EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000022024 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 16541 bases
Position: chrPEQF01099169.1:140268-156808
Accession: 111667513
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000028493	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSSLDP00000028502	MMR_HSR1	PF01926.23	1.7e-08	1	1
ENSSLDP00000028514	MMR_HSR1	PF01926.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000029359	-	1392	-	ENSSLDP00000028514	463 (aa)	-	-
ENSSLDT00000029345	-	4939	XM_023423239	ENSSLDP00000028502	470 (aa)	XP_023279007	UPI000BBE4DA3
ENSSLDT00000029335	-	4975	XM_023423238	ENSSLDP00000028493	482 (aa)	XP_023279006	UPI000C6F5BA0

Gene Model

Click here to download ENSSLDG00000022024's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000022024's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000022024	srl	80	32.976	ENSSLDG00000025510	ehd3	69	33.247
ENSSLDG00000022024	srl	53	37.959	ENSSLDG00000008515	-	54	34.899
ENSSLDG00000022024	srl	96	77.074	ENSSLDG00000014601	SRL	100	77.632
ENSSLDG00000022024	srl	84	32.474	ENSSLDG00000015328	ehd1a	70	32.474
ENSSLDG00000022024	srl	86	32.010	ENSSLDG00000020986	ehd4	71	32.010
ENSSLDG00000022024	srl	88	33.007	ENSSLDG00000005368	ehd2b	74	33.007

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000022024	srl	95	83.484	ENSG00000185739	SRL	99	83.953	Homo_sapiens
ENSSLDG00000022024	srl	96	77.201	ENSAPOG00000012432	SRL	99	77.201	Acanthochromis_polyacanthus
ENSSLDG00000022024	srl	100	96.603	ENSAPOG00000018093	srl	100	96.603	Acanthochromis_polyacanthus
ENSSLDG00000022024	srl	97	81.441	ENSAMEG00000010862	SRL	50	83.258	Ailuropoda_melanoleuca
ENSSLDG00000022024	srl	97	96.659	ENSACIG00000015799	srl	99	96.889	Amphilophus_citrinellus
ENSSLDG00000022024	srl	97	75.670	ENSACIG00000015419	SRL	99	75.670	Amphilophus_citrinellus
ENSSLDG00000022024	srl	96	77.477	ENSAOCG00000017049	SRL	97	77.703	Amphiprion_ocellaris
ENSSLDG00000022024	srl	94	97.696	ENSAOCG00000007574	srl	100	97.696	Amphiprion_ocellaris
ENSSLDG00000022024	srl	96	73.363	ENSAPEG00000006533	SRL	96	74.550	Amphiprion_percula
ENSSLDG00000022024	srl	100	96.894	ENSAPEG00000006911	srl	100	96.894	Amphiprion_percula
ENSSLDG00000022024	srl	96	76.535	ENSATEG00000009643	SRL	52	76.754	Anabas_testudineus
ENSSLDG00000022024	srl	100	96.273	ENSATEG00000024315	srl	100	96.273	Anabas_testudineus
ENSSLDG00000022024	srl	100	81.967	ENSACAG00000016380	SRL	85	84.233	Anolis_carolinensis
ENSSLDG00000022024	srl	97	74.620	ENSACLG00000024674	SRL	54	78.250	Astatotilapia_calliptera
ENSSLDG00000022024	srl	100	96.273	ENSACLG00000027685	srl	100	94.813	Astatotilapia_calliptera
