EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000021973 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 14026 bases
Position: chrPEQF01099365.1:1672690-1686715
Accession: 111671809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000028434	zf-C2H2	PF00096.26	6.8e-19	1	3
ENSSLDP00000028434	zf-C2H2	PF00096.26	6.8e-19	2	3
ENSSLDP00000028434	zf-C2H2	PF00096.26	6.8e-19	3	3
ENSSLDP00000028405	zf-C2H2	PF00096.26	1.7e-18	1	3
ENSSLDP00000028405	zf-C2H2	PF00096.26	1.7e-18	2	3
ENSSLDP00000028405	zf-C2H2	PF00096.26	1.7e-18	3	3
ENSSLDP00000028434	zf-met	PF12874.7	1.5e-05	1	1
ENSSLDP00000028405	zf-met	PF12874.7	3.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000029248	-	4437	XM_023429015	ENSSLDP00000028405	719 (aa)	XP_023284783	UPI000C6F96AE
ENSSLDT00000029278	-	1833	-	ENSSLDP00000028434	610 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000021973's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000021973's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000021973	prdm1b	51	36.620	ENSSLDG00000004428	PRDM15	59	33.588
ENSSLDG00000021973	prdm1b	54	67.143	ENSSLDG00000001957	-	53	58.282
ENSSLDG00000021973	prdm1b	50	41.935	ENSSLDG00000011849	-	79	39.437

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000021973	prdm1b	88	40.230	ENSAPOG00000014135	-	86	40.230	Acanthochromis_polyacanthus
ENSSLDG00000021973	prdm1b	72	74.550	ENSAPOG00000022084	prdm1b	95	74.236	Acanthochromis_polyacanthus
ENSSLDG00000021973	prdm1b	98	80.858	ENSACIG00000014426	prdm1b	97	80.858	Amphilophus_citrinellus
ENSSLDG00000021973	prdm1b	58	64.286	ENSACIG00000009747	-	79	37.481	Amphilophus_citrinellus
ENSSLDG00000021973	prdm1b	96	77.066	ENSAOCG00000002230	prdm1b	99	77.234	Amphiprion_ocellaris
ENSSLDG00000021973	prdm1b	100	78.532	ENSAPEG00000019826	prdm1b	100	78.670	Amphiprion_percula
ENSSLDG00000021973	prdm1b	76	64.286	ENSATEG00000014034	-	74	57.055	Anabas_testudineus
ENSSLDG00000021973	prdm1b	71	61.972	ENSATEG00000021017	prdm1a	73	55.682	Anabas_testudineus
ENSSLDG00000021973	prdm1b	99	89.091	ENSATEG00000006924	prdm1b	99	89.440	Anabas_testudineus
ENSSLDG00000021973	prdm1b	94	85.043	ENSACLG00000005487	prdm1b	89	85.043	Astatotilapia_calliptera
ENSSLDG00000021973	prdm1b	69	60.563	ENSCSEG00000009707	prdm1a	73	54.802	Cynoglossus_semilaevis
ENSSLDG00000021973	prdm1b	56	63.380	ENSCVAG00000019081	prdm1a	73	55.429	Cyprinodon_variegatus
ENSSLDG00000021973	prdm1b	100	79.530	ENSCVAG00000016746	prdm1b	100	79.806	Cyprinodon_variegatus
ENSSLDG00000021973	prdm1b	99	78.748	ENSFHEG00000019848	prdm1b	99	79.006	Fundulus_heteroclitus
ENSSLDG00000021973	prdm1b	98	79.350	ENSGAFG00000016191	prdm1b	97	79.512	Gambusia_affinis
ENSSLDG00000021973	prdm1b	51	67.143	ENSGAFG00000013012	-	54	56.442	Gambusia_affinis
ENSSLDG00000021973	prdm1b	93	76.620	ENSGACG00000002716	prdm1b	100	76.620	Gasterosteus_aculeatus
