EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000020727 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 37397 bases
Position: chrPEQF01099475.1:2199406-2236802
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000026681	zf-C2H2	PF00096.26	2.6e-49	1	7
ENSSLDP00000026681	zf-C2H2	PF00096.26	2.6e-49	2	7
ENSSLDP00000026681	zf-C2H2	PF00096.26	2.6e-49	3	7
ENSSLDP00000026681	zf-C2H2	PF00096.26	2.6e-49	4	7
ENSSLDP00000026681	zf-C2H2	PF00096.26	2.6e-49	5	7
ENSSLDP00000026681	zf-C2H2	PF00096.26	2.6e-49	6	7
ENSSLDP00000026681	zf-C2H2	PF00096.26	2.6e-49	7	7
ENSSLDP00000026735	zf-C2H2	PF00096.26	3.5e-41	1	6
ENSSLDP00000026735	zf-C2H2	PF00096.26	3.5e-41	2	6
ENSSLDP00000026735	zf-C2H2	PF00096.26	3.5e-41	3	6
ENSSLDP00000026735	zf-C2H2	PF00096.26	3.5e-41	4	6
ENSSLDP00000026735	zf-C2H2	PF00096.26	3.5e-41	5	6
ENSSLDP00000026735	zf-C2H2	PF00096.26	3.5e-41	6	6
ENSSLDP00000026716	zf-C2H2	PF00096.26	6.3e-40	1	6
ENSSLDP00000026716	zf-C2H2	PF00096.26	6.3e-40	2	6
ENSSLDP00000026716	zf-C2H2	PF00096.26	6.3e-40	3	6
ENSSLDP00000026716	zf-C2H2	PF00096.26	6.3e-40	4	6
ENSSLDP00000026716	zf-C2H2	PF00096.26	6.3e-40	5	6
ENSSLDP00000026716	zf-C2H2	PF00096.26	6.3e-40	6	6
ENSSLDP00000026745	zf-C2H2	PF00096.26	3.7e-37	1	5
ENSSLDP00000026745	zf-C2H2	PF00096.26	3.7e-37	2	5
ENSSLDP00000026745	zf-C2H2	PF00096.26	3.7e-37	3	5
ENSSLDP00000026745	zf-C2H2	PF00096.26	3.7e-37	4	5
ENSSLDP00000026745	zf-C2H2	PF00096.26	3.7e-37	5	5
ENSSLDP00000026681	zf-met	PF12874.7	3.3e-13	1	1
ENSSLDP00000026735	zf-met	PF12874.7	3.8e-10	1	1
ENSSLDP00000026745	zf-met	PF12874.7	1.4e-08	1	1
ENSSLDP00000026716	zf-met	PF12874.7	3.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000027554	-	930	-	ENSSLDP00000026735	309 (aa)	-	-
ENSSLDT00000027564	-	711	-	ENSSLDP00000026745	236 (aa)	-	-
ENSSLDT00000027498	-	978	-	ENSSLDP00000026681	325 (aa)	-	-
ENSSLDT00000027533	-	975	-	ENSSLDP00000026716	324 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000020727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000020727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000020727	-	94	45.783	ENSSLDG00000004005	-	74	45.783
ENSSLDG00000020727	-	91	43.902	ENSSLDG00000023661	-	86	42.268
ENSSLDG00000020727	-	97	41.364	ENSSLDG00000006288	-	95	40.865
ENSSLDG00000020727	-	99	45.578	ENSSLDG00000008645	-	88	47.465
ENSSLDG00000020727	-	93	32.735	ENSSLDG00000015796	-	75	32.735
ENSSLDG00000020727	-	96	38.365	ENSSLDG00000003269	znf710b	53	35.849
ENSSLDG00000020727	-	99	48.598	ENSSLDG00000012133	-	88	48.598
