93	92.806	ENSRNOG00000025338	Msi2	100	92.806	Rattus_norvegicus
ENSSLDG00000017172	msi2a	51	73.626	ENSRBIG00000032064	-	84	88.158	Rhinopithecus_bieti
ENSSLDG00000017172	msi2a	55	96.491	ENSRROG00000034421	-	92	96.491	Rhinopithecus_roxellana
ENSSLDG00000017172	msi2a	93	92.857	ENSSBOG00000026425	MSI2	100	85.358	Saimiri_boliviensis_boliviensis
ENSSLDG00000017172	msi2a	97	85.358	ENSSHAG00000008672	MSI2	100	85.358	Sarcophilus_harrisii
ENSSLDG00000017172	msi2a	97	87.459	ENSSFOG00015021687	-	97	93.243	Scleropages_formosus
ENSSLDG00000017172	msi2a	95	83.471	ENSSFOG00015012168	msi2b	100	68.998	Scleropages_formosus
ENSSLDG00000017172	msi2a	100	100.000	ENSSMAG00000018484	msi2a	100	100.000	Scophthalmus_maximus
ENSSLDG00000017172	msi2a	100	84.478	ENSSDUG00000021968	-	99	94.040	Seriola_dumerili
ENSSLDG00000017172	msi2a	100	100.000	ENSSDUG00000014507	msi2a	100	100.000	Seriola_dumerili
ENSSLDG00000017172	msi2a	62	92.405	ENSSPUG00000000913	-	94	92.405	Sphenodon_punctatus
ENSSLDG00000017172	msi2a	100	100.000	ENSSPAG00000017793	msi2a	100	100.000	Stegastes_partitus
ENSSLDG00000017172	msi2a	100	91.558	ENSSSCG00000038505	MSI2	100	93.416	Sus_scrofa
ENSSLDG00000017172	msi2a	78	84.058	ENSTGUG00000008452	MSI2	100	84.058	Taeniopygia_guttata
ENSSLDG00000017172	msi2a	97	98.477	ENSTRUG00000021248	msi2a	96	97.985	Takifugu_rubripes
ENSSLDG00000017172	msi2a	79	77.686	ENSTBEG00000001241	MSI2	73	77.686	Tupaia_belangeri
ENSSLDG00000017172	msi2a	93	84.454	ENSTTRG00000002189	MSI2	91	94.737	Tursiops_truncatus
ENSSLDG00000017172	msi2a	98	89.286	ENSUAMG00000000700	MSI2	96	94.595	Ursus_americanus
ENSSLDG00000017172	msi2a	93	91.473	ENSUMAG00000000505	MSI2	100	93.782	Ursus_maritimus
ENSSLDG00000017172	msi2a	59	81.868	ENSVPAG00000006837	-	62	81.868	Vicugna_pacos
ENSSLDG00000017172	msi2a	93	93.127	ENSVVUG00000011783	MSI2	98	92.411	Vulpes_vulpes
ENSSLDG00000017172	msi2a	96	98.413	ENSXCOG00000006113	msi2a	100	93.612	Xiphophorus_couchianus
ENSSLDG00000017172	msi2a	100	99.509	ENSXMAG00000000608	msi2a	100	99.509	Xiphophorus_maculatus