EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000020807 (Gene tree)
Gene ID: -
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 11109 bases
Position: chrPEQF01099137.1:93030-104138
Accession: 111665754
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	1	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	2	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	3	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	4	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	5	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	6	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	7	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	8	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	9	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	10	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	11	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	12	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	13	14
ENSSLDP00000026832	KH_1	PF00013.29	6.4e-189	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000027660	-	3792	XM_023420836	ENSSLDP00000026832	1263 (aa)	XP_023276604	-

Gene Model

Click here to download ENSSLDG00000020807's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000020807's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000020807	hdlbpb	100	71.139	ENSSLDG00000004437	hdlbpa	100	70.983

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000020807	hdlbpb	100	97.792	ENSAPOG00000006904	hdlbpb	100	97.792	Acanthochromis_polyacanthus
ENSSLDG00000020807	hdlbpb	100	92.908	ENSACIG00000016154	hdlbpb	100	92.908	Amphilophus_citrinellus
ENSSLDG00000020807	hdlbpb	100	98.344	ENSAOCG00000004083	hdlbpb	100	98.344	Amphiprion_ocellaris
ENSSLDG00000020807	hdlbpb	100	98.265	ENSAPEG00000012270	hdlbpb	100	98.265	Amphiprion_percula
ENSSLDG00000020807	hdlbpb	100	96.609	ENSATEG00000019877	hdlbpb	100	96.609	Anabas_testudineus
ENSSLDG00000020807	hdlbpb	100	81.768	ENSACAG00000003606	-	100	81.768	Anolis_carolinensis
ENSSLDG00000020807	hdlbpb	100	97.161	ENSACLG00000006618	hdlbpb	100	97.161	Astatotilapia_calliptera
ENSSLDG00000020807	hdlbpb	100	77.795	ENSAMXG00000019946	hdlbpb	100	77.795	Astyanax_mexicanus
ENSSLDG00000020807	hdlbpb	100	96.215	ENSCSEG00000000955	hdlbpb	100	96.215	Cynoglossus_semilaevis
ENSSLDG00000020807	hdlbpb	100	96.057	ENSCVAG00000005345	hdlbpb	100	96.057	Cyprinodon_variegatus
ENSSLDG00000020807	hdlbpb	99	85.261	ENSDARG00000061864	hdlbpb	99	85.261	Danio_rerio
ENSSLDG00000020807	hdlbpb	92	70.043	ENSEBUG00000005304	hdlbpb	94	71.016	Eptatretus_burgeri
ENSSLDG00000020807	hdlbpb	100	78.285	ENSELUG00000019925	hdlbpb	100	78.442	Esox_lucius
ENSSLDG00000020807	hdlbpb	87	34.775	ENSFHEG00000001701	hdlbpb	100	90.995	Fundulus_heteroclitus
ENSSLDG00000020807	hdlbpb	95	88.310	ENSGMOG00000004522	hdlbpb	78	88.310	Gadus_morhua
ENSSLDG00000020807	hdlbpb	100	95.584	ENSGAFG00000005278	hdlbpb	100	95.584	Gambusia_affinis
ENSSLDG00000020807	hdlbpb	99	92.581	ENSGACG00000019361	hdlbpb	100	92.818	Gasterosteus_aculeatus
ENSSLDG00000020807	hdlbpb	100	97.003	ENSHBUG00000018434	hdlbpb	100	97.003	Haplochromis_burtoni
ENSSLDG00000020807	hdlbpb	100	85.106	ENSIPUG00000003291	HDLBP	100	85.515	Ictalurus_punctatus
