EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000017325 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 2805 bases
Position: chrPEQF01095679.1:144370-147174
Accession: 111649554
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000022203	SMN	PF06003.12	4.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000022925	-	717	XM_023399308	ENSSLDP00000022203	238 (aa)	XP_023255076	UPI000C6F5C39

Gene Model

Click here to download ENSSLDG00000017325's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000017325's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000017325	smndc1	100	76.891	ENSG00000119953	SMNDC1	100	76.891	Homo_sapiens
ENSSLDG00000017325	smndc1	100	93.697	ENSAPOG00000021772	smndc1	100	93.697	Acanthochromis_polyacanthus
ENSSLDG00000017325	smndc1	100	76.471	ENSAMEG00000005251	SMNDC1	100	76.471	Ailuropoda_melanoleuca
ENSSLDG00000017325	smndc1	100	92.437	ENSACIG00000004819	smndc1	100	92.437	Amphilophus_citrinellus
ENSSLDG00000017325	smndc1	100	92.437	ENSAOCG00000017869	smndc1	100	92.437	Amphiprion_ocellaris
ENSSLDG00000017325	smndc1	100	92.437	ENSAPEG00000007752	smndc1	100	92.437	Amphiprion_percula
ENSSLDG00000017325	smndc1	100	93.697	ENSATEG00000006830	smndc1	100	93.697	Anabas_testudineus
ENSSLDG00000017325	smndc1	83	77.778	ENSAPLG00000004322	SMNDC1	100	77.778	Anas_platyrhynchos
ENSSLDG00000017325	smndc1	100	78.151	ENSACAG00000005983	SMNDC1	100	78.151	Anolis_carolinensis
ENSSLDG00000017325	smndc1	100	76.471	ENSANAG00000032875	SMNDC1	100	76.471	Aotus_nancymaae
ENSSLDG00000017325	smndc1	100	90.756	ENSACLG00000016360	smndc1	100	90.756	Astatotilapia_calliptera
ENSSLDG00000017325	smndc1	100	82.773	ENSAMXG00000020310	smndc1	100	82.773	Astyanax_mexicanus
ENSSLDG00000017325	smndc1	100	78.243	ENSBTAG00000000551	SMNDC1	100	78.243	Bos_taurus
ENSSLDG00000017325	smndc1	100	76.471	ENSCJAG00000018624	SMNDC1	100	76.471	Callithrix_jacchus
ENSSLDG00000017325	smndc1	100	76.471	ENSCAFG00000010720	SMNDC1	100	76.471	Canis_familiaris
ENSSLDG00000017325	smndc1	100	76.471	ENSCAFG00020011913	SMNDC1	100	76.471	Canis_lupus_dingo
ENSSLDG00000017325	smndc1	100	78.243	ENSCHIG00000010604	SMNDC1	100	78.243	Capra_hircus
ENSSLDG00000017325	smndc1	100	76.471	ENSTSYG00000026454	SMNDC1	100	76.471	Carlito_syrichta
ENSSLDG00000017325	smndc1	100	62.917	ENSCAPG00000009132	SMNDC1	100	73.134	Cavia_aperea
ENSSLDG00000017325	smndc1	100	76.471	ENSCPOG00000031666	SMNDC1	100	76.471	Cavia_porcellus
ENSSLDG00000017325	smndc1	100	76.471	ENSCCAG00000021793	SMNDC1	100	76.471	Cebus_capucinus
ENSSLDG00000017325	smndc1	100	76.050	ENSCATG00000035910	SMNDC1	100	76.050	Cercocebus_atys
ENSSLDG00000017325	smndc1	100	76.471	ENSCLAG00000002838	SMNDC1	100	76.471	Chinchilla_lanigera
ENSSLDG00000017325	smndc1	100	76.471	ENSCSAG00000005169	SMNDC1	100	76.471	Chlorocebus_sabaeus
ENSSLDG00000017325	smndc1	81	72.539	ENSCHOG00000002936	SMNDC1	100	72.539	Choloepus_hoffmanni
