EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000021135 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 3975 bases
Position: chrPEQF01099060.1:3810129-3814103
Accession: 111663819
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000027210	TUDOR	PF00567.24	6.9e-07	1	1
ENSSLDP00000027210	SMN	PF06003.12	3.8e-112	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000028045	-	1398	XM_023418156	ENSSLDP00000027210	284 (aa)	XP_023273924	UPI000C6F95F3

Gene Model

Click here to download ENSSLDG00000021135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000021135's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000021135	smn1	94	52.688	ENSG00000172062	SMN1	92	52.190	Homo_sapiens
ENSSLDG00000021135	smn1	94	52.688	ENSG00000205571	SMN2	92	52.190	Homo_sapiens
ENSSLDG00000021135	smn1	100	86.268	ENSAPOG00000011324	smn1	100	88.380	Acanthochromis_polyacanthus
ENSSLDG00000021135	smn1	94	53.430	ENSAMEG00000003316	-	89	52.158	Ailuropoda_melanoleuca
ENSSLDG00000021135	smn1	60	83.529	ENSACIG00000007598	smn1	94	83.529	Amphilophus_citrinellus
ENSSLDG00000021135	smn1	93	82.197	ENSACIG00000019772	-	99	82.197	Amphilophus_citrinellus
ENSSLDG00000021135	smn1	100	86.268	ENSAOCG00000024444	smn1	100	88.028	Amphiprion_ocellaris
ENSSLDG00000021135	smn1	100	86.620	ENSAPEG00000016504	smn1	100	88.380	Amphiprion_percula
ENSSLDG00000021135	smn1	95	89.630	ENSATEG00000002182	smn1	82	89.630	Anabas_testudineus
ENSSLDG00000021135	smn1	69	52.195	ENSAPLG00000010912	-	96	44.928	Anas_platyrhynchos
ENSSLDG00000021135	smn1	98	52.448	ENSACAG00000010017	-	96	51.916	Anolis_carolinensis
ENSSLDG00000021135	smn1	96	51.724	ENSANAG00000032133	-	95	48.780	Aotus_nancymaae
ENSSLDG00000021135	smn1	99	83.214	ENSACLG00000007308	smn1	94	83.214	Astatotilapia_calliptera
ENSSLDG00000021135	smn1	100	65.734	ENSAMXG00000013884	smn1	100	67.719	Astyanax_mexicanus
ENSSLDG00000021135	smn1	94	53.309	ENSBTAG00000005743	SMN2	93	51.264	Bos_taurus
ENSSLDG00000021135	smn1	94	52.330	ENSCJAG00000016290	-	92	53.114	Callithrix_jacchus
ENSSLDG00000021135	smn1	94	50.714	ENSCAFG00000007812	SMN	93	51.079	Canis_familiaris
ENSSLDG00000021135	smn1	94	50.714	ENSCAFG00020019229	-	86	51.079	Canis_lupus_dingo
ENSSLDG00000021135	smn1	94	54.044	ENSCHIG00000015559	-	91	51.625	Capra_hircus
ENSSLDG00000021135	smn1	94	53.986	ENSTSYG00000012058	-	93	53.261	Carlito_syrichta
ENSSLDG00000021135	smn1	77	42.291	ENSCAPG00000011021	-	88	38.073	Cavia_aperea
ENSSLDG00000021135	smn1	94	50.181	ENSCPOG00000036973	-	92	52.313	Cavia_porcellus
ENSSLDG00000021135	smn1	94	49.645	ENSCPOG00000012328	-	93	51.237	Cavia_porcellus
ENSSLDG00000021135	smn1	94	49.632	ENSCCAG00000018127	-	91	49.458	Cebus_capucinus
ENSSLDG00000021135	smn1	94	53.047	ENSCATG00000037002	-	92	52.555	Cercocebus_atys
ENSSLDG00000021135	smn1	94	51.613	ENSCLAG00000000284	-	92	51.237	Chinchilla_lanigera