ENSSLDG00000022024	srl	99	91.268	ENSAMXG00000018789	srl	89	92.473	Astyanax_mexicanus
ENSSLDG00000022024	srl	91	77.381	ENSAMXG00000038693	SRL	100	73.510	Astyanax_mexicanus
ENSSLDG00000022024	srl	95	83.900	ENSBTAG00000001078	SRL	56	83.900	Bos_taurus
ENSSLDG00000022024	srl	95	83.484	ENSCJAG00000019750	SRL	95	82.262	Callithrix_jacchus
ENSSLDG00000022024	srl	98	81.579	ENSCAFG00000019233	SRL	85	81.579	Canis_familiaris
ENSSLDG00000022024	srl	95	83.258	ENSCAFG00020025024	SRL	56	82.119	Canis_lupus_dingo
ENSSLDG00000022024	srl	97	82.096	ENSCHIG00000017927	SRL	57	82.340	Capra_hircus
ENSSLDG00000022024	srl	100	80.338	ENSTSYG00000007919	SRL	99	84.651	Carlito_syrichta
ENSSLDG00000022024	srl	95	83.710	ENSCPOG00000012643	SRL	96	82.561	Cavia_porcellus
ENSSLDG00000022024	srl	95	78.054	ENSCCAG00000032646	SRL	100	85.224	Cebus_capucinus
ENSSLDG00000022024	srl	95	83.484	ENSCATG00000032227	-	93	83.484	Cercocebus_atys
ENSSLDG00000022024	srl	95	83.937	ENSCLAG00000016242	SRL	96	82.781	Chinchilla_lanigera
ENSSLDG00000022024	srl	83	86.753	ENSCHOG00000001618	SRL	52	86.753	Choloepus_hoffmanni
ENSSLDG00000022024	srl	96	86.269	ENSCPBG00000026371	SRL	96	82.366	Chrysemys_picta_bellii
ENSSLDG00000022024	srl	94	58.145	ENSCING00000005231	-	95	58.879	Ciona_intestinalis
ENSSLDG00000022024	srl	95	83.484	ENSCANG00000035872	SRL	99	83.953	Colobus_angolensis_palliatus
ENSSLDG00000022024	srl	95	84.615	ENSCGRG00001016630	Srl	96	83.444	Cricetulus_griseus_chok1gshd
ENSSLDG00000022024	srl	95	84.615	ENSCGRG00000005458	Srl	96	83.444	Cricetulus_griseus_crigri
ENSSLDG00000022024	srl	99	72.495	ENSCSEG00000011866	SRL	89	75.676	Cynoglossus_semilaevis
ENSSLDG00000022024	srl	100	95.319	ENSCSEG00000016151	srl	100	95.319	Cynoglossus_semilaevis
ENSSLDG00000022024	srl	97	76.419	ENSCVAG00000022465	SRL	61	76.419	Cyprinodon_variegatus
ENSSLDG00000022024	srl	100	95.021	ENSCVAG00000003513	srl	100	95.021	Cyprinodon_variegatus
ENSSLDG00000022024	srl	100	91.511	ENSDARG00000104587	srl	97	92.918	Danio_rerio
ENSSLDG00000022024	srl	82	78.906	ENSDARG00000112959	CABZ01072309.1	100	78.906	Danio_rerio
ENSSLDG00000022024	srl	97	82.667	ENSDNOG00000011643	SRL	54	82.667	Dasypus_novemcinctus
ENSSLDG00000022024	srl	97	83.040	ENSDORG00000014807	Srl	96	83.040	Dipodomys_ordii
ENSSLDG00000022024	srl	80	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSSLDG00000022024	srl	95	83.900	ENSEASG00005000942	SRL	55	82.340	Equus_asinus_asinus
ENSSLDG00000022024	srl	99	80.932	ENSECAG00000024219	SRL	96	82.561	Equus_caballus
ENSSLDG00000022024	srl	100	87.474	ENSELUG00000015616	srl	100	87.474	Esox_lucius