ENSSLDG00000020807	hdlbpb	100	96.609	ENSKMAG00000016562	hdlbpb	100	96.609	Kryptolebias_marmoratus
ENSSLDG00000020807	hdlbpb	100	96.924	ENSLBEG00000027855	hdlbpb	100	96.924	Labrus_bergylta
ENSSLDG00000020807	hdlbpb	100	85.189	ENSLACG00000007661	hdlbpb	91	85.189	Latimeria_chalumnae
ENSSLDG00000020807	hdlbpb	100	82.808	ENSLOCG00000013909	hdlbpb	100	82.808	Lepisosteus_oculatus
ENSSLDG00000020807	hdlbpb	100	97.319	ENSMAMG00000003035	hdlbpb	100	97.319	Mastacembelus_armatus
ENSSLDG00000020807	hdlbpb	100	97.161	ENSMZEG00005021465	hdlbpb	100	97.161	Maylandia_zebra
ENSSLDG00000020807	hdlbpb	100	96.206	ENSMMOG00000012525	hdlbpb	100	96.206	Mola_mola
ENSSLDG00000020807	hdlbpb	100	95.110	ENSMALG00000008938	hdlbpb	100	95.110	Monopterus_albus
ENSSLDG00000020807	hdlbpb	100	97.240	ENSNBRG00000002236	hdlbpb	100	97.240	Neolamprologus_brichardi
ENSSLDG00000020807	hdlbpb	100	96.924	ENSONIG00000009211	hdlbpb	100	96.924	Oreochromis_niloticus
ENSSLDG00000020807	hdlbpb	100	94.953	ENSORLG00000006581	hdlbpb	100	94.953	Oryzias_latipes
ENSSLDG00000020807	hdlbpb	100	95.189	ENSORLG00020010012	hdlbpb	100	95.189	Oryzias_latipes_hni
ENSSLDG00000020807	hdlbpb	100	95.268	ENSORLG00015006863	hdlbpb	100	95.268	Oryzias_latipes_hsok
ENSSLDG00000020807	hdlbpb	100	95.426	ENSOMEG00000011131	hdlbpb	100	95.426	Oryzias_melastigma
ENSSLDG00000020807	hdlbpb	100	88.713	ENSPKIG00000005966	hdlbpb	100	88.713	Paramormyrops_kingsleyae
ENSSLDG00000020807	hdlbpb	86	92.778	ENSPMGG00000019853	hdlbpb	99	92.778	Periophthalmus_magnuspinnatus
ENSSLDG00000020807	hdlbpb	94	74.671	ENSPMAG00000002131	hdlbpb	100	74.671	Petromyzon_marinus
ENSSLDG00000020807	hdlbpb	92	64.901	ENSPMAG00000000249	-	99	64.968	Petromyzon_marinus
ENSSLDG00000020807	hdlbpb	100	95.008	ENSPFOG00000008755	hdlbpb	100	95.008	Poecilia_formosa
ENSSLDG00000020807	hdlbpb	100	96.057	ENSPLAG00000007055	hdlbpb	100	96.057	Poecilia_latipinna
ENSSLDG00000020807	hdlbpb	100	95.978	ENSPMEG00000001952	hdlbpb	100	95.978	Poecilia_mexicana
ENSSLDG00000020807	hdlbpb	100	95.978	ENSPREG00000012848	hdlbpb	100	95.978	Poecilia_reticulata
ENSSLDG00000020807	hdlbpb	100	97.310	ENSPNYG00000022467	hdlbpb	100	97.310	Pundamilia_nyererei
ENSSLDG00000020807	hdlbpb	100	87.609	ENSPNAG00000011104	hdlbpb	100	87.609	Pygocentrus_nattereri
ENSSLDG00000020807	hdlbpb	100	88.003	ENSSFOG00015023199	hdlbpb	100	88.003	Scleropages_formosus
ENSSLDG00000020807	hdlbpb	100	96.767	ENSSMAG00000008790	hdlbpb	100	96.767	Scophthalmus_maximus
ENSSLDG00000020807	hdlbpb	100	99.290	ENSSDUG00000020694	hdlbpb	100	99.290	Seriola_dumerili
ENSSLDG00000020807	hdlbpb	100	82.557	ENSSPUG00000018688	-	100	82.557	Sphenodon_punctatus
ENSSLDG00000020807	hdlbpb	100	98.265	ENSSPAG00000016969	hdlbpb	100	98.265	Stegastes_partitus
ENSSLDG00000020807	hdlbpb	98	92.631	ENSTRUG00000012888	hdlbpb	99	92.552	Takifugu_rubripes
ENSSLDG00000020807	hdlbpb	99	93.887	ENSTNIG00000002555	hdlbpb	100	93.887	Tetraodon_nigroviridis
ENSSLDG00000020807	hdlbpb	100	69.037	ENSXCOG00000001797	hdlbpb	100	69.037	Xiphophorus_couchianus
ENSSLDG00000020807	hdlbpb	100	95.189	ENSXMAG00000015633	hdlbpb	100	95.189	Xiphophorus_maculatus