ENSSLDG00000017325	smndc1	100	76.891	ENSCPBG00000012837	SMNDC1	100	76.891	Chrysemys_picta_bellii
ENSSLDG00000017325	smndc1	100	70.168	ENSCANG00000034620	-	100	70.168	Colobus_angolensis_palliatus
ENSSLDG00000017325	smndc1	100	61.088	ENSCANG00000036994	-	100	61.088	Colobus_angolensis_palliatus
ENSSLDG00000017325	smndc1	100	76.471	ENSCANG00000031720	-	100	76.471	Colobus_angolensis_palliatus
ENSSLDG00000017325	smndc1	100	76.050	ENSCGRG00001012973	Smndc1	100	76.050	Cricetulus_griseus_chok1gshd
ENSSLDG00000017325	smndc1	100	76.050	ENSCGRG00000012396	Smndc1	100	76.050	Cricetulus_griseus_crigri
ENSSLDG00000017325	smndc1	100	86.975	ENSCSEG00000015621	smndc1	100	86.975	Cynoglossus_semilaevis
ENSSLDG00000017325	smndc1	100	88.655	ENSCVAG00000020432	smndc1	100	88.655	Cyprinodon_variegatus
ENSSLDG00000017325	smndc1	100	84.100	ENSDARG00000056235	smndc1	100	84.100	Danio_rerio
ENSSLDG00000017325	smndc1	100	76.471	ENSDNOG00000016387	SMNDC1	83	76.471	Dasypus_novemcinctus
ENSSLDG00000017325	smndc1	100	76.471	ENSDORG00000023715	Smndc1	100	76.471	Dipodomys_ordii
ENSSLDG00000017325	smndc1	97	41.502	FBgn0039977	CG17454	98	43.083	Drosophila_melanogaster
ENSSLDG00000017325	smndc1	100	68.465	ENSEBUG00000010929	smndc1	100	69.710	Eptatretus_burgeri
ENSSLDG00000017325	smndc1	100	76.471	ENSEASG00005014930	SMNDC1	100	76.471	Equus_asinus_asinus
ENSSLDG00000017325	smndc1	100	76.471	ENSECAG00000029973	SMNDC1	100	76.471	Equus_caballus
ENSSLDG00000017325	smndc1	83	54.545	ENSEEUG00000013407	-	100	54.545	Erinaceus_europaeus
ENSSLDG00000017325	smndc1	100	86.555	ENSELUG00000000227	smndc1	100	86.555	Esox_lucius
ENSSLDG00000017325	smndc1	100	76.471	ENSFCAG00000027353	SMNDC1	100	76.471	Felis_catus
ENSSLDG00000017325	smndc1	100	78.151	ENSFALG00000002306	SMNDC1	100	78.151	Ficedula_albicollis
ENSSLDG00000017325	smndc1	100	76.891	ENSFDAG00000006468	SMNDC1	100	76.891	Fukomys_damarensis
ENSSLDG00000017325	smndc1	100	91.176	ENSFHEG00000020150	smndc1	100	91.176	Fundulus_heteroclitus
ENSSLDG00000017325	smndc1	100	85.714	ENSGMOG00000016585	smndc1	100	85.714	Gadus_morhua
ENSSLDG00000017325	smndc1	100	78.151	ENSGALG00000008561	SMNDC1	100	78.151	Gallus_gallus
ENSSLDG00000017325	smndc1	100	88.655	ENSGAFG00000011582	smndc1	100	88.655	Gambusia_affinis
ENSSLDG00000017325	smndc1	100	91.176	ENSGACG00000009468	smndc1	100	91.176	Gasterosteus_aculeatus
ENSSLDG00000017325	smndc1	100	76.891	ENSGAGG00000024547	SMNDC1	100	76.891	Gopherus_agassizii
ENSSLDG00000017325	smndc1	100	76.471	ENSGGOG00000010071	SMNDC1	100	76.471	Gorilla_gorilla
ENSSLDG00000017325	smndc1	100	90.756	ENSHBUG00000017596	smndc1	100	90.756	Haplochromis_burtoni
ENSSLDG00000017325	smndc1	100	76.891	ENSHGLG00000013390	-	100	76.891	Heterocephalus_glaber_female
ENSSLDG00000017325	smndc1	100	56.327	ENSHGLG00000001157	-	100	55.918	Heterocephalus_glaber_female
ENSSLDG00000017325	smndc1	100	76.891	ENSHGLG00100004814	-	100	76.891	Heterocephalus_glaber_male
ENSSLDG00000017325	smndc1	100	61.633	ENSHGLG00100004278	-	100	59.919	Heterocephalus_glaber_male
