EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSLDG00000021543 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 15859 bases
Position: chrPEQF01098609.1:52274-68132
Accession: 111652960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000028059	XRN_N	PF03159.18	1.8e-96	1	1
ENSSLDP00000028036	XRN_N	PF03159.18	2e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000028902	-	4749	XM_023403378	ENSSLDP00000028059	1582 (aa)	XP_023259146	-
ENSSLDT00000028876	-	4965	-	ENSSLDP00000028036	1654 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000021543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000021543's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000021543	xrn1	100	71.429	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSSLDG00000021543	xrn1	100	84.781	ENSAPOG00000000622	xrn1	100	85.213	Acanthochromis_polyacanthus
ENSSLDG00000021543	xrn1	96	71.644	ENSAMEG00000012538	XRN1	94	69.243	Ailuropoda_melanoleuca
ENSSLDG00000021543	xrn1	100	87.299	ENSACIG00000001057	xrn1	99	88.627	Amphilophus_citrinellus
ENSSLDG00000021543	xrn1	100	89.466	ENSAOCG00000014097	xrn1	98	89.775	Amphiprion_ocellaris
ENSSLDG00000021543	xrn1	99	90.290	ENSAPEG00000006620	xrn1	95	90.603	Amphiprion_percula
ENSSLDG00000021543	xrn1	100	85.400	ENSATEG00000009752	xrn1	100	85.400	Anabas_testudineus
ENSSLDG00000021543	xrn1	98	68.812	ENSAPLG00000004905	XRN1	95	68.352	Anas_platyrhynchos
ENSSLDG00000021543	xrn1	100	67.399	ENSACAG00000004985	XRN1	96	67.399	Anolis_carolinensis
ENSSLDG00000021543	xrn1	100	71.895	ENSANAG00000029013	XRN1	99	73.744	Aotus_nancymaae
ENSSLDG00000021543	xrn1	99	88.732	ENSACLG00000004806	xrn1	98	88.732	Astatotilapia_calliptera
ENSSLDG00000021543	xrn1	99	75.562	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSSLDG00000021543	xrn1	100	71.736	ENSBTAG00000011524	XRN1	95	71.736	Bos_taurus
ENSSLDG00000021543	xrn1	75	37.957	WBGene00012730	xrn-1	80	37.280	Caenorhabditis_elegans
ENSSLDG00000021543	xrn1	100	71.531	ENSCJAG00000001872	XRN1	96	70.451	Callithrix_jacchus
ENSSLDG00000021543	xrn1	96	72.452	ENSCAFG00000007783	XRN1	94	72.329	Canis_familiaris
ENSSLDG00000021543	xrn1	96	72.452	ENSCAFG00020009120	XRN1	99	77.093	Canis_lupus_dingo
ENSSLDG00000021543	xrn1	99	71.815	ENSCHIG00000019192	XRN1	93	71.815	Capra_hircus
ENSSLDG00000021543	xrn1	100	70.209	ENSTSYG00000002705	XRN1	97	70.272	Carlito_syrichta
ENSSLDG00000021543	xrn1	53	86.047	ENSCAPG00000004604	-	94	86.047	Cavia_aperea
ENSSLDG00000021543	xrn1	100	70.365	ENSCCAG00000034800	XRN1	99	79.048	Cebus_capucinus
ENSSLDG00000021543	xrn1	97	71.587	ENSCATG00000041794	XRN1	95	71.736	Cercocebus_atys
ENSSLDG00000021543	xrn1	100	71.746	ENSCLAG00000001451	XRN1	99	79.114	Chinchilla_lanigera
ENSSLDG00000021543	xrn1	97	71.667	ENSCSAG00000011265	XRN1	95	71.815	Chlorocebus_sabaeus
ENSSLDG00000021543	xrn1	58	94.805	ENSCHOG00000013961	-	54	95.833	Choloepus_hoffmanni
ENSSLDG00000021543	xrn1	75	50.200	ENSCSAVG00000008584	-	93	50.250	Ciona_savignyi
ENSSLDG00000021543	xrn1	97	71.746	ENSCANG00000037495	XRN1	99	79.048	Colobus_angolensis_palliatus
