EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000020747 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 15461 bases
Position: chrPEQF01099046.1:56611-72071
Accession: 111662657
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000026686	EST1	PF10374.9	1.9e-13	1	1
ENSSLDP00000026686	EST1_DNA_bind	PF10373.9	1.1e-56	1	1
ENSSLDP00000026686	PIN_4	PF13638.6	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000027504	-	7579	XM_023416590	ENSSLDP00000026686	1539 (aa)	XP_023272358	-

Gene Model

Click here to download ENSSLDG00000020747's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000020747's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000020747	smg6	77	54.045	ENSG00000070366	SMG6	100	52.353	Homo_sapiens
ENSSLDG00000020747	smg6	98	83.377	ENSAPOG00000019448	smg6	91	83.826	Acanthochromis_polyacanthus
ENSSLDG00000020747	smg6	83	52.057	ENSAMEG00000007632	SMG6	86	52.105	Ailuropoda_melanoleuca
ENSSLDG00000020747	smg6	98	78.477	ENSACIG00000012997	smg6	97	78.146	Amphilophus_citrinellus
ENSSLDG00000020747	smg6	98	83.706	ENSAOCG00000002630	smg6	91	84.418	Amphiprion_ocellaris
ENSSLDG00000020747	smg6	98	83.377	ENSAPEG00000019101	smg6	91	84.089	Amphiprion_percula
ENSSLDG00000020747	smg6	98	82.797	ENSATEG00000006483	smg6	91	82.731	Anabas_testudineus
ENSSLDG00000020747	smg6	67	50.141	ENSACAG00000011783	SMG6	72	54.978	Anolis_carolinensis
ENSSLDG00000020747	smg6	77	54.157	ENSANAG00000035760	SMG6	80	54.281	Aotus_nancymaae
ENSSLDG00000020747	smg6	98	80.962	ENSACLG00000005288	smg6	97	81.167	Astatotilapia_calliptera
ENSSLDG00000020747	smg6	66	68.231	ENSAMXG00000017326	smg6	84	68.102	Astyanax_mexicanus
ENSSLDG00000020747	smg6	83	51.766	ENSBTAG00000000267	SMG6	86	52.108	Bos_taurus
ENSSLDG00000020747	smg6	77	54.295	ENSCJAG00000001820	SMG6	80	54.120	Callithrix_jacchus
ENSSLDG00000020747	smg6	77	54.849	ENSCAFG00000019260	SMG6	80	55.012	Canis_familiaris
ENSSLDG00000020747	smg6	77	54.849	ENSCAFG00020009770	SMG6	80	55.012	Canis_lupus_dingo
ENSSLDG00000020747	smg6	83	51.802	ENSCHIG00000021998	SMG6	86	52.309	Capra_hircus
ENSSLDG00000020747	smg6	77	53.821	ENSTSYG00000003406	SMG6	91	55.666	Carlito_syrichta
ENSSLDG00000020747	smg6	85	41.931	ENSCAPG00000016197	SMG6	77	49.620	Cavia_aperea
ENSSLDG00000020747	smg6	85	50.294	ENSCPOG00000014878	SMG6	84	59.906	Cavia_porcellus
ENSSLDG00000020747	smg6	77	53.834	ENSCCAG00000035801	SMG6	80	54.039	Cebus_capucinus
ENSSLDG00000020747	smg6	77	53.964	ENSCATG00000031956	SMG6	80	54.089	Cercocebus_atys
ENSSLDG00000020747	smg6	83	51.606	ENSCLAG00000006748	SMG6	84	58.962	Chinchilla_lanigera
ENSSLDG00000020747	smg6	77	54.207	ENSCSAG00000013800	SMG6	80	54.332	Chlorocebus_sabaeus
ENSSLDG00000020747	smg6	77	54.325	ENSCPBG00000020369	SMG6	79	53.902	Chrysemys_picta_bellii
ENSSLDG00000020747	smg6	83	51.690	ENSCANG00000031764	SMG6	91	56.461	Colobus_angolensis_palliatus
ENSSLDG00000020747	smg6	83	47.491	ENSCGRG00000007782	Smg6	87	47.888	Cricetulus_griseus_crigri
