EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000020161 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: zgc:109966
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 28975 bases
Position: chrPEQF01099168.1:1380528-1409502
Accession: 111667453
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000025934	KH_1	PF00013.29	1e-54	1	3
ENSSLDP00000025934	KH_1	PF00013.29	1e-54	2	3
ENSSLDP00000025934	KH_1	PF00013.29	1e-54	3	3
ENSSLDP00000025934	KH_2	PF07650.17	2.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000026731	-	5870	XM_023423158	ENSSLDP00000025934	327 (aa)	XP_023278926	UPI000873D0B0

Gene Model

Click here to download ENSSLDG00000020161's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000020161's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000020161	-	73	39.706	ENSSLDG00000006713	nova1	53	39.706
ENSSLDG00000020161	-	65	38.235	ENSSLDG00000025625	KHSRP	57	38.235
ENSSLDG00000020161	-	95	87.761	ENSSLDG00000008518	pcbp3	99	87.761
ENSSLDG00000020161	-	67	36.000	ENSSLDG00000022863	fubp1	52	36.000
ENSSLDG00000020161	-	94	79.805	ENSSLDG00000002018	PCBP2	96	79.805
ENSSLDG00000020161	-	91	33.750	ENSSLDG00000007046	igf2bp2b	64	33.750
ENSSLDG00000020161	-	79	46.914	ENSSLDG00000005683	hnrpkl	59	46.914
ENSSLDG00000020161	-	94	77.636	ENSSLDG00000008839	pcbp2	96	77.636
ENSSLDG00000020161	-	76	52.857	ENSSLDG00000002069	hnrnpk	56	52.857
ENSSLDG00000020161	-	94	34.507	ENSSLDG00000025576	igf2bp3	63	34.507
ENSSLDG00000020161	-	92	57.975	ENSSLDG00000007851	-	71	57.975
ENSSLDG00000020161	-	76	70.000	ENSSLDG00000024847	-	71	68.712
ENSSLDG00000020161	-	98	72.699	ENSSLDG00000021064	zgc:110045	75	72.699
ENSSLDG00000020161	-	87	37.500	ENSSLDG00000009455	FUBP3	75	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000020161	-	95	95.161	ENSAPOG00000020003	pcbp3	86	95.161	Acanthochromis_polyacanthus
ENSSLDG00000020161	-	100	100.000	ENSAPOG00000016582	-	100	100.000	Acanthochromis_polyacanthus
ENSSLDG00000020161	-	93	91.641	ENSAMEG00000001697	-	96	87.278	Ailuropoda_melanoleuca
ENSSLDG00000020161	-	100	88.571	ENSACIG00000010933	pcbp3	100	88.571	Amphilophus_citrinellus
ENSSLDG00000020161	-	95	94.654	ENSACIG00000002739	-	97	94.654	Amphilophus_citrinellus
ENSSLDG00000020161	-	91	95.053	ENSAOCG00000007806	-	97	95.053	Amphiprion_ocellaris
ENSSLDG00000020161	-	97	95.899	ENSAOCG00000008592	-	100	95.899	Amphiprion_ocellaris
ENSSLDG00000020161	-	95	97.428	ENSAPEG00000005209	-	97	97.428	Amphiprion_percula
ENSSLDG00000020161	-	100	90.909	ENSAPEG00000008011	pcbp3	100	90.909	Amphiprion_percula