ENSSLDG00000021135	smn1	94	53.047	ENSCSAG00000015688	-	91	52.650	Chlorocebus_sabaeus
ENSSLDG00000021135	smn1	50	60.959	ENSCHOG00000007346	-	68	55.556	Choloepus_hoffmanni
ENSSLDG00000021135	smn1	96	50.345	ENSCPBG00000010968	-	97	50.562	Chrysemys_picta_bellii
ENSSLDG00000021135	smn1	94	53.623	ENSCANG00000038242	-	93	53.309	Colobus_angolensis_palliatus
ENSSLDG00000021135	smn1	97	47.902	ENSCANG00000033324	-	94	48.601	Colobus_angolensis_palliatus
ENSSLDG00000021135	smn1	94	40.511	ENSCGRG00001016998	-	91	38.235	Cricetulus_griseus_chok1gshd
ENSSLDG00000021135	smn1	94	52.593	ENSCGRG00001017959	-	93	52.190	Cricetulus_griseus_chok1gshd
ENSSLDG00000021135	smn1	94	52.593	ENSCGRG00000007698	Smn1	93	52.190	Cricetulus_griseus_crigri
ENSSLDG00000021135	smn1	98	71.080	ENSCSEG00000015227	smn1	100	71.429	Cynoglossus_semilaevis
ENSSLDG00000021135	smn1	100	83.451	ENSCVAG00000007498	smn1	100	83.451	Cyprinodon_variegatus
ENSSLDG00000021135	smn1	100	65.854	ENSDARG00000018494	smn1	100	60.208	Danio_rerio
ENSSLDG00000021135	smn1	82	46.058	ENSDNOG00000007283	-	97	46.914	Dasypus_novemcinctus
ENSSLDG00000021135	smn1	82	42.553	ENSDNOG00000045949	-	76	49.724	Dasypus_novemcinctus
ENSSLDG00000021135	smn1	94	43.321	ENSDORG00000007082	Smn1	90	43.071	Dipodomys_ordii
ENSSLDG00000021135	smn1	58	47.619	ENSETEG00000001406	-	89	45.789	Echinops_telfairi
ENSSLDG00000021135	smn1	89	47.510	ENSEASG00005018000	-	89	47.710	Equus_asinus_asinus
ENSSLDG00000021135	smn1	94	52.174	ENSECAG00000015215	-	93	52.158	Equus_caballus
ENSSLDG00000021135	smn1	88	52.490	ENSEEUG00000015777	-	100	50.000	Erinaceus_europaeus
ENSSLDG00000021135	smn1	100	69.014	ENSELUG00000018067	smn1	100	69.014	Esox_lucius
ENSSLDG00000021135	smn1	94	53.069	ENSFCAG00000028292	SMN	93	52.518	Felis_catus
ENSSLDG00000021135	smn1	95	55.797	ENSFALG00000012320	-	95	50.714	Ficedula_albicollis
ENSSLDG00000021135	smn1	94	47.331	ENSFDAG00000017683	-	92	48.239	Fukomys_damarensis
ENSSLDG00000021135	smn1	97	84.838	ENSFHEG00000018508	smn1	100	84.116	Fundulus_heteroclitus
ENSSLDG00000021135	smn1	100	67.958	ENSGMOG00000017279	smn1	98	66.549	Gadus_morhua
ENSSLDG00000021135	smn1	95	51.971	ENSGALG00000002430	SMN	96	50.916	Gallus_gallus
ENSSLDG00000021135	smn1	100	86.268	ENSGAFG00000009501	smn1	100	86.268	Gambusia_affinis
ENSSLDG00000021135	smn1	100	84.155	ENSGACG00000010584	smn1	97	82.394	Gasterosteus_aculeatus
ENSSLDG00000021135	smn1	96	52.330	ENSGAGG00000011374	-	95	49.645	Gopherus_agassizii
ENSSLDG00000021135	smn1	98	37.313	ENSGAGG00000013639	-	92	37.313	Gopherus_agassizii
ENSSLDG00000021135	smn1	54	61.392	ENSGGOG00000026704	-	85	56.111	Gorilla_gorilla
ENSSLDG00000021135	smn1	91	50.379	ENSGGOG00000003872	-	93	48.669	Gorilla_gorilla
ENSSLDG00000021135	smn1	100	86.620	ENSHBUG00000013987	smn1	100	86.620	Haplochromis_burtoni
ENSSLDG00000021135	smn1	94	46.715	ENSHGLG00000001905	-	94	47.535	Heterocephalus_glaber_female
