EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000020868 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 10652 bases
Position: chrPEQF01099345.1:566739-577390
Accession: 111671095
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000026875	UPF1_Zn_bind	PF09416.10	1.9e-75	1	1
ENSSLDP00000026875	ResIII	PF04851.15	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000027706	-	3318	XM_023428106	ENSSLDP00000026875	1105 (aa)	XP_023283874	-

Gene Model

Click here to download ENSSLDG00000020868's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000020868's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000020868	upf1	100	93.237	ENSSLDG00000006878	-	100	92.876

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000020868	upf1	100	91.143	ENSG00000005007	UPF1	100	90.683	Homo_sapiens
ENSSLDG00000020868	upf1	100	93.231	ENSAPOG00000010916	-	100	92.870	Acanthochromis_polyacanthus
ENSSLDG00000020868	upf1	100	97.939	ENSAPOG00000023773	upf1	100	97.939	Acanthochromis_polyacanthus
ENSSLDG00000020868	upf1	100	90.661	ENSAMEG00000011474	UPF1	100	90.203	Ailuropoda_melanoleuca
ENSSLDG00000020868	upf1	100	97.378	ENSACIG00000019949	upf1	100	97.378	Amphilophus_citrinellus
ENSSLDG00000020868	upf1	93	92.740	ENSACIG00000010985	-	100	92.159	Amphilophus_citrinellus
ENSSLDG00000020868	upf1	100	93.231	ENSAOCG00000006352	-	100	92.870	Amphiprion_ocellaris
ENSSLDG00000020868	upf1	100	98.029	ENSAOCG00000018519	upf1	100	98.029	Amphiprion_ocellaris
ENSSLDG00000020868	upf1	100	93.231	ENSAPEG00000006292	-	100	92.870	Amphiprion_percula
ENSSLDG00000020868	upf1	100	98.029	ENSAPEG00000016344	upf1	100	98.029	Amphiprion_percula
ENSSLDG00000020868	upf1	100	97.937	ENSATEG00000017867	upf1	100	97.937	Anabas_testudineus
ENSSLDG00000020868	upf1	100	93.231	ENSATEG00000016606	-	100	92.870	Anabas_testudineus
ENSSLDG00000020868	upf1	95	92.857	ENSAPLG00000009175	UPF1	100	92.279	Anas_platyrhynchos
ENSSLDG00000020868	upf1	95	91.046	ENSANAG00000024107	UPF1	95	90.463	Aotus_nancymaae
ENSSLDG00000020868	upf1	100	97.468	ENSACLG00000007181	upf1	100	97.468	Astatotilapia_calliptera
ENSSLDG00000020868	upf1	100	92.979	ENSACLG00000022630	-	100	92.690	Astatotilapia_calliptera
ENSSLDG00000020868	upf1	100	94.404	ENSAMXG00000042187	upf1	100	94.123	Astyanax_mexicanus
ENSSLDG00000020868	upf1	100	90.677	ENSBTAG00000020922	UPF1	100	90.220	Bos_taurus
ENSSLDG00000020868	upf1	81	54.353	WBGene00004880	smg-2	83	54.353	Caenorhabditis_elegans
ENSSLDG00000020868	upf1	100	90.263	ENSCJAG00000019627	UPF1	100	89.807	Callithrix_jacchus
ENSSLDG00000020868	upf1	100	90.439	ENSCAFG00000014578	UPF1	100	89.982	Canis_familiaris
ENSSLDG00000020868	upf1	100	91.320	ENSCAFG00020012347	UPF1	100	90.861	Canis_lupus_dingo
ENSSLDG00000020868	upf1	100	91.563	ENSCHIG00000011018	UPF1	100	91.103	Capra_hircus
ENSSLDG00000020868	upf1	95	92.460	ENSTSYG00000008877	UPF1	98	91.879	Carlito_syrichta
ENSSLDG00000020868	upf1	96	91.519	ENSCAPG00000005758	UPF1	95	91.785	Cavia_aperea
ENSSLDG00000020868	upf1	100	91.347	ENSCPOG00000025463	UPF1	100	90.974	Cavia_porcellus