ENSSLDG00000020161	-	95	88.589	ENSATEG00000015787	-	100	88.589	Anabas_testudineus
ENSSLDG00000020161	-	95	97.106	ENSATEG00000009833	-	97	97.106	Anabas_testudineus
ENSSLDG00000020161	-	93	93.082	ENSAPLG00000002975	-	95	93.082	Anas_platyrhynchos
ENSSLDG00000020161	-	98	75.477	ENSAPLG00000008951	-	82	75.477	Anas_platyrhynchos
ENSSLDG00000020161	-	94	83.988	ENSACAG00000009819	-	96	83.988	Anolis_carolinensis
ENSSLDG00000020161	-	93	85.591	ENSACAG00000004607	-	96	85.591	Anolis_carolinensis
ENSSLDG00000020161	-	91	96.930	ENSANAG00000030702	-	96	96.930	Aotus_nancymaae
ENSSLDG00000020161	-	100	90.057	ENSACLG00000011835	pcbp3	100	90.057	Astatotilapia_calliptera
ENSSLDG00000020161	-	100	99.388	ENSACLG00000003801	-	100	99.388	Astatotilapia_calliptera
ENSSLDG00000020161	-	100	92.571	ENSAMXG00000003440	pcbp3	100	92.571	Astyanax_mexicanus
ENSSLDG00000020161	-	93	67.674	ENSAMXG00000001760	zgc:110045	73	67.674	Astyanax_mexicanus
ENSSLDG00000020161	-	95	92.903	ENSAMXG00000013588	-	100	92.903	Astyanax_mexicanus
ENSSLDG00000020161	-	89	97.380	ENSCAFG00020019472	-	81	97.380	Canis_lupus_dingo
ENSSLDG00000020161	-	93	97.368	ENSCSAG00000007440	-	87	97.368	Chlorocebus_sabaeus
ENSSLDG00000020161	-	99	80.925	ENSCPBG00000000733	-	76	80.925	Chrysemys_picta_bellii
ENSSLDG00000020161	-	98	93.438	ENSCPBG00000012151	-	95	93.438	Chrysemys_picta_bellii
ENSSLDG00000020161	-	95	78.635	ENSCSEG00000016984	-	94	82.553	Cynoglossus_semilaevis
ENSSLDG00000020161	-	95	93.548	ENSCSEG00000000822	pcbp3	99	93.548	Cynoglossus_semilaevis
ENSSLDG00000020161	-	100	90.625	ENSCVAG00000014482	pcbp3	100	90.625	Cyprinodon_variegatus
ENSSLDG00000020161	-	100	99.083	ENSCVAG00000005262	-	100	99.083	Cyprinodon_variegatus
ENSSLDG00000020161	-	100	92.857	ENSDARG00000054378	pcbp3	100	92.857	Danio_rerio
ENSSLDG00000020161	-	93	83.224	ENSETEG00000015988	-	95	83.224	Echinops_telfairi
ENSSLDG00000020161	-	90	70.445	ENSEBUG00000005495	pcbp3	74	70.445	Eptatretus_burgeri
ENSSLDG00000020161	-	91	73.704	ENSEBUG00000016192	pcbp3	99	73.978	Eptatretus_burgeri
ENSSLDG00000020161	-	94	80.573	ENSEBUG00000007485	-	92	82.192	Eptatretus_burgeri
ENSSLDG00000020161	-	100	90.935	ENSELUG00000003521	pcbp3	100	90.935	Esox_lucius
ENSSLDG00000020161	-	100	98.777	ENSELUG00000001560	-	91	98.777	Esox_lucius
ENSSLDG00000020161	-	98	75.749	ENSFALG00000004411	-	77	75.749	Ficedula_albicollis
ENSSLDG00000020161	-	93	97.039	ENSFALG00000003949	-	95	97.039	Ficedula_albicollis
ENSSLDG00000020161	-	97	93.060	ENSFHEG00000016615	pcbp3	97	93.060	Fundulus_heteroclitus