ENSSLDG00000017325	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSSLDG00000017325	smndc1	100	86.134	ENSIPUG00000004217	smndc1	100	86.134	Ictalurus_punctatus
ENSSLDG00000017325	smndc1	100	76.471	ENSSTOG00000006088	SMNDC1	100	76.471	Ictidomys_tridecemlineatus
ENSSLDG00000017325	smndc1	100	76.471	ENSJJAG00000019974	Smndc1	100	76.471	Jaculus_jaculus
ENSSLDG00000017325	smndc1	100	89.076	ENSKMAG00000020134	smndc1	100	89.076	Kryptolebias_marmoratus
ENSSLDG00000017325	smndc1	100	91.176	ENSLBEG00000004598	smndc1	100	91.176	Labrus_bergylta
ENSSLDG00000017325	smndc1	100	77.731	ENSLACG00000007784	SMNDC1	100	77.731	Latimeria_chalumnae
ENSSLDG00000017325	smndc1	100	82.773	ENSLOCG00000012355	smndc1	100	82.773	Lepisosteus_oculatus
ENSSLDG00000017325	smndc1	100	76.050	ENSLAFG00000014353	SMNDC1	100	76.050	Loxodonta_africana
ENSSLDG00000017325	smndc1	100	64.706	ENSMFAG00000038381	-	100	64.706	Macaca_fascicularis
ENSSLDG00000017325	smndc1	100	76.471	ENSMFAG00000002433	-	100	76.471	Macaca_fascicularis
ENSSLDG00000017325	smndc1	100	76.471	ENSMMUG00000007775	SMNDC1	100	76.471	Macaca_mulatta
ENSSLDG00000017325	smndc1	100	64.706	ENSMMUG00000045875	-	100	64.706	Macaca_mulatta
ENSSLDG00000017325	smndc1	100	67.227	ENSMNEG00000033853	-	100	67.227	Macaca_nemestrina
ENSSLDG00000017325	smndc1	100	76.471	ENSMNEG00000042963	-	100	76.471	Macaca_nemestrina
ENSSLDG00000017325	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSSLDG00000017325	smndc1	89	91.549	ENSMAMG00000018233	smndc1	87	91.549	Mastacembelus_armatus
ENSSLDG00000017325	smndc1	100	90.756	ENSMZEG00005027510	smndc1	100	90.756	Maylandia_zebra
ENSSLDG00000017325	smndc1	99	69.328	ENSMGAG00000010777	SMNDC1	100	69.328	Meleagris_gallopavo
ENSSLDG00000017325	smndc1	99	63.713	ENSMAUG00000005459	-	93	63.713	Mesocricetus_auratus
ENSSLDG00000017325	smndc1	100	76.471	ENSMAUG00000012243	-	100	76.471	Mesocricetus_auratus
ENSSLDG00000017325	smndc1	100	65.966	ENSMICG00000031640	-	100	65.966	Microcebus_murinus
ENSSLDG00000017325	smndc1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSSLDG00000017325	smndc1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSSLDG00000017325	smndc1	100	91.176	ENSMMOG00000008856	smndc1	100	91.176	Mola_mola
ENSSLDG00000017325	smndc1	100	76.891	ENSMODG00000010542	SMNDC1	100	76.891	Monodelphis_domestica
ENSSLDG00000017325	smndc1	100	93.277	ENSMALG00000017598	smndc1	100	93.277	Monopterus_albus
ENSSLDG00000017325	smndc1	100	76.471	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.471	Mus_caroli
ENSSLDG00000017325	smndc1	100	76.471	ENSMUSG00000025024	Smndc1	100	76.471	Mus_musculus
ENSSLDG00000017325	smndc1	100	76.471	MGP_PahariEiJ_G0014560	Smndc1	100	76.471	Mus_pahari
ENSSLDG00000017325	smndc1	100	76.471	MGP_SPRETEiJ_G0023993	Smndc1	100	76.471	Mus_spretus
ENSSLDG00000017325	smndc1	100	76.471	ENSMPUG00000002089	SMNDC1	100	76.471	Mustela_putorius_furo