ENSSLDG00000020747	smg6	98	74.590	ENSCSEG00000012757	smg6	95	75.542	Cynoglossus_semilaevis
ENSSLDG00000020747	smg6	98	70.039	ENSCVAG00000012789	smg6	90	69.909	Cyprinodon_variegatus
ENSSLDG00000020747	smg6	95	59.079	ENSDARG00000100481	smg6	88	57.549	Danio_rerio
ENSSLDG00000020747	smg6	77	53.560	ENSDNOG00000048283	SMG6	82	52.793	Dasypus_novemcinctus
ENSSLDG00000020747	smg6	80	48.988	ENSDORG00000016614	Smg6	84	59.434	Dipodomys_ordii
ENSSLDG00000020747	smg6	75	49.015	ENSETEG00000016790	SMG6	73	51.339	Echinops_telfairi
ENSSLDG00000020747	smg6	61	45.575	ENSEBUG00000005059	smg6	60	45.566	Eptatretus_burgeri
ENSSLDG00000020747	smg6	79	53.380	ENSEASG00005009318	SMG6	80	54.663	Equus_asinus_asinus
ENSSLDG00000020747	smg6	79	53.458	ENSECAG00000006519	SMG6	80	54.745	Equus_caballus
ENSSLDG00000020747	smg6	77	45.085	ENSEEUG00000003493	SMG6	76	55.190	Erinaceus_europaeus
ENSSLDG00000020747	smg6	97	64.183	ENSELUG00000005934	smg6	89	68.223	Esox_lucius
ENSSLDG00000020747	smg6	83	52.521	ENSFCAG00000028817	SMG6	86	52.564	Felis_catus
ENSSLDG00000020747	smg6	77	54.776	ENSFALG00000006538	SMG6	81	54.702	Ficedula_albicollis
ENSSLDG00000020747	smg6	81	51.415	ENSFDAG00000015106	SMG6	84	58.491	Fukomys_damarensis
ENSSLDG00000020747	smg6	98	71.682	ENSFHEG00000013282	smg6	90	71.616	Fundulus_heteroclitus
ENSSLDG00000020747	smg6	77	53.803	ENSGALG00000003108	SMG6	83	51.207	Gallus_gallus
ENSSLDG00000020747	smg6	98	72.870	ENSGAFG00000000379	smg6	91	72.477	Gambusia_affinis
ENSSLDG00000020747	smg6	88	79.487	ENSGACG00000020521	smg6	95	80.960	Gasterosteus_aculeatus
ENSSLDG00000020747	smg6	83	51.309	ENSGAGG00000025617	SMG6	86	51.020	Gopherus_agassizii
ENSSLDG00000020747	smg6	77	53.796	ENSGGOG00000017156	SMG6	80	54.163	Gorilla_gorilla
ENSSLDG00000020747	smg6	98	80.554	ENSHBUG00000021311	smg6	91	80.817	Haplochromis_burtoni
ENSSLDG00000020747	smg6	81	52.619	ENSHGLG00000012882	SMG6	84	58.962	Heterocephalus_glaber_female
ENSSLDG00000020747	smg6	81	52.696	ENSHGLG00100017815	SMG6	84	58.962	Heterocephalus_glaber_male
ENSSLDG00000020747	smg6	67	70.503	ENSHCOG00000008761	smg6	79	71.083	Hippocampus_comes
ENSSLDG00000020747	smg6	95	55.981	ENSIPUG00000012493	smg6	88	56.640	Ictalurus_punctatus
ENSSLDG00000020747	smg6	83	51.353	ENSSTOG00000028127	SMG6	84	58.962	Ictidomys_tridecemlineatus
ENSSLDG00000020747	smg6	61	50.806	ENSJJAG00000015367	Smg6	62	56.273	Jaculus_jaculus
ENSSLDG00000020747	smg6	98	74.606	ENSKMAG00000000279	smg6	91	74.541	Kryptolebias_marmoratus
ENSSLDG00000020747	smg6	98	82.326	ENSLBEG00000002184	smg6	91	82.194	Labrus_bergylta
ENSSLDG00000020747	smg6	69	65.306	ENSLOCG00000006448	smg6	97	55.861	Lepisosteus_oculatus
ENSSLDG00000020747	smg6	77	53.543	ENSLAFG00000001261	SMG6	80	53.647	Loxodonta_africana
ENSSLDG00000020747	smg6	77	54.207	ENSMFAG00000003394	SMG6	80	54.332	Macaca_fascicularis
ENSSLDG00000020747	smg6	77	54.045	ENSMMUG00000023161	SMG6	80	54.170	Macaca_mulatta
ENSSLDG00000020747	smg6	83	49.361	ENSMNEG00000044592	SMG6	85	49.021	Macaca_nemestrina