ENSSLDG00000020161	-	95	96.463	ENSFHEG00000006539	-	97	96.463	Fundulus_heteroclitus
ENSSLDG00000020161	-	94	81.682	ENSGMOG00000011992	pcbp3	96	81.682	Gadus_morhua
ENSSLDG00000020161	-	94	70.997	ENSGMOG00000008611	-	100	70.997	Gadus_morhua
ENSSLDG00000020161	-	93	82.997	ENSGALG00000004394	-	98	89.674	Gallus_gallus
ENSSLDG00000020161	-	92	84.308	ENSGALG00000013155	-	98	81.346	Gallus_gallus
ENSSLDG00000020161	-	95	86.787	ENSGAFG00000011430	pcbp3	96	86.787	Gambusia_affinis
ENSSLDG00000020161	-	100	99.388	ENSGAFG00000010274	-	100	99.388	Gambusia_affinis
ENSSLDG00000020161	-	95	92.447	ENSGACG00000002266	-	97	92.447	Gasterosteus_aculeatus
ENSSLDG00000020161	-	95	81.586	ENSGACG00000014955	-	97	81.586	Gasterosteus_aculeatus
ENSSLDG00000020161	-	76	87.368	ENSGAGG00000006956	-	76	87.368	Gopherus_agassizii
ENSSLDG00000020161	-	89	89.513	ENSGAGG00000000271	-	100	89.513	Gopherus_agassizii
ENSSLDG00000020161	-	100	99.388	ENSHBUG00000021782	-	100	99.388	Haplochromis_burtoni
ENSSLDG00000020161	-	100	90.057	ENSHBUG00000010697	pcbp3	98	94.516	Haplochromis_burtoni
ENSSLDG00000020161	-	95	93.569	ENSHCOG00000006067	-	97	93.569	Hippocampus_comes
ENSSLDG00000020161	-	100	90.883	ENSHCOG00000017868	pcbp3	100	90.883	Hippocampus_comes
ENSSLDG00000020161	-	95	95.498	ENSIPUG00000006238	pcbp3	97	95.498	Ictalurus_punctatus
ENSSLDG00000020161	-	100	98.471	ENSKMAG00000018530	-	100	98.471	Kryptolebias_marmoratus
ENSSLDG00000020161	-	100	90.909	ENSKMAG00000003046	pcbp3	100	90.909	Kryptolebias_marmoratus
ENSSLDG00000020161	-	96	93.930	ENSLBEG00000006201	pcbp3	96	93.930	Labrus_bergylta
ENSSLDG00000020161	-	100	83.434	ENSLBEG00000006542	-	100	83.434	Labrus_bergylta
ENSSLDG00000020161	-	97	81.267	ENSLACG00000010386	pcbp3	77	81.267	Latimeria_chalumnae
ENSSLDG00000020161	-	99	75.543	ENSLACG00000010804	zgc:110045	77	75.543	Latimeria_chalumnae
ENSSLDG00000020161	-	93	91.667	ENSLOCG00000009369	pcbp3	96	91.667	Lepisosteus_oculatus
ENSSLDG00000020161	-	93	83.486	ENSLOCG00000005058	zgc:110045	80	83.486	Lepisosteus_oculatus
ENSSLDG00000020161	-	95	94.839	ENSMAMG00000022336	pcbp3	93	94.839	Mastacembelus_armatus
ENSSLDG00000020161	-	95	95.820	ENSMAMG00000011620	-	97	95.820	Mastacembelus_armatus
ENSSLDG00000020161	-	100	89.645	ENSMZEG00005014882	-	100	90.237	Maylandia_zebra
ENSSLDG00000020161	-	100	88.286	ENSMZEG00005008993	pcbp3	100	88.286	Maylandia_zebra
ENSSLDG00000020161	-	98	75.749	ENSMGAG00000006794	-	77	75.749	Meleagris_gallopavo
ENSSLDG00000020161	-	93	81.268	ENSMGAG00000001883	-	96	81.556	Meleagris_gallopavo
ENSSLDG00000020161	-	95	96.463	ENSMMOG00000005216	-	97	96.463	Mola_mola