ENSSLDG00000020727	-	99	46.711	ENSSLDG00000016317	-	88	46.610
ENSSLDG00000020727	-	96	54.167	ENSSLDG00000007524	-	69	47.727
ENSSLDG00000020727	-	99	44.068	ENSSLDG00000004756	-	91	47.727
ENSSLDG00000020727	-	93	44.828	ENSSLDG00000011412	snai1a	57	47.297
ENSSLDG00000020727	-	96	46.243	ENSSLDG00000020655	-	57	46.243
ENSSLDG00000020727	-	95	46.988	ENSSLDG00000000432	-	99	51.887
ENSSLDG00000020727	-	96	39.062	ENSSLDG00000012852	snai2	72	44.737
ENSSLDG00000020727	-	95	42.188	ENSSLDG00000017166	scrt1b	58	42.188
ENSSLDG00000020727	-	98	43.750	ENSSLDG00000013565	scrt2	53	43.750
ENSSLDG00000020727	-	97	42.982	ENSSLDG00000006724	-	99	42.982
ENSSLDG00000020727	-	96	40.984	ENSSLDG00000023060	-	76	37.838
ENSSLDG00000020727	-	99	40.000	ENSSLDG00000000859	-	94	40.000
ENSSLDG00000020727	-	96	56.863	ENSSLDG00000013760	-	96	46.377
ENSSLDG00000020727	-	100	36.885	ENSSLDG00000018521	znf646	89	38.158
ENSSLDG00000020727	-	99	47.368	ENSSLDG00000011849	-	66	48.438
ENSSLDG00000020727	-	94	44.000	ENSSLDG00000017718	zbtb48	61	42.069
ENSSLDG00000020727	-	96	55.814	ENSSLDG00000018033	-	70	50.400
ENSSLDG00000020727	-	96	52.381	ENSSLDG00000006994	-	98	44.444
ENSSLDG00000020727	-	96	47.761	ENSSLDG00000000464	-	56	47.761
ENSSLDG00000020727	-	96	57.627	ENSSLDG00000000202	-	93	50.633
ENSSLDG00000020727	-	96	56.604	ENSSLDG00000000203	-	95	52.688
ENSSLDG00000020727	-	95	44.248	ENSSLDG00000017614	-	95	44.248
ENSSLDG00000020727	-	94	60.345	ENSSLDG00000004098	-	92	60.345
ENSSLDG00000020727	-	96	50.000	ENSSLDG00000009061	-	90	48.571
ENSSLDG00000020727	-	95	52.830	ENSSLDG00000006217	-	81	52.830
ENSSLDG00000020727	-	97	34.333	ENSSLDG00000014166	znf319b	84	33.634
ENSSLDG00000020727	-	96	49.405	ENSSLDG00000010390	-	84	49.405
ENSSLDG00000020727	-	96	50.909	ENSSLDG00000001787	zbtb24	96	55.000
ENSSLDG00000020727	-	95	52.830	ENSSLDG00000005868	-	83	52.830
ENSSLDG00000020727	-	71	63.636	ENSSLDG00000002284	-	86	63.636
ENSSLDG00000020727	-	96	45.113	ENSSLDG00000007826	ZBTB14	60	45.113
ENSSLDG00000020727	-	95	45.977	ENSSLDG00000013823	gfi1b	68	43.478
ENSSLDG00000020727	-	94	41.667	ENSSLDG00000014177	zbtb47b	69	45.000
ENSSLDG00000020727	-	97	42.857	ENSSLDG00000012415	si:dkey-89b17.4	60	42.857
ENSSLDG00000020727	-	95	37.500	ENSSLDG00000014465	-	80	51.163
ENSSLDG00000020727	-	97	32.524	ENSSLDG00000004428	PRDM15	50	35.088
ENSSLDG00000020727	-	96	47.126	ENSSLDG00000016512	gfi1aa	51	47.126
ENSSLDG00000020727	-	98	33.838	ENSSLDG00000001850	-	56	41.872
ENSSLDG00000020727	-	95	51.471	ENSSLDG00000009582	-	97	51.471