ENSSLDG00000021543	xrn1	100	71.304	ENSCGRG00001019411	Xrn1	99	79.114	Cricetulus_griseus_chok1gshd
ENSSLDG00000021543	xrn1	100	71.304	ENSCGRG00000012464	Xrn1	99	79.114	Cricetulus_griseus_crigri
ENSSLDG00000021543	xrn1	100	79.369	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSSLDG00000021543	xrn1	71	84.704	ENSCVAG00000013089	xrn1	99	86.295	Cyprinodon_variegatus
ENSSLDG00000021543	xrn1	100	76.792	ENSDARG00000091652	xrn1	98	85.412	Danio_rerio
ENSSLDG00000021543	xrn1	100	71.724	ENSDORG00000013833	Xrn1	94	71.793	Dipodomys_ordii
ENSSLDG00000021543	xrn1	74	41.107	FBgn0020261	pcm	80	38.719	Drosophila_melanogaster
ENSSLDG00000021543	xrn1	85	69.369	ENSETEG00000003978	XRN1	83	69.421	Echinops_telfairi
ENSSLDG00000021543	xrn1	97	72.213	ENSEASG00005002687	XRN1	99	79.365	Equus_asinus_asinus
ENSSLDG00000021543	xrn1	96	72.134	ENSECAG00000008301	XRN1	94	72.134	Equus_caballus
ENSSLDG00000021543	xrn1	86	72.592	ENSEEUG00000011323	XRN1	81	72.592	Erinaceus_europaeus
ENSSLDG00000021543	xrn1	100	76.243	ENSELUG00000000169	xrn1	99	76.316	Esox_lucius
ENSSLDG00000021543	xrn1	99	67.383	ENSFCAG00000027589	XRN1	99	82.237	Felis_catus
ENSSLDG00000021543	xrn1	100	67.723	ENSFALG00000007021	XRN1	94	69.585	Ficedula_albicollis
ENSSLDG00000021543	xrn1	100	70.109	ENSFDAG00000020494	XRN1	99	79.589	Fukomys_damarensis
ENSSLDG00000021543	xrn1	91	74.938	ENSGMOG00000006396	xrn1	87	74.486	Gadus_morhua
ENSSLDG00000021543	xrn1	100	68.142	ENSGALG00000002706	XRN1	97	69.739	Gallus_gallus
ENSSLDG00000021543	xrn1	99	89.110	ENSGACG00000014328	xrn1	93	89.110	Gasterosteus_aculeatus
ENSSLDG00000021543	xrn1	95	68.548	ENSGAGG00000017535	XRN1	99	68.548	Gopherus_agassizii
ENSSLDG00000021543	xrn1	100	71.667	ENSGGOG00000008047	XRN1	96	70.584	Gorilla_gorilla
ENSSLDG00000021543	xrn1	100	86.963	ENSHBUG00000005908	xrn1	95	86.963	Haplochromis_burtoni
ENSSLDG00000021543	xrn1	99	71.508	ENSHGLG00000014476	XRN1	99	78.956	Heterocephalus_glaber_female
ENSSLDG00000021543	xrn1	99	71.508	ENSHGLG00100015130	XRN1	99	78.956	Heterocephalus_glaber_male
ENSSLDG00000021543	xrn1	95	83.211	ENSHCOG00000014062	xrn1	99	83.211	Hippocampus_comes
ENSSLDG00000021543	xrn1	100	68.805	ENSIPUG00000015229	xrn1	100	69.376	Ictalurus_punctatus
ENSSLDG00000021543	xrn1	100	71.975	ENSSTOG00000013552	XRN1	99	78.889	Ictidomys_tridecemlineatus
ENSSLDG00000021543	xrn1	97	71.185	ENSJJAG00000010863	Xrn1	99	78.418	Jaculus_jaculus
ENSSLDG00000021543	xrn1	100	82.088	ENSKMAG00000021356	xrn1	95	86.498	Kryptolebias_marmoratus
ENSSLDG00000021543	xrn1	99	87.324	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSSLDG00000021543	xrn1	99	71.216	ENSLACG00000009020	XRN1	92	71.216	Latimeria_chalumnae
ENSSLDG00000021543	xrn1	99	75.881	ENSLOCG00000007944	xrn1	99	74.652	Lepisosteus_oculatus
ENSSLDG00000021543	xrn1	67	73.371	ENSLAFG00000015426	XRN1	99	73.340	Loxodonta_africana
ENSSLDG00000021543	xrn1	97	71.815	ENSMFAG00000032599	XRN1	95	71.815	Macaca_fascicularis
ENSSLDG00000021543	xrn1	97	71.667	ENSMMUG00000014038	XRN1	95	71.815	Macaca_mulatta
