EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000021396 (Gene tree)
Gene ID: -
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 17746 bases
Position: chrPEQF01099417.1:507684-525429
Accession: 111644672
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000027586	Nucleoplasmin	PF03066.15	4.6e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000028425	-	4789	XM_023393617	ENSSLDP00000027586	298 (aa)	XP_023249385	UPI000C6F752F

Gene Model

Click here to download ENSSLDG00000021396's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000021396's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000021396	npm1b	95	42.525	ENSSLDG00000017849	npm1a	96	40.850

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000021396	npm1b	100	87.248	ENSAPOG00000004268	npm1b	100	87.584	Acanthochromis_polyacanthus
ENSSLDG00000021396	npm1b	100	88.255	ENSAOCG00000012549	npm1b	100	87.248	Amphiprion_ocellaris
ENSSLDG00000021396	npm1b	100	88.255	ENSAPEG00000000868	npm1b	100	86.577	Amphiprion_percula
ENSSLDG00000021396	npm1b	100	87.960	ENSATEG00000006254	npm1b	100	87.960	Anabas_testudineus
ENSSLDG00000021396	npm1b	95	43.878	ENSACAG00000015626	-	96	44.108	Anolis_carolinensis
ENSSLDG00000021396	npm1b	98	65.552	ENSAMXG00000042148	npm1b	99	63.961	Astyanax_mexicanus
ENSSLDG00000021396	npm1b	55	40.237	ENSCAFG00000023359	-	65	40.237	Canis_familiaris
ENSSLDG00000021396	npm1b	96	46.488	ENSCPBG00000021221	-	58	48.649	Chrysemys_picta_bellii
ENSSLDG00000021396	npm1b	100	82.000	ENSCSEG00000004530	npm1b	100	82.333	Cynoglossus_semilaevis
ENSSLDG00000021396	npm1b	100	77.592	ENSCVAG00000013016	npm1b	100	79.599	Cyprinodon_variegatus
ENSSLDG00000021396	npm1b	99	67.774	ENSDARG00000037675	npm1b	99	68.078	Danio_rerio
ENSSLDG00000021396	npm1b	99	65.461	ENSELUG00000022123	npm1b	99	65.132	Esox_lucius
ENSSLDG00000021396	npm1b	94	46.181	ENSFALG00000003320	-	94	47.222	Ficedula_albicollis
ENSSLDG00000021396	npm1b	100	78.073	ENSFHEG00000020794	npm1b	100	78.738	Fundulus_heteroclitus
ENSSLDG00000021396	npm1b	98	64.865	ENSGMOG00000002689	npm1b	100	66.554	Gadus_morhua
ENSSLDG00000021396	npm1b	98	45.752	ENSGALG00000002197	-	73	46.732	Gallus_gallus
ENSSLDG00000021396	npm1b	100	78.523	ENSGAFG00000017709	npm1b	100	78.523	Gambusia_affinis
ENSSLDG00000021396	npm1b	98	82.935	ENSGACG00000016706	npm1b	100	85.324	Gasterosteus_aculeatus
ENSSLDG00000021396	npm1b	95	45.791	ENSGAGG00000020250	-	96	47.475	Gopherus_agassizii
ENSSLDG00000021396	npm1b	100	82.943	ENSHBUG00000019903	npm1b	95	85.619	Haplochromis_burtoni
ENSSLDG00000021396	npm1b	100	78.667	ENSHCOG00000003895	npm1b	100	79.000	Hippocampus_comes
ENSSLDG00000021396	npm1b	99	61.000	ENSIPUG00000020165	npm1b	99	61.564	Ictalurus_punctatus
ENSSLDG00000021396	npm1b	99	84.354	ENSKMAG00000008260	npm1b	99	85.374	Kryptolebias_marmoratus
ENSSLDG00000021396	npm1b	64	87.958	ENSLBEG00000001304	-	94	88.482	Labrus_bergylta
ENSSLDG00000021396	npm1b	94	41.806	ENSLACG00000001779	-	100	40.816	Latimeria_chalumnae
ENSSLDG00000021396	npm1b	93	49.153	ENSLOCG00000001942	npm1b	100	49.324	Lepisosteus_oculatus
ENSSLDG00000021396	npm1b	72	82.648	ENSMAMG00000015335	npm1b	100	82.648	Mastacembelus_armatus
ENSSLDG00000021396	npm1b	93	45.965	ENSMGAG00000001591	-	100	47.018	Meleagris_gallopavo
ENSSLDG00000021396	npm1b	81	91.322	ENSMALG00000015383	npm1b	100	91.322	Monopterus_albus
ENSSLDG00000021396	npm1b	99	79.592	ENSONIG00000001397	npm1b	98	78.361	Oreochromis_niloticus
ENSSLDG00000021396	npm1b	100	69.128	ENSOMEG00000003414	npm1b	100	69.128	Oryzias_melastigma
ENSSLDG00000021396	npm1b	99	60.759	ENSPKIG00000020050	npm1b	99	61.076	Paramormyrops_kingsleyae
ENSSLDG00000021396	npm1b	96	46.980	ENSPSIG00000011204	-	92	46.980	Pelodiscus_sinensis
ENSSLDG00000021396	npm1b	93	37.716	ENSPMAG00000004930	npm1b	99	36.332	Petromyzon_marinus
ENSSLDG00000021396	npm1b	100	78.930	ENSPFOG00000018357	npm1b	100	78.930	Poecilia_formosa
ENSSLDG00000021396	npm1b	98	66.779	ENSPNAG00000005498	npm1b	99	67.450	Pygocentrus_nattereri
ENSSLDG00000021396	npm1b	99	57.383	ENSSFOG00015005064	npm1b	100	57.718	Scleropages_formosus
ENSSLDG00000021396	npm1b	100	89.933	ENSSMAG00000008088	npm1b	100	89.933	Scophthalmus_maximus
ENSSLDG00000021396	npm1b	100	99.664	ENSSDUG00000007726	npm1b	100	99.664	Seriola_dumerili
ENSSLDG00000021396	npm1b	50	50.943	ENSSPUG00000017271	-	80	50.617	Sphenodon_punctatus
ENSSLDG00000021396	npm1b	100	87.919	ENSSPAG00000011152	npm1b	100	87.919	Stegastes_partitus
ENSSLDG00000021396	npm1b	93	46.392	ENSTGUG00000014970	-	100	45.704	Taeniopygia_guttata
ENSSLDG00000021396	npm1b	100	80.333	ENSTRUG00000008105	npm1b	95	80.333	Takifugu_rubripes
ENSSLDG00000021396	npm1b	99	77.000	ENSTNIG00000013057	npm1b	100	77.333	Tetraodon_nigroviridis
ENSSLDG00000021396	npm1b	98	44.444	ENSXETG00000008403	npm1	97	42.484	Xenopus_tropicalis
ENSSLDG00000021396	npm1b	100	79.264	ENSXMAG00000001986	npm1b	100	79.599	Xiphophorus_maculatus