ENSSLDG00000020161	-	95	93.910	ENSMMOG00000000730	pcbp3	88	93.910	Mola_mola
ENSSLDG00000020161	-	69	78.037	ENSMODG00000027884	-	93	78.037	Monodelphis_domestica
ENSSLDG00000020161	-	100	88.604	ENSMALG00000000691	pcbp3	100	88.604	Monopterus_albus
ENSSLDG00000020161	-	93	84.568	ENSMPUG00000001779	-	88	84.568	Mustela_putorius_furo
ENSSLDG00000020161	-	100	90.237	ENSNBRG00000016714	-	100	90.237	Neolamprologus_brichardi
ENSSLDG00000020161	-	100	88.286	ENSNBRG00000016409	-	100	88.286	Neolamprologus_brichardi
ENSSLDG00000020161	-	94	82.521	ENSOPRG00000003431	-	99	82.521	Ochotona_princeps
ENSSLDG00000020161	-	95	85.269	ENSONIG00000012122	-	98	85.269	Oreochromis_niloticus
ENSSLDG00000020161	-	95	99.035	ENSONIG00000004611	-	97	99.035	Oreochromis_niloticus
ENSSLDG00000020161	-	93	96.711	ENSOCUG00000002696	-	87	96.711	Oryctolagus_cuniculus
ENSSLDG00000020161	-	99	98.773	ENSORLG00000022739	-	99	98.773	Oryzias_latipes
ENSSLDG00000020161	-	95	97.742	ENSORLG00000000059	pcbp3	100	97.742	Oryzias_latipes
ENSSLDG00000020161	-	95	97.742	ENSORLG00020012671	pcbp3	97	97.742	Oryzias_latipes_hni
ENSSLDG00000020161	-	99	98.466	ENSORLG00020006124	-	99	98.466	Oryzias_latipes_hni
ENSSLDG00000020161	-	99	98.773	ENSORLG00015008051	-	99	98.773	Oryzias_latipes_hsok
ENSSLDG00000020161	-	95	97.742	ENSORLG00015000429	pcbp3	97	97.742	Oryzias_latipes_hsok
ENSSLDG00000020161	-	90	96.441	ENSOMEG00000020811	pcbp3	97	96.441	Oryzias_melastigma
ENSSLDG00000020161	-	95	98.714	ENSOMEG00000020162	-	97	98.714	Oryzias_melastigma
ENSSLDG00000020161	-	93	83.714	ENSOGAG00000008044	-	96	83.714	Otolemur_garnettii
ENSSLDG00000020161	-	100	98.165	ENSPKIG00000019329	pcbp3	100	98.165	Paramormyrops_kingsleyae
ENSSLDG00000020161	-	77	84.211	ENSPKIG00000020913	-	82	84.211	Paramormyrops_kingsleyae
ENSSLDG00000020161	-	93	83.489	ENSPSIG00000014970	-	95	84.112	Pelodiscus_sinensis
ENSSLDG00000020161	-	94	77.778	ENSPSIG00000008350	-	72	77.778	Pelodiscus_sinensis
ENSSLDG00000020161	-	100	90.857	ENSPMGG00000022383	pcbp3	100	90.857	Periophthalmus_magnuspinnatus
ENSSLDG00000020161	-	76	88.830	ENSPMAG00000004637	-	97	88.830	Petromyzon_marinus
ENSSLDG00000020161	-	94	74.522	ENSPMAG00000004551	pcbp3	90	74.522	Petromyzon_marinus
ENSSLDG00000020161	-	93	90.520	ENSPCIG00000028092	-	96	91.705	Phascolarctos_cinereus
ENSSLDG00000020161	-	94	92.500	ENSPLAG00000004074	-	89	92.500	Poecilia_latipinna
ENSSLDG00000020161	-	100	76.500	ENSPLAG00000011449	pcbp3	100	76.500	Poecilia_latipinna
ENSSLDG00000020161	-	100	90.113	ENSPMEG00000021239	pcbp3	100	90.113	Poecilia_mexicana