ENSSLDG00000020747	smg6	72	57.875	ENSMLEG00000029353	SMG6	81	57.824	Mandrillus_leucophaeus
ENSSLDG00000020747	smg6	98	84.824	ENSMAMG00000020119	smg6	97	84.824	Mastacembelus_armatus
ENSSLDG00000020747	smg6	98	80.751	ENSMZEG00005024736	smg6	91	80.883	Maylandia_zebra
ENSSLDG00000020747	smg6	59	50.104	ENSMGAG00000005401	-	83	49.740	Meleagris_gallopavo
ENSSLDG00000020747	smg6	83	51.891	ENSMICG00000012913	SMG6	80	54.420	Microcebus_murinus
ENSSLDG00000020747	smg6	98	74.128	ENSMMOG00000010883	smg6	91	74.391	Mola_mola
ENSSLDG00000020747	smg6	98	83.816	ENSMALG00000001106	smg6	91	83.750	Monopterus_albus
ENSSLDG00000020747	smg6	77	53.710	MGP_CAROLIEiJ_G0016729	Smg6	98	64.946	Mus_caroli
ENSSLDG00000020747	smg6	77	53.505	ENSMUSG00000038290	Smg6	97	65.460	Mus_musculus
ENSSLDG00000020747	smg6	83	50.558	MGP_PahariEiJ_G0017866	Smg6	96	66.571	Mus_pahari
ENSSLDG00000020747	smg6	82	51.504	MGP_SPRETEiJ_G0017572	Smg6	97	65.181	Mus_spretus
ENSSLDG00000020747	smg6	83	51.982	ENSMPUG00000013046	SMG6	86	52.223	Mustela_putorius_furo
ENSSLDG00000020747	smg6	83	51.732	ENSMLUG00000005739	SMG6	86	52.108	Myotis_lucifugus
ENSSLDG00000020747	smg6	82	51.142	ENSNGAG00000007287	Smg6	84	58.962	Nannospalax_galili
ENSSLDG00000020747	smg6	98	76.695	ENSNBRG00000009511	smg6	96	79.252	Neolamprologus_brichardi
ENSSLDG00000020747	smg6	77	54.288	ENSNLEG00000017171	SMG6	91	56.064	Nomascus_leucogenys
ENSSLDG00000020747	smg6	77	53.970	ENSMEUG00000015804	SMG6	82	54.002	Notamacropus_eugenii
ENSSLDG00000020747	smg6	55	62.176	ENSOPRG00000000579	SMG6	82	62.500	Ochotona_princeps
ENSSLDG00000020747	smg6	83	45.999	ENSODEG00000008038	SMG6	81	52.601	Octodon_degus
ENSSLDG00000020747	smg6	98	80.645	ENSONIG00000005594	smg6	91	82.853	Oreochromis_niloticus
ENSSLDG00000020747	smg6	77	54.082	ENSOCUG00000013018	SMG6	80	54.170	Oryctolagus_cuniculus
ENSSLDG00000020747	smg6	98	70.144	ENSORLG00000003317	smg6	91	70.735	Oryzias_latipes
ENSSLDG00000020747	smg6	98	70.395	ENSORLG00020015343	smg6	91	70.743	Oryzias_latipes_hni
ENSSLDG00000020747	smg6	98	70.480	ENSORLG00015020454	smg6	91	71.072	Oryzias_latipes_hsok
ENSSLDG00000020747	smg6	98	69.914	ENSOMEG00000010838	smg6	90	71.231	Oryzias_melastigma
ENSSLDG00000020747	smg6	77	54.126	ENSOGAG00000004483	SMG6	80	54.120	Otolemur_garnettii
ENSSLDG00000020747	smg6	83	51.877	ENSOARG00000015076	SMG6	88	52.233	Ovis_aries
ENSSLDG00000020747	smg6	77	53.883	ENSPPAG00000043296	SMG6	80	54.008	Pan_paniscus
ENSSLDG00000020747	smg6	83	52.445	ENSPPRG00000014581	SMG6	86	52.489	Panthera_pardus
ENSSLDG00000020747	smg6	83	52.445	ENSPTIG00000008925	SMG6	91	56.262	Panthera_tigris_altaica
ENSSLDG00000020747	smg6	77	54.045	ENSPTRG00000008544	SMG6	91	56.064	Pan_troglodytes
ENSSLDG00000020747	smg6	77	54.126	ENSPANG00000024588	SMG6	80	54.332	Papio_anubis
ENSSLDG00000020747	smg6	71	53.152	ENSPSIG00000006660	SMG6	81	52.838	Pelodiscus_sinensis
ENSSLDG00000020747	smg6	92	80.576	ENSPMGG00000000844	smg6	89	79.568	Periophthalmus_magnuspinnatus