ENSSLDG00000021973	prdm1b	94	85.217	ENSHBUG00000001475	prdm1b	95	85.217	Haplochromis_burtoni
ENSSLDG00000021973	prdm1b	99	75.941	ENSHCOG00000003617	prdm1b	99	76.518	Hippocampus_comes
ENSSLDG00000021973	prdm1b	87	72.674	ENSIPUG00000013740	prdm1b	82	72.674	Ictalurus_punctatus
ENSSLDG00000021973	prdm1b	88	40.942	ENSKMAG00000016247	-	86	40.942	Kryptolebias_marmoratus
ENSSLDG00000021973	prdm1b	75	63.380	ENSKMAG00000017597	prdm1a	68	63.380	Kryptolebias_marmoratus
ENSSLDG00000021973	prdm1b	93	75.657	ENSKMAG00000011218	prdm1b	90	75.657	Kryptolebias_marmoratus
ENSSLDG00000021973	prdm1b	100	89.073	ENSLBEG00000020955	prdm1b	100	89.073	Labrus_bergylta
ENSSLDG00000021973	prdm1b	84	75.000	ENSLOCG00000004978	prdm1b	79	75.000	Lepisosteus_oculatus
ENSSLDG00000021973	prdm1b	99	82.781	ENSMZEG00005026361	prdm1b	95	82.035	Maylandia_zebra
ENSSLDG00000021973	prdm1b	94	85.640	ENSMMOG00000013458	prdm1b	95	85.640	Mola_mola
ENSSLDG00000021973	prdm1b	99	81.188	ENSMALG00000011410	prdm1b	99	81.353	Monopterus_albus
ENSSLDG00000021973	prdm1b	55	62.857	ENSMALG00000000462	-	55	57.669	Monopterus_albus
ENSSLDG00000021973	prdm1b	91	92.771	ENSONIG00000013583	prdm1b	100	68.947	Oreochromis_niloticus
ENSSLDG00000021973	prdm1b	54	57.669	ENSONIG00000014709	-	55	57.669	Oreochromis_niloticus
ENSSLDG00000021973	prdm1b	95	70.364	ENSORLG00000010025	prdm1b	99	68.847	Oryzias_latipes
ENSSLDG00000021973	prdm1b	92	70.869	ENSORLG00015009022	prdm1b	92	71.235	Oryzias_latipes_hsok
ENSSLDG00000021973	prdm1b	99	51.179	ENSPKIG00000022335	prdm1b	97	50.417	Paramormyrops_kingsleyae
ENSSLDG00000021973	prdm1b	88	73.547	ENSPFOG00000003103	prdm1b	100	73.547	Poecilia_formosa
ENSSLDG00000021973	prdm1b	99	80.844	ENSPLAG00000018491	prdm1b	99	81.558	Poecilia_latipinna
ENSSLDG00000021973	prdm1b	99	82.237	ENSPMEG00000007869	prdm1b	99	82.880	Poecilia_mexicana
ENSSLDG00000021973	prdm1b	99	80.614	ENSPREG00000011327	prdm1b	99	81.359	Poecilia_reticulata
ENSSLDG00000021973	prdm1b	74	60.465	ENSPVAG00000011732	PRDM1	94	41.276	Pteropus_vampyrus
ENSSLDG00000021973	prdm1b	91	43.822	ENSPNAG00000028442	prdm1a	88	43.822	Pygocentrus_nattereri
ENSSLDG00000021973	prdm1b	92	63.636	ENSSFOG00015021896	prdm1b	92	63.636	Scleropages_formosus
ENSSLDG00000021973	prdm1b	92	38.462	ENSSMAG00000017518	-	90	39.101	Scophthalmus_maximus
ENSSLDG00000021973	prdm1b	100	88.072	ENSSMAG00000020467	prdm1b	100	88.072	Scophthalmus_maximus
ENSSLDG00000021973	prdm1b	99	96.880	ENSSDUG00000020610	prdm1b	99	99.035	Seriola_dumerili
ENSSLDG00000021973	prdm1b	54	68.571	ENSSDUG00000000524	-	53	58.896	Seriola_dumerili
ENSSLDG00000021973	prdm1b	99	81.054	ENSSPAG00000000803	prdm1b	99	82.051	Stegastes_partitus
ENSSLDG00000021973	prdm1b	88	40.000	ENSSPAG00000009830	-	86	40.000	Stegastes_partitus
ENSSLDG00000021973	prdm1b	96	82.225	ENSXCOG00000018920	prdm1b	98	82.225	Xiphophorus_couchianus
ENSSLDG00000021973	prdm1b	100	77.069	ENSXMAG00000016765	prdm1b	97	78.188	Xiphophorus_maculatus