ENSSLDG00000017325	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSSLDG00000017325	smndc1	100	76.891	ENSNGAG00000006833	Smndc1	100	76.891	Nannospalax_galili
ENSSLDG00000017325	smndc1	100	90.756	ENSNBRG00000017089	smndc1	100	90.756	Neolamprologus_brichardi
ENSSLDG00000017325	smndc1	100	76.471	ENSNLEG00000015471	SMNDC1	100	76.471	Nomascus_leucogenys
ENSSLDG00000017325	smndc1	82	55.500	ENSMEUG00000010120	-	100	55.224	Notamacropus_eugenii
ENSSLDG00000017325	smndc1	100	76.471	ENSOPRG00000015348	SMNDC1	100	76.471	Ochotona_princeps
ENSSLDG00000017325	smndc1	100	55.042	ENSODEG00000007594	-	100	52.941	Octodon_degus
ENSSLDG00000017325	smndc1	100	90.756	ENSONIG00000000434	smndc1	100	90.756	Oreochromis_niloticus
ENSSLDG00000017325	smndc1	100	77.311	ENSOANG00000001598	SMNDC1	100	77.311	Ornithorhynchus_anatinus
ENSSLDG00000017325	smndc1	100	57.143	ENSOCUG00000012274	-	100	59.664	Oryctolagus_cuniculus
ENSSLDG00000017325	smndc1	100	76.471	ENSOCUG00000008145	-	100	76.471	Oryctolagus_cuniculus
ENSSLDG00000017325	smndc1	100	84.454	ENSORLG00000005934	smndc1	95	84.454	Oryzias_latipes
ENSSLDG00000017325	smndc1	100	84.454	ENSORLG00020008796	smndc1	95	84.454	Oryzias_latipes_hni
ENSSLDG00000017325	smndc1	100	84.034	ENSORLG00015013666	smndc1	100	84.034	Oryzias_latipes_hsok
ENSSLDG00000017325	smndc1	100	81.933	ENSOMEG00000007590	smndc1	100	81.933	Oryzias_melastigma
ENSSLDG00000017325	smndc1	100	78.243	ENSOGAG00000000571	SMNDC1	100	78.243	Otolemur_garnettii
ENSSLDG00000017325	smndc1	100	78.243	ENSOARG00000009500	SMNDC1	100	78.243	Ovis_aries
ENSSLDG00000017325	smndc1	100	76.471	ENSPPAG00000027815	SMNDC1	100	76.471	Pan_paniscus
ENSSLDG00000017325	smndc1	100	76.471	ENSPPRG00000013749	SMNDC1	100	76.471	Panthera_pardus
ENSSLDG00000017325	smndc1	100	76.471	ENSPTIG00000011451	SMNDC1	100	76.471	Panthera_tigris_altaica
ENSSLDG00000017325	smndc1	100	76.471	ENSPTRG00000002937	SMNDC1	100	76.471	Pan_troglodytes
ENSSLDG00000017325	smndc1	100	76.471	ENSPANG00000020805	-	100	76.471	Papio_anubis
ENSSLDG00000017325	smndc1	100	72.269	ENSPANG00000031346	-	100	72.269	Papio_anubis
ENSSLDG00000017325	smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSSLDG00000017325	smndc1	100	77.311	ENSPSIG00000012257	SMNDC1	100	77.311	Pelodiscus_sinensis
ENSSLDG00000017325	smndc1	100	82.773	ENSPMGG00000015651	smndc1	100	82.773	Periophthalmus_magnuspinnatus
ENSSLDG00000017325	smndc1	100	76.471	ENSPEMG00000022058	Smndc1	100	76.471	Peromyscus_maniculatus_bairdii
ENSSLDG00000017325	smndc1	100	64.754	ENSPMAG00000007705	smndc1	100	64.754	Petromyzon_marinus
ENSSLDG00000017325	smndc1	100	76.891	ENSPCIG00000018419	SMNDC1	100	76.891	Phascolarctos_cinereus
ENSSLDG00000017325	smndc1	95	58.850	ENSPCIG00000009693	-	98	58.850	Phascolarctos_cinereus
ENSSLDG00000017325	smndc1	100	89.916	ENSPFOG00000017113	smndc1	100	89.916	Poecilia_formosa
ENSSLDG00000017325	smndc1	100	89.076	ENSPLAG00000010372	smndc1	100	89.076	Poecilia_latipinna
ENSSLDG00000017325	smndc1	100	89.496	ENSPMEG00000012288	smndc1	100	89.496	Poecilia_mexicana