ENSSLDG00000020727	-	96	44.056	ENSSLDG00000020432	-	92	43.069
ENSSLDG00000020727	-	99	43.925	ENSSLDG00000012036	-	96	47.000
ENSSLDG00000020727	-	95	48.837	ENSSLDG00000009821	-	93	43.719
ENSSLDG00000020727	-	94	45.000	ENSSLDG00000002756	-	93	41.509
ENSSLDG00000020727	-	95	47.619	ENSSLDG00000010190	-	77	47.059
ENSSLDG00000020727	-	98	53.333	ENSSLDG00000015116	-	68	53.333
ENSSLDG00000020727	-	95	54.348	ENSSLDG00000018598	-	90	54.348
ENSSLDG00000020727	-	98	46.000	ENSSLDG00000019660	znf341	50	46.000
ENSSLDG00000020727	-	95	51.351	ENSSLDG00000007568	-	79	50.794
ENSSLDG00000020727	-	98	43.478	ENSSLDG00000012320	-	97	47.222
ENSSLDG00000020727	-	99	47.561	ENSSLDG00000001860	-	88	46.774
ENSSLDG00000020727	-	96	53.030	ENSSLDG00000020990	-	63	50.000
ENSSLDG00000020727	-	97	35.061	ENSSLDG00000024295	ZNF319	94	37.981
ENSSLDG00000020727	-	97	48.485	ENSSLDG00000005850	-	97	48.485
ENSSLDG00000020727	-	95	54.098	ENSSLDG00000002515	-	71	51.948
ENSSLDG00000020727	-	96	48.438	ENSSLDG00000014436	-	71	50.820
ENSSLDG00000020727	-	98	50.000	ENSSLDG00000007756	-	93	50.000
ENSSLDG00000020727	-	97	63.830	ENSSLDG00000021127	-	50	63.830
ENSSLDG00000020727	-	96	44.828	ENSSLDG00000004485	-	73	44.828
ENSSLDG00000020727	-	96	46.250	ENSSLDG00000012821	znf236	71	47.115
ENSSLDG00000020727	-	96	40.580	ENSSLDG00000016301	-	91	41.176
ENSSLDG00000020727	-	92	51.389	ENSSLDG00000015049	-	93	57.778
ENSSLDG00000020727	-	99	45.614	ENSSLDG00000018273	-	90	49.438
ENSSLDG00000020727	-	99	54.762	ENSSLDG00000020675	-	94	54.762
ENSSLDG00000020727	-	96	43.919	ENSSLDG00000005999	-	65	43.956
ENSSLDG00000020727	-	96	36.364	ENSSLDG00000017138	znf384l	50	35.714
ENSSLDG00000020727	-	98	38.418	ENSSLDG00000002776	-	67	42.574
ENSSLDG00000020727	-	95	39.344	ENSSLDG00000021177	zbtb41	61	39.344
ENSSLDG00000020727	-	97	44.828	ENSSLDG00000020455	-	86	47.619
ENSSLDG00000020727	-	97	45.000	ENSSLDG00000021278	-	64	45.000
ENSSLDG00000020727	-	96	36.986	ENSSLDG00000013353	prdm5	76	37.241
ENSSLDG00000020727	-	98	48.598	ENSSLDG00000000376	-	80	41.176
ENSSLDG00000020727	-	96	59.524	ENSSLDG00000000352	-	75	59.524
ENSSLDG00000020727	-	88	54.348	ENSSLDG00000025265	znf526	50	54.348
ENSSLDG00000020727	-	96	41.026	ENSSLDG00000025359	-	55	47.826
ENSSLDG00000020727	-	94	43.750	ENSSLDG00000016454	-	51	43.750
ENSSLDG00000020727	-	97	46.875	ENSSLDG00000000457	-	76	46.875
ENSSLDG00000020727	-	97	48.810	ENSSLDG00000017937	-	99	45.259
ENSSLDG00000020727	-	98	54.688	ENSSLDG00000018493	-	84	54.688
ENSSLDG00000020727	-	94	40.000	ENSSLDG00000005670	-	96	42.222