ENSSLDG00000022024	srl	100	79.915	ENSFCAG00000022075	SRL	96	81.718	Felis_catus
ENSSLDG00000022024	srl	95	83.864	ENSFALG00000004328	SRL	63	83.864	Ficedula_albicollis
ENSSLDG00000022024	srl	95	84.615	ENSFDAG00000006199	SRL	96	83.444	Fukomys_damarensis
ENSSLDG00000022024	srl	100	73.967	ENSFHEG00000011854	SRL	99	77.354	Fundulus_heteroclitus
ENSSLDG00000022024	srl	100	94.813	ENSFHEG00000011239	srl	100	94.813	Fundulus_heteroclitus
ENSSLDG00000022024	srl	94	92.070	ENSGMOG00000014954	srl	100	92.070	Gadus_morhua
ENSSLDG00000022024	srl	99	81.104	ENSGALG00000038884	SRL	96	82.599	Gallus_gallus
ENSSLDG00000022024	srl	97	78.571	ENSGAFG00000016984	SRL	100	78.396	Gambusia_affinis
ENSSLDG00000022024	srl	100	95.021	ENSGAFG00000000010	srl	100	95.021	Gambusia_affinis
ENSSLDG00000022024	srl	94	96.923	ENSGACG00000011332	srl	100	96.923	Gasterosteus_aculeatus
ENSSLDG00000022024	srl	95	83.484	ENSGGOG00000011312	-	93	83.484	Gorilla_gorilla
ENSSLDG00000022024	srl	100	96.273	ENSHBUG00000007581	srl	100	94.813	Haplochromis_burtoni
ENSSLDG00000022024	srl	97	75.054	ENSHBUG00000015710	SRL	58	74.573	Haplochromis_burtoni
ENSSLDG00000022024	srl	95	84.389	ENSHGLG00000015271	SRL	96	83.223	Heterocephalus_glaber_female
ENSSLDG00000022024	srl	95	84.389	ENSHGLG00100019378	SRL	96	83.223	Heterocephalus_glaber_male
ENSSLDG00000022024	srl	96	75.165	ENSHCOG00000001012	SRL	50	75.165	Hippocampus_comes
ENSSLDG00000022024	srl	100	95.975	ENSHCOG00000008687	srl	99	96.875	Hippocampus_comes
ENSSLDG00000022024	srl	94	69.954	ENSIPUG00000011609	SRL	95	69.954	Ictalurus_punctatus
ENSSLDG00000022024	srl	100	90.476	ENSIPUG00000012513	srl	97	91.372	Ictalurus_punctatus
ENSSLDG00000022024	srl	95	84.163	ENSSTOG00000021151	-	96	82.781	Ictidomys_tridecemlineatus
ENSSLDG00000022024	srl	100	82.203	ENSJJAG00000016400	Srl	96	83.664	Jaculus_jaculus
ENSSLDG00000022024	srl	95	76.871	ENSKMAG00000019537	SRL	100	76.871	Kryptolebias_marmoratus
ENSSLDG00000022024	srl	98	95.551	ENSKMAG00000014115	srl	95	95.551	Kryptolebias_marmoratus
ENSSLDG00000022024	srl	100	96.178	ENSLBEG00000026643	srl	100	96.178	Labrus_bergylta
ENSSLDG00000022024	srl	95	76.018	ENSLBEG00000013811	SRL	95	76.244	Labrus_bergylta
ENSSLDG00000022024	srl	100	82.402	ENSLACG00000002825	SRL	99	84.187	Latimeria_chalumnae
ENSSLDG00000022024	srl	99	87.905	ENSLOCG00000002644	srl	96	89.087	Lepisosteus_oculatus
ENSSLDG00000022024	srl	95	83.258	ENSLAFG00000006329	SRL	50	83.258	Loxodonta_africana
ENSSLDG00000022024	srl	93	83.953	ENSMFAG00000037383	SRL	99	83.953	Macaca_fascicularis
ENSSLDG00000022024	srl	95	83.484	ENSMNEG00000019236	-	93	83.484	Macaca_nemestrina