ENSSLDG00000021135	smn1	94	49.821	ENSHGLG00000001018	-	92	47.872	Heterocephalus_glaber_female
ENSSLDG00000021135	smn1	94	49.821	ENSHGLG00100011252	-	92	47.872	Heterocephalus_glaber_male
ENSSLDG00000021135	smn1	92	46.642	ENSHGLG00100018676	-	96	47.482	Heterocephalus_glaber_male
ENSSLDG00000021135	smn1	94	80.075	ENSHCOG00000017136	smn1	89	77.820	Hippocampus_comes
ENSSLDG00000021135	smn1	100	67.247	ENSIPUG00000012580	smn1	89	67.247	Ictalurus_punctatus
ENSSLDG00000021135	smn1	91	50.758	ENSSTOG00000012288	-	93	51.128	Ictidomys_tridecemlineatus
ENSSLDG00000021135	smn1	50	51.049	ENSJJAG00000014853	-	87	48.824	Jaculus_jaculus
ENSSLDG00000021135	smn1	100	83.972	ENSKMAG00000007239	smn1	100	83.972	Kryptolebias_marmoratus
ENSSLDG00000021135	smn1	100	86.620	ENSLBEG00000022550	smn1	100	86.620	Labrus_bergylta
ENSSLDG00000021135	smn1	99	33.224	ENSLACG00000009808	-	95	34.122	Latimeria_chalumnae
ENSSLDG00000021135	smn1	100	54.362	ENSLOCG00000011339	smn1	100	58.966	Lepisosteus_oculatus
ENSSLDG00000021135	smn1	94	52.381	ENSLAFG00000003425	-	89	52.482	Loxodonta_africana
ENSSLDG00000021135	smn1	94	53.405	ENSMFAG00000031523	SMN1	95	51.449	Macaca_fascicularis
ENSSLDG00000021135	smn1	94	50.179	ENSMFAG00000008812	-	91	49.640	Macaca_fascicularis
ENSSLDG00000021135	smn1	94	53.405	ENSMMUG00000020214	SMN1	92	53.285	Macaca_mulatta
ENSSLDG00000021135	smn1	94	49.462	ENSMMUG00000030594	-	91	47.535	Macaca_mulatta
ENSSLDG00000021135	smn1	76	41.485	ENSMNEG00000036423	-	81	40.553	Macaca_nemestrina
ENSSLDG00000021135	smn1	94	53.405	ENSMNEG00000035094	-	92	53.285	Macaca_nemestrina
ENSSLDG00000021135	smn1	94	53.763	ENSMLEG00000041902	-	93	53.285	Mandrillus_leucophaeus
ENSSLDG00000021135	smn1	100	88.732	ENSMAMG00000011034	smn1	100	88.732	Mastacembelus_armatus
ENSSLDG00000021135	smn1	100	86.972	ENSMZEG00005013634	smn1	100	86.972	Maylandia_zebra
ENSSLDG00000021135	smn1	69	49.254	ENSMGAG00000008889	-	94	41.837	Meleagris_gallopavo
ENSSLDG00000021135	smn1	94	52.593	ENSMAUG00000010262	Smn1	93	51.460	Mesocricetus_auratus
ENSSLDG00000021135	smn1	54	60.127	ENSMICG00000034708	-	81	55.000	Microcebus_murinus
ENSSLDG00000021135	smn1	94	53.333	ENSMOCG00000017833	Smn1	93	53.137	Microtus_ochrogaster
ENSSLDG00000021135	smn1	96	74.818	ENSMMOG00000005504	smn1	97	70.144	Mola_mola
ENSSLDG00000021135	smn1	94	56.569	ENSMODG00000001436	-	95	48.443	Monodelphis_domestica
ENSSLDG00000021135	smn1	100	89.085	ENSMALG00000008025	smn1	100	89.085	Monopterus_albus
ENSSLDG00000021135	smn1	94	52.347	MGP_CAROLIEiJ_G0018836	Smn1	93	52.030	Mus_caroli
ENSSLDG00000021135	smn1	94	51.986	ENSMUSG00000021645	Smn1	93	51.661	Mus_musculus
ENSSLDG00000021135	smn1	94	52.963	MGP_PahariEiJ_G0015911	Smn1	93	51.292	Mus_pahari
ENSSLDG00000021135	smn1	94	51.986	MGP_SPRETEiJ_G0019718	Smn1	93	51.661	Mus_spretus
ENSSLDG00000021135	smn1	92	53.309	ENSMPUG00000014470	-	93	52.015	Mustela_putorius_furo
ENSSLDG00000021135	smn1	94	50.704	ENSMLUG00000010603	-	89	51.761	Myotis_lucifugus