ENSSLDG00000020727	-	95	51.282	ENSSLDG00000013170	zbtb17	84	51.282
ENSSLDG00000020727	-	96	38.889	ENSSLDG00000005839	-	67	44.976

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000020727	-	93	45.918	ENSAPOG00000004328	-	88	42.708	Acanthochromis_polyacanthus
ENSSLDG00000020727	-	95	47.239	ENSAPOG00000013511	-	56	38.119	Acanthochromis_polyacanthus
ENSSLDG00000020727	-	96	45.455	ENSACIG00000010739	-	79	45.455	Amphilophus_citrinellus
ENSSLDG00000020727	-	97	38.462	ENSAOCG00000007045	-	86	42.289	Amphiprion_ocellaris
ENSSLDG00000020727	-	97	39.437	ENSAPEG00000001596	-	83	44.595	Amphiprion_percula
ENSSLDG00000020727	-	94	44.660	ENSAPEG00000016483	-	56	65.217	Amphiprion_percula
ENSSLDG00000020727	-	97	38.769	ENSATEG00000006085	-	85	42.708	Anabas_testudineus
ENSSLDG00000020727	-	97	47.977	ENSACAG00000000082	-	99	48.498	Anolis_carolinensis
ENSSLDG00000020727	-	96	46.591	ENSACAG00000025537	-	97	46.748	Anolis_carolinensis
ENSSLDG00000020727	-	97	46.524	ENSAMXG00000026143	-	98	50.746	Astyanax_mexicanus
ENSSLDG00000020727	-	95	38.306	ENSAMXG00000017199	-	50	41.143	Astyanax_mexicanus
ENSSLDG00000020727	-	97	50.746	ENSAMXG00000012873	-	99	44.843	Astyanax_mexicanus
ENSSLDG00000020727	-	96	47.647	ENSAMXG00000033013	-	81	49.767	Astyanax_mexicanus
ENSSLDG00000020727	-	96	50.000	ENSAMXG00000035145	-	65	50.000	Astyanax_mexicanus
ENSSLDG00000020727	-	95	48.322	ENSAMXG00000036257	-	93	48.361	Astyanax_mexicanus
ENSSLDG00000020727	-	91	50.746	ENSAMXG00000032237	-	92	50.746	Astyanax_mexicanus
ENSSLDG00000020727	-	95	45.545	ENSAMXG00000035949	-	80	50.661	Astyanax_mexicanus
ENSSLDG00000020727	-	96	40.000	ENSCVAG00000011235	-	89	42.268	Cyprinodon_variegatus
ENSSLDG00000020727	-	97	45.902	ENSELUG00000021287	-	95	39.510	Esox_lucius
ENSSLDG00000020727	-	96	54.545	ENSELUG00000013357	-	86	54.545	Esox_lucius
ENSSLDG00000020727	-	95	45.714	ENSELUG00000013844	-	80	38.596	Esox_lucius
ENSSLDG00000020727	-	97	47.619	ENSFHEG00000019915	-	74	65.152	Fundulus_heteroclitus
ENSSLDG00000020727	-	88	55.769	ENSGMOG00000003238	-	100	45.714	Gadus_morhua
ENSSLDG00000020727	-	97	40.615	ENSGAFG00000012977	-	91	40.615	Gambusia_affinis
ENSSLDG00000020727	-	99	56.061	ENSGAFG00000003150	-	97	45.283	Gambusia_affinis
ENSSLDG00000020727	-	99	49.123	ENSIPUG00000021556	-	97	44.221	Ictalurus_punctatus
ENSSLDG00000020727	-	96	53.271	ENSIPUG00000004428	-	77	53.271	Ictalurus_punctatus
ENSSLDG00000020727	-	98	53.846	ENSIPUG00000006916	-	83	41.958	Ictalurus_punctatus
ENSSLDG00000020727	-	97	42.202	ENSKMAG00000004988	-	90	38.562	Kryptolebias_marmoratus