ENSSLDG00000021543	xrn1	97	71.895	ENSMNEG00000034217	XRN1	95	71.895	Macaca_nemestrina
ENSSLDG00000021543	xrn1	100	84.315	ENSMAMG00000013219	xrn1	99	84.315	Mastacembelus_armatus
ENSSLDG00000021543	xrn1	99	88.732	ENSMZEG00005015099	xrn1	98	88.732	Maylandia_zebra
ENSSLDG00000021543	xrn1	99	67.559	ENSMGAG00000006333	XRN1	95	67.355	Meleagris_gallopavo
ENSSLDG00000021543	xrn1	100	70.794	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSSLDG00000021543	xrn1	61	79.022	ENSMOCG00000008665	Xrn1	99	79.239	Microtus_ochrogaster
ENSSLDG00000021543	xrn1	100	69.648	ENSMODG00000021236	XRN1	96	69.648	Monodelphis_domestica
ENSSLDG00000021543	xrn1	99	84.256	ENSMALG00000004098	xrn1	100	80.012	Monopterus_albus
ENSSLDG00000021543	xrn1	94	79.332	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSSLDG00000021543	xrn1	100	70.310	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSSLDG00000021543	xrn1	99	71.565	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSSLDG00000021543	xrn1	99	71.474	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSSLDG00000021543	xrn1	96	72.293	ENSMPUG00000012040	XRN1	94	72.293	Mustela_putorius_furo
ENSSLDG00000021543	xrn1	100	70.497	ENSMLUG00000016885	XRN1	94	70.497	Myotis_lucifugus
ENSSLDG00000021543	xrn1	61	75.197	ENSNGAG00000023964	Xrn1	99	75.277	Nannospalax_galili
ENSSLDG00000021543	xrn1	97	70.520	ENSNLEG00000004726	XRN1	96	70.661	Nomascus_leucogenys
ENSSLDG00000021543	xrn1	69	96.907	ENSMEUG00000014473	-	66	97.087	Notamacropus_eugenii
ENSSLDG00000021543	xrn1	70	68.521	ENSOPRG00000007337	-	69	68.521	Ochotona_princeps
ENSSLDG00000021543	xrn1	100	89.818	ENSONIG00000016673	xrn1	96	89.818	Oreochromis_niloticus
ENSSLDG00000021543	xrn1	90	65.862	ENSOANG00000006735	XRN1	99	64.874	Ornithorhynchus_anatinus
ENSSLDG00000021543	xrn1	99	72.351	ENSOCUG00000001861	XRN1	92	71.873	Oryctolagus_cuniculus
ENSSLDG00000021543	xrn1	100	85.873	ENSORLG00000013005	xrn1	97	85.873	Oryzias_latipes
ENSSLDG00000021543	xrn1	100	85.502	ENSORLG00020005559	xrn1	98	85.502	Oryzias_latipes_hni
ENSSLDG00000021543	xrn1	100	85.423	ENSORLG00015022523	xrn1	98	85.423	Oryzias_latipes_hsok
ENSSLDG00000021543	xrn1	100	86.453	ENSOMEG00000015397	xrn1	99	86.016	Oryzias_melastigma
ENSSLDG00000021543	xrn1	100	68.458	ENSOGAG00000000170	XRN1	95	68.405	Otolemur_garnettii
ENSSLDG00000021543	xrn1	99	71.838	ENSOARG00000006343	XRN1	95	71.838	Ovis_aries
ENSSLDG00000021543	xrn1	100	71.667	ENSPPAG00000010180	XRN1	96	70.584	Pan_paniscus
ENSSLDG00000021543	xrn1	99	72.474	ENSPPRG00000007125	XRN1	94	72.474	Panthera_pardus
ENSSLDG00000021543	xrn1	99	72.554	ENSPTIG00000021081	XRN1	94	72.554	Panthera_tigris_altaica
ENSSLDG00000021543	xrn1	100	70.520	ENSPTRG00000015482	XRN1	96	70.661	Pan_troglodytes
ENSSLDG00000021543	xrn1	100	71.667	ENSPANG00000010638	XRN1	95	71.815	Papio_anubis
ENSSLDG00000021543	xrn1	100	66.643	ENSPSIG00000018050	XRN1	98	66.643	Pelodiscus_sinensis
ENSSLDG00000021543	xrn1	61	87.580	ENSPMGG00000002648	xrn1	99	86.145	Periophthalmus_magnuspinnatus