ENSSLDG00000020161	-	100	90.000	ENSPMEG00000006653	-	100	90.000	Poecilia_mexicana
ENSSLDG00000020161	-	95	92.949	ENSPREG00000015736	pcbp3	99	92.949	Poecilia_reticulata
ENSSLDG00000020161	-	95	96.463	ENSPREG00000020585	-	97	96.463	Poecilia_reticulata
ENSSLDG00000020161	-	95	96.463	ENSPNYG00000013205	-	97	96.463	Pundamilia_nyererei
ENSSLDG00000020161	-	95	94.839	ENSPNYG00000012326	pcbp3	95	94.839	Pundamilia_nyererei
ENSSLDG00000020161	-	100	88.889	ENSPNAG00000008541	-	98	93.506	Pygocentrus_nattereri
ENSSLDG00000020161	-	95	98.714	ENSPNAG00000015104	pcbp3	97	98.714	Pygocentrus_nattereri
ENSSLDG00000020161	-	93	97.368	ENSRNOG00000001245	Pcbp3	95	97.368	Rattus_norvegicus
ENSSLDG00000020161	-	93	85.443	ENSRBIG00000028177	-	87	85.443	Rhinopithecus_bieti
ENSSLDG00000020161	-	93	91.049	ENSSHAG00000007890	-	96	91.049	Sarcophilus_harrisii
ENSSLDG00000020161	-	100	98.777	ENSSFOG00015010205	pcbp3	100	98.777	Scleropages_formosus
ENSSLDG00000020161	-	92	85.430	ENSSFOG00015007118	-	93	85.430	Scleropages_formosus
ENSSLDG00000020161	-	100	90.000	ENSSFOG00015014706	pcbp3	100	90.000	Scleropages_formosus
ENSSLDG00000020161	-	100	99.083	ENSSMAG00000003135	-	100	99.083	Scophthalmus_maximus
ENSSLDG00000020161	-	95	95.161	ENSSMAG00000011929	pcbp3	97	95.161	Scophthalmus_maximus
ENSSLDG00000020161	-	100	93.636	ENSSDUG00000008502	-	100	93.636	Seriola_dumerili
ENSSLDG00000020161	-	95	87.761	ENSSDUG00000011608	pcbp3	99	87.761	Seriola_dumerili
ENSSLDG00000020161	-	98	74.380	ENSSPUG00000013214	-	90	84.080	Sphenodon_punctatus
ENSSLDG00000020161	-	91	95.053	ENSSPAG00000004190	-	97	95.053	Stegastes_partitus
ENSSLDG00000020161	-	100	78.571	ENSSPAG00000023341	-	100	78.571	Stegastes_partitus
ENSSLDG00000020161	-	93	90.461	ENSTGUG00000008158	-	96	90.461	Taeniopygia_guttata
ENSSLDG00000020161	-	93	87.963	ENSTGUG00000003316	-	96	87.963	Taeniopygia_guttata
ENSSLDG00000020161	-	91	99.281	ENSTRUG00000006280	-	89	99.281	Takifugu_rubripes
ENSSLDG00000020161	-	100	92.353	ENSTRUG00000013604	pcbp3	100	92.353	Takifugu_rubripes
ENSSLDG00000020161	-	93	84.150	ENSTTRG00000015075	-	96	84.150	Tursiops_truncatus
ENSSLDG00000020161	-	93	89.506	ENSXETG00000011483	pcbp1	96	89.506	Xenopus_tropicalis
ENSSLDG00000020161	-	93	74.504	ENSXETG00000010491	pcbp2	77	74.504	Xenopus_tropicalis
ENSSLDG00000020161	-	100	90.113	ENSXCOG00000020481	pcbp3	100	90.113	Xiphophorus_couchianus
ENSSLDG00000020161	-	100	99.694	ENSXMAG00000028711	-	100	99.694	Xiphophorus_maculatus
ENSSLDG00000020161	-	100	90.909	ENSXMAG00000008175	pcbp3	100	90.909	Xiphophorus_maculatus