ENSSLDG00000020868	upf1	100	91.143	ENSCCAG00000032175	UPF1	100	90.683	Cebus_capucinus
ENSSLDG00000020868	upf1	94	92.431	ENSCATG00000040306	UPF1	98	91.690	Cercocebus_atys
ENSSLDG00000020868	upf1	95	92.271	ENSCLAG00000004037	UPF1	99	91.879	Chinchilla_lanigera
ENSSLDG00000020868	upf1	100	91.143	ENSCSAG00000005276	UPF1	100	90.683	Chlorocebus_sabaeus
ENSSLDG00000020868	upf1	100	91.808	ENSCPBG00000012513	UPF1	100	91.258	Chrysemys_picta_bellii
ENSSLDG00000020868	upf1	77	79.930	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSSLDG00000020868	upf1	99	72.386	ENSCSAVG00000006533	-	99	72.103	Ciona_savignyi
ENSSLDG00000020868	upf1	95	92.366	ENSCANG00000029819	UPF1	97	91.785	Colobus_angolensis_palliatus
ENSSLDG00000020868	upf1	100	91.192	ENSCGRG00001021067	Upf1	100	90.909	Cricetulus_griseus_chok1gshd
ENSSLDG00000020868	upf1	95	91.989	ENSCGRG00000013480	Upf1	98	91.596	Cricetulus_griseus_crigri
ENSSLDG00000020868	upf1	100	90.696	ENSCSEG00000017239	upf1	100	91.147	Cynoglossus_semilaevis
ENSSLDG00000020868	upf1	100	93.417	ENSCSEG00000016159	-	100	92.593	Cynoglossus_semilaevis
ENSSLDG00000020868	upf1	100	92.690	ENSCVAG00000010561	upf1	100	92.238	Cyprinodon_variegatus
ENSSLDG00000020868	upf1	100	94.314	ENSDARG00000016302	upf1	100	94.033	Danio_rerio
ENSSLDG00000020868	upf1	95	89.925	ENSDORG00000009984	Upf1	95	89.434	Dipodomys_ordii
ENSSLDG00000020868	upf1	84	72.572	FBgn0030354	Upf1	81	71.443	Drosophila_melanogaster
ENSSLDG00000020868	upf1	54	87.086	ENSEBUG00000010069	upf1	96	87.417	Eptatretus_burgeri
ENSSLDG00000020868	upf1	100	91.474	ENSEASG00005006549	UPF1	100	91.103	Equus_asinus_asinus
ENSSLDG00000020868	upf1	100	91.474	ENSECAG00000010639	UPF1	100	91.103	Equus_caballus
ENSSLDG00000020868	upf1	100	92.735	ENSELUG00000012916	-	100	92.536	Esox_lucius
ENSSLDG00000020868	upf1	100	93.896	ENSELUG00000020917	upf1	100	93.671	Esox_lucius
ENSSLDG00000020868	upf1	100	90.439	ENSFCAG00000009757	UPF1	100	89.982	Felis_catus
ENSSLDG00000020868	upf1	95	93.377	ENSFALG00000009312	UPF1	96	92.796	Ficedula_albicollis
ENSSLDG00000020868	upf1	95	92.177	ENSFDAG00000014816	UPF1	99	91.785	Fukomys_damarensis
ENSSLDG00000020868	upf1	87	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSSLDG00000020868	upf1	100	93.184	ENSFHEG00000006428	upf1	100	92.439	Fundulus_heteroclitus
ENSSLDG00000020868	upf1	100	91.339	ENSGMOG00000007541	upf1	100	91.339	Gadus_morhua
ENSSLDG00000020868	upf1	100	91.571	ENSGALG00000003220	UPF1	100	90.933	Gallus_gallus
ENSSLDG00000020868	upf1	63	96.686	ENSGAFG00000015443	-	85	96.686	Gambusia_affinis
ENSSLDG00000020868	upf1	100	92.870	ENSGAFG00000004831	upf1	100	92.329	Gambusia_affinis
ENSSLDG00000020868	upf1	100	92.308	ENSGAGG00000022217	UPF1	100	91.846	Gopherus_agassizii
ENSSLDG00000020868	upf1	95	93.333	ENSGGOG00000002608	UPF1	99	92.748	Gorilla_gorilla
ENSSLDG00000020868	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSLDG00000020868	upf1	89	97.436	ENSHBUG00000014694	upf1	100	97.436	Haplochromis_burtoni
