EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000017244 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 26045 bases
Position: chrPEQF01099585.1:1038663-1064707
Accession: 111648087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000022227	ResIII	PF04851.15	3.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000022949	-	3003	-	ENSSLDP00000022227	1000 (aa)	-	-
ENSSLDT00000022873	-	8489	XM_023397847	ENSSLDP00000022152	1707 (aa)	XP_023253615	-

Gene Model

Click here to download ENSSLDG00000017244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000017244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000017244	chd1	84	71.179	ENSSLDG00000001146	chd2	52	68.736
ENSSLDG00000017244	chd1	52	43.346	ENSSLDG00000012714	chd1l	54	43.984
ENSSLDG00000017244	chd1	56	42.032	ENSSLDG00000025190	smarca5	52	42.032

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000017244	chd1	84	86.019	ENSG00000153922	CHD1	51	83.713	Homo_sapiens
ENSSLDG00000017244	chd1	80	95.056	ENSAPOG00000005764	chd1	69	95.056	Acanthochromis_polyacanthus
ENSSLDG00000017244	chd1	93	90.139	ENSAOCG00000023105	chd1	57	90.236	Amphiprion_ocellaris
ENSSLDG00000017244	chd1	93	92.077	ENSAPEG00000013544	chd1	57	92.176	Amphiprion_percula
ENSSLDG00000017244	chd1	88	96.132	ENSATEG00000010676	chd1	59	89.969	Anabas_testudineus
ENSSLDG00000017244	chd1	86	89.791	ENSAMXG00000010843	chd1	66	89.791	Astyanax_mexicanus
ENSSLDG00000017244	chd1	84	86.019	ENSCATG00000032035	CHD1	52	83.713	Cercocebus_atys
ENSSLDG00000017244	chd1	84	86.019	ENSCSAG00000015339	CHD1	51	83.713	Chlorocebus_sabaeus
ENSSLDG00000017244	chd1	88	78.418	ENSCPBG00000015831	CHD1	86	78.418	Chrysemys_picta_bellii
ENSSLDG00000017244	chd1	84	81.635	ENSCANG00000036916	CHD1	51	79.954	Colobus_angolensis_palliatus
ENSSLDG00000017244	chd1	84	85.782	ENSCGRG00001023943	Chd1	51	83.941	Cricetulus_griseus_chok1gshd
ENSSLDG00000017244	chd1	84	85.782	ENSCGRG00000008652	Chd1	51	83.941	Cricetulus_griseus_crigri
ENSSLDG00000017244	chd1	93	90.987	ENSCSEG00000009553	chd1	58	90.987	Cynoglossus_semilaevis
ENSSLDG00000017244	chd1	88	83.941	ENSEASG00005016110	CHD1	62	83.941	Equus_asinus_asinus
ENSSLDG00000017244	chd1	93	82.523	ENSELUG00000017677	chd1	59	82.541	Esox_lucius
ENSSLDG00000017244	chd1	95	85.744	ENSFHEG00000021164	chd1	64	92.273	Fundulus_heteroclitus
ENSSLDG00000017244	chd1	88	88.750	ENSGMOG00000001537	chd1	50	88.523	Gadus_morhua
ENSSLDG00000017244	chd1	84	84.752	ENSGALG00000031327	-	53	83.086	Gallus_gallus
ENSSLDG00000017244	chd1	84	96.275	ENSGAFG00000019880	chd1	55	96.275	Gambusia_affinis
ENSSLDG00000017244	chd1	85	84.866	ENSGGOG00000011463	CHD1	53	82.643	Gorilla_gorilla
ENSSLDG00000017244	chd1	99	89.697	ENSHCOG00000014222	chd1	57	91.416	Hippocampus_comes
ENSSLDG00000017244	chd1	85	92.019	ENSIPUG00000001369	chd1	55	90.795	Ictalurus_punctatus
ENSSLDG00000017244	chd1	88	81.911	ENSLAFG00000023183	CHD1	81	81.911	Loxodonta_africana
ENSSLDG00000017244	chd1	84	86.019	ENSMFAG00000031226	CHD1	52	83.713	Macaca_fascicularis