ENSSLDG00000021135	smn1	94	53.285	ENSNGAG00000019833	Smn1	93	51.825	Nannospalax_galili
ENSSLDG00000021135	smn1	100	88.380	ENSNBRG00000023000	smn1	100	88.380	Neolamprologus_brichardi
ENSSLDG00000021135	smn1	94	53.047	ENSNLEG00000004454	-	92	52.555	Nomascus_leucogenys
ENSSLDG00000021135	smn1	67	49.261	ENSMEUG00000011393	-	100	47.009	Notamacropus_eugenii
ENSSLDG00000021135	smn1	88	51.908	ENSOPRG00000002015	-	100	50.385	Ochotona_princeps
ENSSLDG00000021135	smn1	91	52.256	ENSODEG00000015976	-	91	52.555	Octodon_degus
ENSSLDG00000021135	smn1	100	88.380	ENSONIG00000011799	smn1	100	88.380	Oreochromis_niloticus
ENSSLDG00000021135	smn1	94	48.936	ENSOANG00000001626	-	95	47.887	Ornithorhynchus_anatinus
ENSSLDG00000021135	smn1	94	50.173	ENSOCUG00000026649	-	92	50.347	Oryctolagus_cuniculus
ENSSLDG00000021135	smn1	94	43.662	ENSOCUG00000025183	-	92	44.561	Oryctolagus_cuniculus
ENSSLDG00000021135	smn1	94	50.352	ENSOCUG00000017097	-	92	49.826	Oryctolagus_cuniculus
ENSSLDG00000021135	smn1	100	81.690	ENSORLG00000010552	smn1	100	81.690	Oryzias_latipes
ENSSLDG00000021135	smn1	100	75.789	ENSORLG00020007936	smn1	100	74.386	Oryzias_latipes_hni
ENSSLDG00000021135	smn1	100	81.338	ENSORLG00015022425	smn1	100	81.338	Oryzias_latipes_hsok
ENSSLDG00000021135	smn1	100	82.042	ENSOMEG00000007824	smn1	100	82.042	Oryzias_melastigma
ENSSLDG00000021135	smn1	91	48.507	ENSOGAG00000031414	-	92	47.970	Otolemur_garnettii
ENSSLDG00000021135	smn1	94	52.206	ENSOARG00000005425	-	98	49.458	Ovis_aries
ENSSLDG00000021135	smn1	94	52.688	ENSPPAG00000036640	-	92	52.190	Pan_paniscus
ENSSLDG00000021135	smn1	94	53.069	ENSPPRG00000005575	-	93	52.518	Panthera_pardus
ENSSLDG00000021135	smn1	94	53.405	ENSPTIG00000007745	-	93	52.518	Panthera_tigris_altaica
ENSSLDG00000021135	smn1	94	52.128	ENSPTRG00000016955	-	92	52.239	Pan_troglodytes
ENSSLDG00000021135	smn1	94	50.179	ENSPANG00000000253	-	91	50.000	Papio_anubis
ENSSLDG00000021135	smn1	94	53.405	ENSPANG00000013601	-	91	53.004	Papio_anubis
ENSSLDG00000021135	smn1	100	61.189	ENSPKIG00000011096	smn1	100	58.885	Paramormyrops_kingsleyae
ENSSLDG00000021135	smn1	92	51.087	ENSPSIG00000014787	-	83	49.438	Pelodiscus_sinensis
ENSSLDG00000021135	smn1	100	75.610	ENSPMGG00000012285	smn1	97	72.500	Periophthalmus_magnuspinnatus
ENSSLDG00000021135	smn1	92	40.511	ENSPMAG00000005004	smn1	91	35.088	Petromyzon_marinus
ENSSLDG00000021135	smn1	96	54.386	ENSPCIG00000025764	-	97	47.751	Phascolarctos_cinereus
ENSSLDG00000021135	smn1	100	85.915	ENSPFOG00000007786	smn1	100	85.915	Poecilia_formosa
ENSSLDG00000021135	smn1	100	86.268	ENSPLAG00000012071	smn1	100	86.268	Poecilia_latipinna
ENSSLDG00000021135	smn1	100	85.915	ENSPMEG00000017085	smn1	100	85.915	Poecilia_mexicana
ENSSLDG00000021135	smn1	100	85.915	ENSPREG00000005824	smn1	100	85.915	Poecilia_reticulata
ENSSLDG00000021135	smn1	92	51.103	ENSPPYG00000015533	-	95	50.362	Pongo_abelii