ENSSLDG00000020868	upf1	100	90.263	ENSHGLG00000010900	UPF1	100	89.895	Heterocephalus_glaber_female
ENSSLDG00000020868	upf1	95	90.669	ENSHGLG00100005904	UPF1	96	90.179	Heterocephalus_glaber_male
ENSSLDG00000020868	upf1	100	92.690	ENSHCOG00000008918	upf1	100	92.238	Hippocampus_comes
ENSSLDG00000020868	upf1	100	94.585	ENSIPUG00000005108	UPF1	100	94.213	Ictalurus_punctatus
ENSSLDG00000020868	upf1	100	91.054	ENSSTOG00000009196	UPF1	100	90.683	Ictidomys_tridecemlineatus
ENSSLDG00000020868	upf1	100	90.468	ENSJJAG00000023151	Upf1	100	90.186	Jaculus_jaculus
ENSSLDG00000020868	upf1	100	92.780	ENSKMAG00000004962	upf1	100	92.419	Kryptolebias_marmoratus
ENSSLDG00000020868	upf1	100	97.222	ENSLBEG00000014862	upf1	100	97.222	Labrus_bergylta
ENSSLDG00000020868	upf1	100	92.967	ENSLBEG00000027848	-	100	92.606	Labrus_bergylta
ENSSLDG00000020868	upf1	64	93.059	ENSLACG00000008482	UPF1	100	91.761	Latimeria_chalumnae
ENSSLDG00000020868	upf1	100	93.767	ENSLOCG00000002072	upf1	100	93.496	Lepisosteus_oculatus
ENSSLDG00000020868	upf1	100	90.158	ENSLAFG00000014963	UPF1	100	89.789	Loxodonta_africana
ENSSLDG00000020868	upf1	100	90.901	ENSMFAG00000037748	UPF1	100	90.442	Macaca_fascicularis
ENSSLDG00000020868	upf1	100	90.661	ENSMMUG00000023286	UPF1	100	90.203	Macaca_mulatta
ENSSLDG00000020868	upf1	100	90.901	ENSMNEG00000000046	UPF1	100	90.442	Macaca_nemestrina
ENSSLDG00000020868	upf1	95	92.366	ENSMLEG00000028404	UPF1	99	91.785	Mandrillus_leucophaeus
ENSSLDG00000020868	upf1	100	98.117	ENSMAMG00000006229	upf1	100	98.117	Mastacembelus_armatus
ENSSLDG00000020868	upf1	100	92.786	ENSMAMG00000006231	-	100	92.696	Mastacembelus_armatus
ENSSLDG00000020868	upf1	100	92.979	ENSMZEG00005016386	-	100	92.690	Maylandia_zebra
ENSSLDG00000020868	upf1	100	96.864	ENSMZEG00005003489	upf1	100	96.864	Maylandia_zebra
ENSSLDG00000020868	upf1	95	92.373	ENSMGAG00000004745	UPF1	100	91.792	Meleagris_gallopavo
ENSSLDG00000020868	upf1	95	91.989	ENSMAUG00000011398	Upf1	95	91.596	Mesocricetus_auratus
ENSSLDG00000020868	upf1	100	91.143	ENSMICG00000001659	UPF1	100	90.772	Microcebus_murinus
ENSSLDG00000020868	upf1	100	90.308	ENSMOCG00000005699	Upf1	100	90.115	Microtus_ochrogaster
ENSSLDG00000020868	upf1	95	90.494	ENSMMOG00000007537	-	99	90.114	Mola_mola
ENSSLDG00000020868	upf1	100	96.109	ENSMMOG00000007881	upf1	100	96.109	Mola_mola
ENSSLDG00000020868	upf1	100	90.464	ENSMODG00000003689	UPF1	100	90.096	Monodelphis_domestica
ENSSLDG00000020868	upf1	100	96.561	ENSMALG00000000144	upf1	100	96.561	Monopterus_albus
ENSSLDG00000020868	upf1	100	91.906	ENSMALG00000018100	-	100	91.547	Monopterus_albus
ENSSLDG00000020868	upf1	100	91.103	MGP_CAROLIEiJ_G0031142	Upf1	100	90.820	Mus_caroli
ENSSLDG00000020868	upf1	100	91.103	ENSMUSG00000058301	Upf1	100	90.820	Mus_musculus
ENSSLDG00000020868	upf1	100	91.103	MGP_PahariEiJ_G0021607	Upf1	100	90.820	Mus_pahari
ENSSLDG00000020868	upf1	100	91.103	MGP_SPRETEiJ_G0032260	Upf1	100	90.820	Mus_spretus
ENSSLDG00000020868	upf1	100	91.320	ENSMPUG00000015516	UPF1	100	90.861	Mustela_putorius_furo