ENSSLDG00000017244	chd1	88	83.713	ENSMMUG00000014090	CHD1	61	83.713	Macaca_mulatta
ENSSLDG00000017244	chd1	84	86.019	ENSMNEG00000045073	CHD1	52	83.713	Macaca_nemestrina
ENSSLDG00000017244	chd1	84	77.370	ENSMLEG00000041096	CHD1	50	77.221	Mandrillus_leucophaeus
ENSSLDG00000017244	chd1	93	92.159	ENSMZEG00005010957	chd1	68	92.159	Maylandia_zebra
ENSSLDG00000017244	chd1	58	70.137	ENSMGAG00000008369	-	75	69.558	Meleagris_gallopavo
ENSSLDG00000017244	chd1	84	85.664	ENSMOCG00000019121	Chd1	52	83.827	Microtus_ochrogaster
ENSSLDG00000017244	chd1	71	84.225	ENSMODG00000019266	-	93	84.225	Monodelphis_domestica
ENSSLDG00000017244	chd1	88	95.682	ENSMALG00000013317	chd1	64	90.360	Monopterus_albus
ENSSLDG00000017244	chd1	88	84.169	MGP_CAROLIEiJ_G0021099	Chd1	81	84.169	Mus_caroli
ENSSLDG00000017244	chd1	84	86.019	ENSMUSG00000023852	Chd1	81	84.169	Mus_musculus
ENSSLDG00000017244	chd1	88	84.055	MGP_PahariEiJ_G0023414	Chd1	81	84.055	Mus_pahari
ENSSLDG00000017244	chd1	93	92.167	ENSNBRG00000006860	chd1	58	92.167	Neolamprologus_brichardi
ENSSLDG00000017244	chd1	84	86.019	ENSNLEG00000014493	CHD1	51	83.713	Nomascus_leucogenys
ENSSLDG00000017244	chd1	88	84.282	ENSOANG00000004891	CHD1	51	84.282	Ornithorhynchus_anatinus
ENSSLDG00000017244	chd1	88	90.216	ENSORLG00015016725	chd1	82	90.216	Oryzias_latipes_hsok
ENSSLDG00000017244	chd1	84	84.136	ENSPPAG00000043367	CHD1	52	81.808	Pan_paniscus
ENSSLDG00000017244	chd1	84	86.019	ENSPTRG00000017103	CHD1	52	83.713	Pan_troglodytes
ENSSLDG00000017244	chd1	84	86.019	ENSPANG00000006387	CHD1	52	83.713	Papio_anubis
ENSSLDG00000017244	chd1	88	79.682	ENSPKIG00000024719	chd1	52	78.068	Paramormyrops_kingsleyae
ENSSLDG00000017244	chd1	94	87.911	ENSPMGG00000005785	chd1	68	87.911	Periophthalmus_magnuspinnatus
ENSSLDG00000017244	chd1	84	85.782	ENSPEMG00000015939	Chd1	51	83.941	Peromyscus_maniculatus_bairdii
ENSSLDG00000017244	chd1	71	90.336	ENSPLAG00000006473	-	73	90.336	Poecilia_latipinna
ENSSLDG00000017244	chd1	88	91.705	ENSPREG00000004209	chd1	53	91.011	Poecilia_reticulata
ENSSLDG00000017244	chd1	84	85.782	ENSRNOG00000014434	Chd1	61	83.827	Rattus_norvegicus
ENSSLDG00000017244	chd1	84	86.019	ENSRBIG00000044325	CHD1	53	83.941	Rhinopithecus_bieti
ENSSLDG00000017244	chd1	84	86.019	ENSRROG00000001726	CHD1	52	83.941	Rhinopithecus_roxellana
ENSSLDG00000017244	chd1	93	83.636	ENSSFOG00015007161	chd1	68	83.103	Scleropages_formosus
ENSSLDG00000017244	chd1	88	99.886	ENSSDUG00000018314	chd1	71	99.886	Seriola_dumerili
ENSSLDG00000017244	chd1	88	96.591	ENSSPAG00000007024	chd1	63	95.941	Stegastes_partitus
ENSSLDG00000017244	chd1	88	84.055	ENSSSCG00000014177	CHD1	60	84.055	Sus_scrofa
ENSSLDG00000017244	chd1	88	92.159	ENSTRUG00000010282	chd1	52	91.932	Takifugu_rubripes
ENSSLDG00000017244	chd1	88	91.468	ENSTNIG00000007101	chd1	68	91.581	Tetraodon_nigroviridis
ENSSLDG00000017244	chd1	96	85.404	ENSXCOG00000017184	chd1	54	91.818	Xiphophorus_couchianus
ENSSLDG00000017244	chd1	88	91.818	ENSXMAG00000014538	chd1	65	91.124	Xiphophorus_maculatus