ENSSLDG00000022024	srl	95	76.471	ENSMLEG00000032156	SRL	89	83.632	Mandrillus_leucophaeus
ENSSLDG00000022024	srl	95	75.551	ENSMAMG00000013756	SRL	53	75.551	Mastacembelus_armatus
ENSSLDG00000022024	srl	99	94.004	ENSMAMG00000023322	srl	96	96.460	Mastacembelus_armatus
ENSSLDG00000022024	srl	97	74.837	ENSMZEG00005004010	SRL	59	74.359	Maylandia_zebra
ENSSLDG00000022024	srl	100	96.273	ENSMZEG00005004548	srl	100	94.813	Maylandia_zebra
ENSSLDG00000022024	srl	95	84.091	ENSMGAG00000009342	SRL	92	86.027	Meleagris_gallopavo
ENSSLDG00000022024	srl	96	83.747	ENSMICG00000032307	SRL	96	82.379	Microcebus_murinus
ENSSLDG00000022024	srl	99	81.957	ENSMOCG00000008208	Srl	96	82.781	Microtus_ochrogaster
ENSSLDG00000022024	srl	97	95.100	ENSMMOG00000013970	srl	100	95.333	Mola_mola
ENSSLDG00000022024	srl	95	74.505	ENSMMOG00000021572	SRL	99	74.725	Mola_mola
ENSSLDG00000022024	srl	97	83.929	ENSMODG00000016380	-	51	83.778	Monodelphis_domestica
ENSSLDG00000022024	srl	90	77.804	ENSMALG00000000670	SRL	98	77.804	Monopterus_albus
ENSSLDG00000022024	srl	100	95.106	ENSMALG00000005039	srl	100	95.106	Monopterus_albus
ENSSLDG00000022024	srl	97	83.700	MGP_CAROLIEiJ_G0020400	Srl	96	83.700	Mus_caroli
ENSSLDG00000022024	srl	97	83.700	ENSMUSG00000022519	Srl	96	83.700	Mus_musculus
ENSSLDG00000022024	srl	97	83.700	MGP_SPRETEiJ_G0021294	Srl	96	83.700	Mus_spretus
ENSSLDG00000022024	srl	95	83.258	ENSMPUG00000015025	SRL	54	83.258	Mustela_putorius_furo
ENSSLDG00000022024	srl	99	81.562	ENSMLUG00000030733	SRL	56	84.163	Myotis_lucifugus
ENSSLDG00000022024	srl	97	83.480	ENSNGAG00000019741	Srl	96	83.480	Nannospalax_galili
ENSSLDG00000022024	srl	97	74.187	ENSNBRG00000002422	SRL	56	76.389	Neolamprologus_brichardi
ENSSLDG00000022024	srl	100	96.178	ENSNBRG00000023775	srl	100	94.681	Neolamprologus_brichardi
ENSSLDG00000022024	srl	95	77.828	ENSNLEG00000029051	SRL	89	85.166	Nomascus_leucogenys
ENSSLDG00000022024	srl	98	75.983	ENSOPRG00000000477	-	52	77.828	Ochotona_princeps
ENSSLDG00000022024	srl	97	82.819	ENSODEG00000013256	SRL	96	82.819	Octodon_degus
ENSSLDG00000022024	srl	100	96.273	ENSONIG00000005192	srl	100	94.813	Oreochromis_niloticus
ENSSLDG00000022024	srl	100	95.851	ENSORLG00000008291	srl	97	95.851	Oryzias_latipes
ENSSLDG00000022024	srl	96	74.775	ENSORLG00000015064	SRL	97	74.944	Oryzias_latipes
ENSSLDG00000022024	srl	100	96.266	ENSORLG00020019784	srl	85	96.266	Oryzias_latipes_hni
ENSSLDG00000022024	srl	96	75.000	ENSORLG00020018173	SRL	97	75.169	Oryzias_latipes_hni
ENSSLDG00000022024	srl	100	95.851	ENSORLG00015009342	srl	97	95.851	Oryzias_latipes_hsok