ENSSLDG00000020868	upf1	99	91.200	ENSMLUG00000012122	UPF1	99	90.739	Myotis_lucifugus
ENSSLDG00000020868	upf1	100	89.895	ENSNGAG00000024107	Upf1	100	89.613	Nannospalax_galili
ENSSLDG00000020868	upf1	100	94.575	ENSNBRG00000000670	upf1	100	94.027	Neolamprologus_brichardi
ENSSLDG00000020868	upf1	100	89.583	ENSNBRG00000022069	-	100	91.699	Neolamprologus_brichardi
ENSSLDG00000020868	upf1	95	86.711	ENSNLEG00000006062	UPF1	99	86.119	Nomascus_leucogenys
ENSSLDG00000020868	upf1	83	86.731	ENSMEUG00000014146	-	83	85.521	Notamacropus_eugenii
ENSSLDG00000020868	upf1	95	86.667	ENSOPRG00000014018	UPF1	88	90.252	Ochotona_princeps
ENSSLDG00000020868	upf1	100	91.250	ENSODEG00000012426	UPF1	100	90.966	Octodon_degus
ENSSLDG00000020868	upf1	100	96.953	ENSONIG00000010452	upf1	100	96.953	Oreochromis_niloticus
ENSSLDG00000020868	upf1	100	93.141	ENSONIG00000012729	-	100	92.690	Oreochromis_niloticus
ENSSLDG00000020868	upf1	100	90.598	ENSOANG00000004568	UPF1	100	89.965	Ornithorhynchus_anatinus
ENSSLDG00000020868	upf1	100	92.703	ENSORLG00000008453	upf1	100	91.968	Oryzias_latipes
ENSSLDG00000020868	upf1	100	92.619	ENSORLG00020014758	upf1	100	91.885	Oryzias_latipes_hni
ENSSLDG00000020868	upf1	100	92.619	ENSORLG00015010165	upf1	100	91.885	Oryzias_latipes_hsok
ENSSLDG00000020868	upf1	100	93.063	ENSOMEG00000003665	upf1	100	92.329	Oryzias_melastigma
ENSSLDG00000020868	upf1	100	91.231	ENSOGAG00000012866	UPF1	100	90.772	Otolemur_garnettii
ENSSLDG00000020868	upf1	96	89.507	ENSOARG00000010739	UPF1	100	88.940	Ovis_aries
ENSSLDG00000020868	upf1	95	92.366	ENSPPAG00000043884	UPF1	96	91.785	Pan_paniscus
ENSSLDG00000020868	upf1	100	90.439	ENSPPRG00000023470	UPF1	100	89.982	Panthera_pardus
ENSSLDG00000020868	upf1	95	91.350	ENSPTIG00000010159	UPF1	99	90.762	Panthera_tigris_altaica
ENSSLDG00000020868	upf1	100	90.901	ENSPTRG00000010721	UPF1	100	90.442	Pan_troglodytes
ENSSLDG00000020868	upf1	100	90.901	ENSPANG00000008847	UPF1	100	90.442	Papio_anubis
ENSSLDG00000020868	upf1	89	97.169	ENSPKIG00000006069	upf1	95	97.169	Paramormyrops_kingsleyae
ENSSLDG00000020868	upf1	70	91.742	ENSPSIG00000009491	UPF1	100	90.944	Pelodiscus_sinensis
ENSSLDG00000020868	upf1	100	93.502	ENSPMGG00000017327	upf1	100	92.613	Periophthalmus_magnuspinnatus
ENSSLDG00000020868	upf1	100	90.308	ENSPEMG00000001085	Upf1	100	90.026	Peromyscus_maniculatus_bairdii
ENSSLDG00000020868	upf1	100	86.840	ENSPMAG00000001206	upf1	100	86.906	Petromyzon_marinus
ENSSLDG00000020868	upf1	100	91.844	ENSPCIG00000006156	UPF1	100	91.385	Phascolarctos_cinereus
ENSSLDG00000020868	upf1	100	92.870	ENSPLAG00000016232	-	100	92.329	Poecilia_latipinna
ENSSLDG00000020868	upf1	100	94.170	ENSPLAG00000018155	-	100	93.773	Poecilia_latipinna
ENSSLDG00000020868	upf1	100	95.023	ENSPMEG00000011443	-	100	94.118	Poecilia_mexicana
ENSSLDG00000020868	upf1	100	92.786	ENSPMEG00000016319	-	100	92.245	Poecilia_mexicana
ENSSLDG00000020868	upf1	100	92.690	ENSPREG00000011247	-	100	92.148	Poecilia_reticulata
ENSSLDG00000020868	upf1	100	93.912	ENSPREG00000009940	upf1	100	93.514	Poecilia_reticulata