ENSSLDG00000021135	smn1	50	48.276	ENSPPYG00000019189	-	74	48.276	Pongo_abelii
ENSSLDG00000021135	smn1	91	50.570	ENSPCAG00000004187	-	98	47.826	Procavia_capensis
ENSSLDG00000021135	smn1	57	54.217	ENSPCOG00000022307	-	75	54.217	Propithecus_coquereli
ENSSLDG00000021135	smn1	94	53.623	ENSPVAG00000005977	-	92	52.878	Pteropus_vampyrus
ENSSLDG00000021135	smn1	100	88.380	ENSPNYG00000014148	smn1	100	88.380	Pundamilia_nyererei
ENSSLDG00000021135	smn1	100	66.202	ENSPNAG00000014007	smn1	87	68.182	Pygocentrus_nattereri
ENSSLDG00000021135	smn1	94	52.174	ENSRNOG00000018067	Smn1	92	51.661	Rattus_norvegicus
ENSSLDG00000021135	smn1	97	46.931	ENSRBIG00000036775	-	93	47.331	Rhinopithecus_bieti
ENSSLDG00000021135	smn1	94	53.047	ENSRBIG00000037052	-	91	52.650	Rhinopithecus_bieti
ENSSLDG00000021135	smn1	94	53.047	ENSRROG00000039399	-	94	51.034	Rhinopithecus_roxellana
ENSSLDG00000021135	smn1	94	48.708	ENSRROG00000031088	-	91	48.339	Rhinopithecus_roxellana
ENSSLDG00000021135	smn1	94	54.545	ENSSBOG00000011665	-	91	49.819	Saimiri_boliviensis_boliviensis
ENSSLDG00000021135	smn1	55	55.280	ENSSBOG00000020112	-	87	45.200	Saimiri_boliviensis_boliviensis
ENSSLDG00000021135	smn1	96	54.737	ENSSHAG00000001499	-	98	46.763	Sarcophilus_harrisii
ENSSLDG00000021135	smn1	100	62.457	ENSSFOG00015015507	smn1	100	62.116	Scleropages_formosus
ENSSLDG00000021135	smn1	100	83.803	ENSSMAG00000007922	smn1	100	85.915	Scophthalmus_maximus
ENSSLDG00000021135	smn1	100	99.648	ENSSDUG00000018533	smn1	100	99.648	Seriola_dumerili
ENSSLDG00000021135	smn1	97	55.789	ENSSPUG00000000373	-	99	51.034	Sphenodon_punctatus
ENSSLDG00000021135	smn1	100	89.085	ENSSPAG00000004345	smn1	100	89.437	Stegastes_partitus
ENSSLDG00000021135	smn1	94	51.986	ENSSSCG00000016970	-	92	53.047	Sus_scrofa
ENSSLDG00000021135	smn1	57	60.000	ENSSSCG00000029127	-	74	68.750	Sus_scrofa
ENSSLDG00000021135	smn1	91	51.449	ENSTGUG00000001548	-	95	46.667	Taeniopygia_guttata
ENSSLDG00000021135	smn1	100	72.183	ENSTRUG00000000736	smn	100	74.648	Takifugu_rubripes
ENSSLDG00000021135	smn1	100	70.103	ENSTNIG00000009892	smn1	100	72.509	Tetraodon_nigroviridis
ENSSLDG00000021135	smn1	54	61.783	ENSTBEG00000002399	-	87	56.906	Tupaia_belangeri
ENSSLDG00000021135	smn1	54	62.179	ENSTTRG00000005080	-	91	53.846	Tursiops_truncatus
ENSSLDG00000021135	smn1	54	62.821	ENSUAMG00000024947	-	66	57.459	Ursus_americanus
ENSSLDG00000021135	smn1	94	54.152	ENSUMAG00000007842	-	69	52.878	Ursus_maritimus
ENSSLDG00000021135	smn1	91	50.000	ENSVPAG00000009887	-	61	82.609	Vicugna_pacos
ENSSLDG00000021135	smn1	94	50.714	ENSVVUG00000006934	-	93	51.079	Vulpes_vulpes
ENSSLDG00000021135	smn1	87	32.046	ENSXETG00000004912	-	82	58.621	Xenopus_tropicalis
ENSSLDG00000021135	smn1	95	55.036	ENSXETG00000018189	smn2	95	49.655	Xenopus_tropicalis
ENSSLDG00000021135	smn1	100	85.211	ENSXMAG00000001521	smn1	100	85.211	Xiphophorus_maculatus