ENSSLDG00000020747	smg6	77	54.224	ENSPEMG00000020707	Smg6	85	59.434	Peromyscus_maniculatus_bairdii
ENSSLDG00000020747	smg6	98	73.950	ENSPFOG00000012035	smg6	87	76.694	Poecilia_formosa
ENSSLDG00000020747	smg6	98	74.147	ENSPLAG00000017660	smg6	90	73.753	Poecilia_latipinna
ENSSLDG00000020747	smg6	98	74.016	ENSPMEG00000000258	smg6	90	73.753	Poecilia_mexicana
ENSSLDG00000020747	smg6	98	73.180	ENSPREG00000010066	smg6	90	72.852	Poecilia_reticulata
ENSSLDG00000020747	smg6	96	44.677	ENSPPYG00000007790	SMG6	80	50.322	Pongo_abelii
ENSSLDG00000020747	smg6	73	57.286	ENSPCAG00000000552	SMG6	76	57.468	Procavia_capensis
ENSSLDG00000020747	smg6	83	51.662	ENSPCOG00000020925	SMG6	80	54.133	Propithecus_coquereli
ENSSLDG00000020747	smg6	72	61.570	ENSPVAG00000002159	SMG6	74	52.170	Pteropus_vampyrus
ENSSLDG00000020747	smg6	98	76.786	ENSPNYG00000024151	smg6	96	79.292	Pundamilia_nyererei
ENSSLDG00000020747	smg6	96	54.527	ENSPNAG00000015480	smg6	88	54.899	Pygocentrus_nattereri
ENSSLDG00000020747	smg6	82	51.168	ENSRNOG00000003041	Smg6	97	65.217	Rattus_norvegicus
ENSSLDG00000020747	smg6	77	54.008	ENSRBIG00000024746	SMG6	80	54.251	Rhinopithecus_bieti
ENSSLDG00000020747	smg6	77	54.008	ENSRROG00000030423	SMG6	91	56.461	Rhinopithecus_roxellana
ENSSLDG00000020747	smg6	77	53.672	ENSSBOG00000022518	SMG6	79	53.140	Saimiri_boliviensis_boliviensis
ENSSLDG00000020747	smg6	77	54.737	ENSSHAG00000010045	SMG6	80	54.612	Sarcophilus_harrisii
ENSSLDG00000020747	smg6	95	54.746	ENSSFOG00015005436	smg6	84	55.126	Scleropages_formosus
ENSSLDG00000020747	smg6	98	84.757	ENSSMAG00000019777	smg6	91	84.560	Scophthalmus_maximus
ENSSLDG00000020747	smg6	98	98.878	ENSSDUG00000016412	smg6	91	98.878	Seriola_dumerili
ENSSLDG00000020747	smg6	77	53.934	ENSSPUG00000007152	SMG6	80	53.528	Sphenodon_punctatus
ENSSLDG00000020747	smg6	98	84.221	ENSSPAG00000015633	smg6	91	84.352	Stegastes_partitus
ENSSLDG00000020747	smg6	83	52.042	ENSSSCG00000017826	SMG6	90	51.503	Sus_scrofa
ENSSLDG00000020747	smg6	82	51.779	ENSTGUG00000005836	SMG6	85	51.745	Taeniopygia_guttata
ENSSLDG00000020747	smg6	97	69.231	ENSTRUG00000000358	smg6	95	71.899	Takifugu_rubripes
ENSSLDG00000020747	smg6	86	80.278	ENSTNIG00000016164	smg6	90	80.984	Tetraodon_nigroviridis
ENSSLDG00000020747	smg6	77	51.454	ENSTBEG00000011424	SMG6	80	51.375	Tupaia_belangeri
ENSSLDG00000020747	smg6	74	59.119	ENSTTRG00000001175	SMG6	76	58.904	Tursiops_truncatus
ENSSLDG00000020747	smg6	83	52.090	ENSUAMG00000025152	SMG6	88	52.141	Ursus_americanus
ENSSLDG00000020747	smg6	83	51.982	ENSUMAG00000009306	SMG6	88	52.105	Ursus_maritimus
ENSSLDG00000020747	smg6	70	95.833	ENSVPAG00000000225	SMG6	76	95.833	Vicugna_pacos
ENSSLDG00000020747	smg6	77	55.066	ENSVVUG00000021727	SMG6	81	54.330	Vulpes_vulpes
ENSSLDG00000020747	smg6	86	47.595	ENSXETG00000023799	SMG6	84	49.799	Xenopus_tropicalis
ENSSLDG00000020747	smg6	98	71.288	ENSXCOG00000009867	smg6	91	70.492	Xiphophorus_couchianus
ENSSLDG00000020747	smg6	98	73.705	ENSXMAG00000010321	smg6	91	73.180	Xiphophorus_maculatus