ENSSLDG00000020868	upf1	100	85.501	ENSPPYG00000009752	UPF1	100	84.974	Pongo_abelii
ENSSLDG00000020868	upf1	75	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSSLDG00000020868	upf1	100	90.829	ENSPCOG00000023813	UPF1	100	90.459	Propithecus_coquereli
ENSSLDG00000020868	upf1	67	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSLDG00000020868	upf1	100	92.979	ENSPNYG00000016731	-	100	92.690	Pundamilia_nyererei
ENSSLDG00000020868	upf1	100	96.864	ENSPNYG00000003694	upf1	100	96.864	Pundamilia_nyererei
ENSSLDG00000020868	upf1	100	94.495	ENSPNAG00000025614	upf1	100	94.213	Pygocentrus_nattereri
ENSSLDG00000020868	upf1	100	91.103	ENSRNOG00000020134	Upf1	100	90.820	Rattus_norvegicus
ENSSLDG00000020868	upf1	95	90.009	ENSRBIG00000013894	UPF1	98	92.508	Rhinopithecus_bieti
ENSSLDG00000020868	upf1	95	92.366	ENSRROG00000040935	UPF1	98	92.508	Rhinopithecus_roxellana
ENSSLDG00000020868	upf1	72	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSSLDG00000020868	upf1	95	92.120	ENSSBOG00000023632	UPF1	96	91.541	Saimiri_boliviensis_boliviensis
ENSSLDG00000020868	upf1	95	92.756	ENSSHAG00000010499	UPF1	100	92.177	Sarcophilus_harrisii
ENSSLDG00000020868	upf1	100	93.868	ENSSFOG00015021095	upf1	100	93.592	Scleropages_formosus
ENSSLDG00000020868	upf1	100	96.505	ENSSMAG00000005055	upf1	100	96.505	Scophthalmus_maximus
ENSSLDG00000020868	upf1	100	92.883	ENSSMAG00000021018	-	100	92.606	Scophthalmus_maximus
ENSSLDG00000020868	upf1	100	99.103	ENSSDUG00000013320	upf1	100	99.103	Seriola_dumerili
ENSSLDG00000020868	upf1	100	93.237	ENSSDUG00000009629	-	100	92.876	Seriola_dumerili
ENSSLDG00000020868	upf1	100	91.875	ENSSPUG00000010538	UPF1	100	91.413	Sphenodon_punctatus
ENSSLDG00000020868	upf1	100	95.656	ENSSPAG00000000003	upf1	100	95.656	Stegastes_partitus
ENSSLDG00000020868	upf1	100	93.231	ENSSPAG00000011521	-	100	92.690	Stegastes_partitus
ENSSLDG00000020868	upf1	100	91.474	ENSSSCG00000039301	UPF1	99	92.762	Sus_scrofa
ENSSLDG00000020868	upf1	82	87.447	ENSTGUG00000001057	UPF1	100	91.272	Taeniopygia_guttata
ENSSLDG00000020868	upf1	100	95.699	ENSTRUG00000000150	upf1	100	95.699	Takifugu_rubripes
ENSSLDG00000020868	upf1	100	92.058	ENSTRUG00000005131	-	100	91.606	Takifugu_rubripes
ENSSLDG00000020868	upf1	100	87.833	ENSTTRG00000011544	UPF1	100	87.278	Tursiops_truncatus
ENSSLDG00000020868	upf1	100	91.320	ENSUAMG00000007093	UPF1	100	90.861	Ursus_americanus
ENSSLDG00000020868	upf1	95	93.441	ENSUMAG00000006652	UPF1	99	93.107	Ursus_maritimus
ENSSLDG00000020868	upf1	100	91.320	ENSVVUG00000007797	UPF1	100	90.861	Vulpes_vulpes
ENSSLDG00000020868	upf1	100	79.021	ENSXETG00000013602	upf1	100	78.371	Xenopus_tropicalis
ENSSLDG00000020868	upf1	97	93.820	ENSXCOG00000015275	-	96	93.446	Xiphophorus_couchianus
ENSSLDG00000020868	upf1	94	93.160	ENSXCOG00000005764	-	99	92.582	Xiphophorus_couchianus
ENSSLDG00000020868	upf1	100	93.937	ENSXMAG00000001703	-	100	93.575	Xiphophorus_maculatus
ENSSLDG00000020868	upf1	100	92.876	ENSXMAG00000002540	-	100	92.335	Xiphophorus_maculatus