ENSSLDG00000022024	srl	96	75.169	ENSORLG00015019063	SRL	97	75.169	Oryzias_latipes_hsok
ENSSLDG00000022024	srl	96	73.684	ENSOMEG00000005682	SRL	53	73.961	Oryzias_melastigma
ENSSLDG00000022024	srl	100	95.643	ENSOMEG00000010006	srl	100	95.643	Oryzias_melastigma
ENSSLDG00000022024	srl	96	82.883	ENSOGAG00000029266	SRL	55	82.080	Otolemur_garnettii
ENSSLDG00000022024	srl	97	82.096	ENSOARG00000003074	SRL	57	82.705	Ovis_aries
ENSSLDG00000022024	srl	95	83.484	ENSPPAG00000024919	-	99	83.953	Pan_paniscus
ENSSLDG00000022024	srl	100	79.915	ENSPPRG00000010274	SRL	99	83.721	Panthera_pardus
ENSSLDG00000022024	srl	100	79.915	ENSPTIG00000015162	SRL	99	83.721	Panthera_tigris_altaica
ENSSLDG00000022024	srl	95	83.484	ENSPTRG00000007712	SRL	99	83.953	Pan_troglodytes
ENSSLDG00000022024	srl	97	81.878	ENSPANG00000013804	SRL	98	81.978	Papio_anubis
ENSSLDG00000022024	srl	100	90.103	ENSPKIG00000006405	srl	97	90.832	Paramormyrops_kingsleyae
ENSSLDG00000022024	srl	100	78.344	ENSPKIG00000024974	SRL	91	79.780	Paramormyrops_kingsleyae
ENSSLDG00000022024	srl	96	82.844	ENSPSIG00000008586	SRL	50	82.844	Pelodiscus_sinensis
ENSSLDG00000022024	srl	96	75.395	ENSPMGG00000023505	-	99	75.566	Periophthalmus_magnuspinnatus
ENSSLDG00000022024	srl	97	94.209	ENSPMGG00000021081	srl	97	93.805	Periophthalmus_magnuspinnatus
ENSSLDG00000022024	srl	95	84.163	ENSPEMG00000015842	Srl	96	83.002	Peromyscus_maniculatus_bairdii
ENSSLDG00000022024	srl	91	67.661	ENSPMAG00000004786	srl	99	68.192	Petromyzon_marinus
ENSSLDG00000022024	srl	95	84.354	ENSPCIG00000012128	SRL	98	83.333	Phascolarctos_cinereus
ENSSLDG00000022024	srl	100	95.228	ENSPFOG00000011408	srl	96	95.259	Poecilia_formosa
ENSSLDG00000022024	srl	99	94.336	ENSPLAG00000008017	srl	98	95.778	Poecilia_latipinna
ENSSLDG00000022024	srl	97	77.232	ENSPLAG00000002932	SRL	100	77.060	Poecilia_latipinna
ENSSLDG00000022024	srl	97	75.705	ENSPMEG00000005890	SRL	61	75.162	Poecilia_mexicana
ENSSLDG00000022024	srl	100	95.106	ENSPMEG00000006745	srl	98	95.778	Poecilia_mexicana
ENSSLDG00000022024	srl	100	95.228	ENSPREG00000007751	srl	100	95.787	Poecilia_reticulata
ENSSLDG00000022024	srl	97	77.951	ENSPREG00000000315	SRL	100	78.174	Poecilia_reticulata
ENSSLDG00000022024	srl	90	85.442	ENSPPYG00000007053	SRL	98	85.442	Pongo_abelii
ENSSLDG00000022024	srl	95	84.354	ENSPCAG00000003378	-	50	84.354	Procavia_capensis
ENSSLDG00000022024	srl	96	83.747	ENSPCOG00000023135	SRL	99	84.651	Propithecus_coquereli
ENSSLDG00000022024	srl	95	83.937	ENSPVAG00000006586	SRL	56	82.743	Pteropus_vampyrus
ENSSLDG00000022024	srl	100	96.066	ENSPNYG00000001200	srl	100	94.606	Pundamilia_nyererei