ENSSLDG00000020727	-	97	47.179	ENSLOCG00000014144	-	99	48.052	Lepisosteus_oculatus
ENSSLDG00000020727	-	95	48.649	ENSLOCG00000014366	-	94	48.649	Lepisosteus_oculatus
ENSSLDG00000020727	-	96	47.826	ENSMAMG00000019301	-	93	48.485	Mastacembelus_armatus
ENSSLDG00000020727	-	96	43.357	ENSMAMG00000016542	-	63	65.217	Mastacembelus_armatus
ENSSLDG00000020727	-	95	55.556	ENSMMOG00000009852	-	86	55.556	Mola_mola
ENSSLDG00000020727	-	99	42.000	ENSMALG00000005554	-	88	63.768	Monopterus_albus
ENSSLDG00000020727	-	97	40.453	ENSOCUG00000005876	-	100	45.794	Oryctolagus_cuniculus
ENSSLDG00000020727	-	96	45.455	ENSPKIG00000006616	-	59	46.245	Paramormyrops_kingsleyae
ENSSLDG00000020727	-	95	40.449	ENSPMGG00000017633	-	92	41.593	Periophthalmus_magnuspinnatus
ENSSLDG00000020727	-	97	41.546	ENSPFOG00000010682	-	94	41.546	Poecilia_formosa
ENSSLDG00000020727	-	99	38.776	ENSPLAG00000002892	-	77	41.096	Poecilia_latipinna
ENSSLDG00000020727	-	97	40.000	ENSPMEG00000001399	-	90	41.294	Poecilia_mexicana
ENSSLDG00000020727	-	97	40.615	ENSPREG00000001386	-	91	40.615	Poecilia_reticulata
ENSSLDG00000020727	-	97	48.000	ENSPREG00000002582	-	70	39.614	Poecilia_reticulata
ENSSLDG00000020727	-	94	50.962	ENSPNAG00000015116	-	70	46.154	Pygocentrus_nattereri
ENSSLDG00000020727	-	90	51.000	ENSPNAG00000000219	-	87	55.385	Pygocentrus_nattereri
ENSSLDG00000020727	-	96	41.104	ENSPNAG00000025570	-	80	42.697	Pygocentrus_nattereri
ENSSLDG00000020727	-	99	45.455	ENSSFOG00015006108	-	57	48.936	Scleropages_formosus
ENSSLDG00000020727	-	95	59.091	ENSSMAG00000009115	-	86	63.043	Scophthalmus_maximus
ENSSLDG00000020727	-	97	42.708	ENSSDUG00000006463	-	99	42.708	Seriola_dumerili
ENSSLDG00000020727	-	95	52.941	ENSSDUG00000002195	-	95	63.415	Seriola_dumerili
ENSSLDG00000020727	-	99	93.243	ENSSPAG00000021008	-	94	93.243	Stegastes_partitus
ENSSLDG00000020727	-	96	37.607	ENSSPAG00000012960	-	80	44.608	Stegastes_partitus
ENSSLDG00000020727	-	97	48.485	ENSTRUG00000005321	-	98	43.750	Takifugu_rubripes
ENSSLDG00000020727	-	99	45.312	ENSTRUG00000021675	-	83	41.667	Takifugu_rubripes
ENSSLDG00000020727	-	99	37.430	ENSTNIG00000008200	-	98	43.421	Tetraodon_nigroviridis
ENSSLDG00000020727	-	88	90.000	ENSTNIG00000000320	-	99	90.000	Tetraodon_nigroviridis
ENSSLDG00000020727	-	95	51.235	ENSXETG00000006575	znf420	86	42.321	Xenopus_tropicalis
ENSSLDG00000020727	-	99	53.731	ENSXCOG00000009665	-	86	51.948	Xiphophorus_couchianus
ENSSLDG00000020727	-	97	40.308	ENSXMAG00000028625	-	91	40.308	Xiphophorus_maculatus