ENSSLDG00000021543	xrn1	61	79.022	ENSPEMG00000020610	Xrn1	99	79.206	Peromyscus_maniculatus_bairdii
ENSSLDG00000021543	xrn1	70	49.579	ENSPMAG00000002975	xrn1	99	48.569	Petromyzon_marinus
ENSSLDG00000021543	xrn1	100	69.495	ENSPCIG00000028735	XRN1	99	78.855	Phascolarctos_cinereus
ENSSLDG00000021543	xrn1	91	86.385	ENSPFOG00000013932	xrn1	95	86.922	Poecilia_formosa
ENSSLDG00000021543	xrn1	90	87.028	ENSPLAG00000021653	xrn1	95	87.028	Poecilia_latipinna
ENSSLDG00000021543	xrn1	88	86.588	ENSPMEG00000003076	xrn1	91	86.824	Poecilia_mexicana
ENSSLDG00000021543	xrn1	99	85.972	ENSPREG00000021147	xrn1	96	86.520	Poecilia_reticulata
ENSSLDG00000021543	xrn1	99	71.825	ENSPPYG00000014172	XRN1	95	70.739	Pongo_abelii
ENSSLDG00000021543	xrn1	87	66.884	ENSPCAG00000005638	XRN1	91	66.721	Procavia_capensis
ENSSLDG00000021543	xrn1	100	70.483	ENSPCOG00000013089	XRN1	99	78.730	Propithecus_coquereli
ENSSLDG00000021543	xrn1	87	70.294	ENSPVAG00000016265	XRN1	87	68.739	Pteropus_vampyrus
ENSSLDG00000021543	xrn1	100	88.447	ENSPNYG00000010570	xrn1	96	88.447	Pundamilia_nyererei
ENSSLDG00000021543	xrn1	99	75.814	ENSPNAG00000023531	xrn1	95	75.873	Pygocentrus_nattereri
ENSSLDG00000021543	xrn1	100	71.383	ENSRNOG00000042951	Xrn1	93	71.383	Rattus_norvegicus
ENSSLDG00000021543	xrn1	97	71.587	ENSRBIG00000041227	XRN1	95	71.736	Rhinopithecus_bieti
ENSSLDG00000021543	xrn1	75	53.261	YGL173C	XRN1	75	53.261	Saccharomyces_cerevisiae
ENSSLDG00000021543	xrn1	100	71.667	ENSSBOG00000029561	XRN1	95	71.361	Saimiri_boliviensis_boliviensis
ENSSLDG00000021543	xrn1	98	70.669	ENSSHAG00000016207	XRN1	94	70.669	Sarcophilus_harrisii
ENSSLDG00000021543	xrn1	99	76.434	ENSSFOG00015024211	xrn1	100	68.042	Scleropages_formosus
ENSSLDG00000021543	xrn1	100	89.428	ENSSMAG00000016534	xrn1	100	86.078	Scophthalmus_maximus
ENSSLDG00000021543	xrn1	100	89.082	ENSSDUG00000010306	xrn1	98	98.044	Seriola_dumerili
ENSSLDG00000021543	xrn1	65	67.559	ENSSARG00000007741	-	75	67.662	Sorex_araneus
ENSSLDG00000021543	xrn1	100	69.266	ENSTGUG00000008498	XRN1	97	68.370	Taeniopygia_guttata
ENSSLDG00000021543	xrn1	100	83.596	ENSTRUG00000004895	xrn1	96	86.966	Takifugu_rubripes
ENSSLDG00000021543	xrn1	99	82.650	ENSTNIG00000017615	xrn1	92	82.399	Tetraodon_nigroviridis
ENSSLDG00000021543	xrn1	85	85.484	ENSTBEG00000003256	XRN1	79	83.418	Tupaia_belangeri
ENSSLDG00000021543	xrn1	99	69.745	ENSTTRG00000012914	XRN1	94	69.745	Tursiops_truncatus
ENSSLDG00000021543	xrn1	96	70.143	ENSUAMG00000001608	XRN1	99	75.556	Ursus_americanus
ENSSLDG00000021543	xrn1	96	71.975	ENSUMAG00000013625	XRN1	94	71.975	Ursus_maritimus
ENSSLDG00000021543	xrn1	100	68.302	ENSVPAG00000004690	XRN1	95	68.302	Vicugna_pacos
ENSSLDG00000021543	xrn1	96	72.452	ENSVVUG00000024461	XRN1	99	79.524	Vulpes_vulpes
ENSSLDG00000021543	xrn1	99	71.463	ENSXETG00000000619	xrn1	99	86.089	Xenopus_tropicalis
ENSSLDG00000021543	xrn1	100	77.582	ENSXCOG00000007917	xrn1	100	78.015	Xiphophorus_couchianus
ENSSLDG00000021543	xrn1	100	80.607	ENSXMAG00000018320	xrn1	100	84.105	Xiphophorus_maculatus