ENSSLDG00000022024	srl	97	74.837	ENSPNYG00000003423	SRL	58	74.359	Pundamilia_nyererei
ENSSLDG00000022024	srl	95	75.737	ENSPNAG00000007361	-	91	75.737	Pygocentrus_nattereri
ENSSLDG00000022024	srl	100	91.286	ENSPNAG00000023106	srl	97	92.489	Pygocentrus_nattereri
ENSSLDG00000022024	srl	95	84.615	ENSRNOG00000005269	Srl	50	83.040	Rattus_norvegicus
ENSSLDG00000022024	srl	95	83.484	ENSRBIG00000042358	SRL	50	81.718	Rhinopithecus_bieti
ENSSLDG00000022024	srl	95	83.484	ENSSBOG00000029273	SRL	95	82.262	Saimiri_boliviensis_boliviensis
ENSSLDG00000022024	srl	97	83.705	ENSSHAG00000011715	-	51	83.556	Sarcophilus_harrisii
ENSSLDG00000022024	srl	100	90.496	ENSSFOG00015009773	srl	97	91.453	Scleropages_formosus
ENSSLDG00000022024	srl	96	77.354	ENSSFOG00015021327	SRL	50	77.232	Scleropages_formosus
ENSSLDG00000022024	srl	95	74.945	ENSSMAG00000002232	SRL	50	74.945	Scophthalmus_maximus
ENSSLDG00000022024	srl	100	94.904	ENSSMAG00000016274	srl	100	94.904	Scophthalmus_maximus
ENSSLDG00000022024	srl	96	77.333	ENSSDUG00000009161	SRL	99	77.333	Seriola_dumerili
ENSSLDG00000022024	srl	96	100.000	ENSSDUG00000010808	srl	98	100.000	Seriola_dumerili
ENSSLDG00000022024	srl	96	83.146	ENSSPUG00000016859	SRL	98	83.146	Sphenodon_punctatus
ENSSLDG00000022024	srl	95	78.912	ENSSPAG00000014254	SRL	98	78.912	Stegastes_partitus
ENSSLDG00000022024	srl	100	96.694	ENSSPAG00000019105	srl	100	96.694	Stegastes_partitus
ENSSLDG00000022024	srl	95	83.673	ENSSSCG00000007949	SRL	98	83.673	Sus_scrofa
ENSSLDG00000022024	srl	95	84.091	ENSTGUG00000003951	-	97	84.091	Taeniopygia_guttata
ENSSLDG00000022024	srl	78	86.740	ENSTGUG00000016121	-	100	86.740	Taeniopygia_guttata
ENSSLDG00000022024	srl	100	95.319	ENSTRUG00000006005	srl	100	95.319	Takifugu_rubripes
ENSSLDG00000022024	srl	90	78.520	ENSTRUG00000013310	SRL	55	78.520	Takifugu_rubripes
ENSSLDG00000022024	srl	100	94.894	ENSTNIG00000009739	srl	100	94.894	Tetraodon_nigroviridis
ENSSLDG00000022024	srl	95	83.258	ENSUAMG00000005701	SRL	55	83.258	Ursus_americanus
ENSSLDG00000022024	srl	95	83.258	ENSUMAG00000002574	SRL	55	83.258	Ursus_maritimus
ENSSLDG00000022024	srl	97	81.400	ENSVVUG00000016331	-	50	81.400	Vulpes_vulpes
ENSSLDG00000022024	srl	97	82.183	ENSXETG00000017313	srl	99	82.183	Xenopus_tropicalis
ENSSLDG00000022024	srl	91	95.962	ENSXCOG00000010424	srl	97	95.962	Xiphophorus_couchianus
ENSSLDG00000022024	srl	97	78.348	ENSXCOG00000014584	SRL	100	78.049	Xiphophorus_couchianus
ENSSLDG00000022024	srl	100	95.021	ENSXMAG00000004625	srl	95	95.021	Xiphophorus_maculatus
ENSSLDG00000022024	srl	97	75.922	ENSXMAG00000027598	SRL	63	75.922	Xiphophorus_maculatus