ENSSLDG00000017325	smndc1	100	87.815	ENSPREG00000012279	smndc1	100	87.815	Poecilia_reticulata
ENSSLDG00000017325	smndc1	100	76.471	ENSPPYG00000002643	SMNDC1	100	76.471	Pongo_abelii
ENSSLDG00000017325	smndc1	81	72.539	ENSPCAG00000016183	SMNDC1	100	72.539	Procavia_capensis
ENSSLDG00000017325	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSSLDG00000017325	smndc1	100	60.084	ENSPVAG00000004368	SMNDC1	100	60.084	Pteropus_vampyrus
ENSSLDG00000017325	smndc1	83	89.899	ENSPNYG00000024093	smndc1	86	89.899	Pundamilia_nyererei
ENSSLDG00000017325	smndc1	100	82.773	ENSPNAG00000025285	smndc1	100	82.773	Pygocentrus_nattereri
ENSSLDG00000017325	smndc1	100	76.471	ENSRNOG00000014833	Smndc1	100	76.471	Rattus_norvegicus
ENSSLDG00000017325	smndc1	100	62.605	ENSRBIG00000032452	-	100	62.605	Rhinopithecus_bieti
ENSSLDG00000017325	smndc1	100	76.050	ENSRBIG00000000224	-	100	76.050	Rhinopithecus_bieti
ENSSLDG00000017325	smndc1	100	76.471	ENSRROG00000044992	-	100	76.471	Rhinopithecus_roxellana
ENSSLDG00000017325	smndc1	100	63.025	ENSRROG00000039125	-	100	63.025	Rhinopithecus_roxellana
ENSSLDG00000017325	smndc1	100	76.471	ENSSBOG00000026789	SMNDC1	100	76.471	Saimiri_boliviensis_boliviensis
ENSSLDG00000017325	smndc1	100	76.891	ENSSHAG00000015189	SMNDC1	100	76.891	Sarcophilus_harrisii
ENSSLDG00000017325	smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSSLDG00000017325	smndc1	100	93.277	ENSSMAG00000020118	smndc1	100	93.277	Scophthalmus_maximus
ENSSLDG00000017325	smndc1	100	99.580	ENSSDUG00000015330	smndc1	100	99.580	Seriola_dumerili
ENSSLDG00000017325	smndc1	100	76.471	ENSSARG00000006063	SMNDC1	100	76.471	Sorex_araneus
ENSSLDG00000017325	smndc1	100	77.731	ENSSPUG00000004574	SMNDC1	100	77.731	Sphenodon_punctatus
ENSSLDG00000017325	smndc1	100	93.277	ENSSPAG00000000338	smndc1	100	93.277	Stegastes_partitus
ENSSLDG00000017325	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSSLDG00000017325	smndc1	100	78.151	ENSTGUG00000010599	SMNDC1	100	78.151	Taeniopygia_guttata
ENSSLDG00000017325	smndc1	100	85.294	ENSTRUG00000023281	smndc1	100	85.294	Takifugu_rubripes
ENSSLDG00000017325	smndc1	100	84.874	ENSTNIG00000013331	smndc1	100	84.874	Tetraodon_nigroviridis
ENSSLDG00000017325	smndc1	100	76.471	ENSTBEG00000014337	SMNDC1	100	76.471	Tupaia_belangeri
ENSSLDG00000017325	smndc1	100	76.471	ENSUAMG00000008142	SMNDC1	100	76.471	Ursus_americanus
ENSSLDG00000017325	smndc1	100	76.471	ENSUMAG00000023722	SMNDC1	100	76.471	Ursus_maritimus
ENSSLDG00000017325	smndc1	83	76.263	ENSVPAG00000003402	SMNDC1	100	76.263	Vicugna_pacos
ENSSLDG00000017325	smndc1	100	76.471	ENSVVUG00000007820	SMNDC1	100	76.471	Vulpes_vulpes
ENSSLDG00000017325	smndc1	60	63.380	ENSXETG00000015415	SMNDC1	100	63.380	Xenopus_tropicalis
ENSSLDG00000017325	smndc1	100	89.496	ENSXCOG00000009159	smndc1	100	89.496	Xiphophorus_couchianus
ENSSLDG00000017325	smndc1	100	89.496	ENSXMAG00000012755	smndc1	100	89.496	Xiphophorus_maculatus