EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000023195 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: RB binding protein 6%2C ubiquitin ligase
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Plus strand
Length: 13826 bases
Position: chrPEQF01099053.1:877238-891063
Accession: 111663302
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000030114	zf-CCHC_2	PF13696.6	7.1e-09	1	1
ENSSLDP00000030086	zf-CCHC_2	PF13696.6	5.8e-08	1	1
ENSSLDP00000030114	zf-CCHC	PF00098.23	8.6e-06	1	1
ENSSLDP00000030086	zf-CCHC	PF00098.23	0.00036	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000030985	-	717	-	ENSSLDP00000030114	238 (aa)	-	-
ENSSLDT00000030958	-	6845	XM_023417467	ENSSLDP00000030086	1453 (aa)	XP_023273235	-

Gene Model

Click here to download ENSSLDG00000023195's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000023195's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000023195	-	84	64.390	ENSSLDG00000016974	-	99	64.390

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000023195	-	84	64.216	ENSAPOG00000015723	-	98	64.216	Acanthochromis_polyacanthus
ENSSLDG00000023195	-	91	90.090	ENSAPOG00000001357	-	82	80.357	Acanthochromis_polyacanthus
ENSSLDG00000023195	-	77	92.935	ENSACIG00000015080	-	82	92.935	Amphilophus_citrinellus
ENSSLDG00000023195	-	84	64.216	ENSAOCG00000023269	-	93	64.216	Amphiprion_ocellaris
ENSSLDG00000023195	-	88	61.751	ENSATEG00000003539	-	97	61.751	Anabas_testudineus
ENSSLDG00000023195	-	95	90.086	ENSACLG00000000316	-	86	72.841	Astatotilapia_calliptera
ENSSLDG00000023195	-	84	59.809	ENSACLG00000010235	-	94	58.173	Astatotilapia_calliptera
ENSSLDG00000023195	-	84	51.429	ENSCSAVG00000002639	-	90	53.333	Ciona_savignyi
ENSSLDG00000023195	-	81	70.297	ENSCSEG00000015861	-	86	71.287	Cynoglossus_semilaevis
ENSSLDG00000023195	-	76	80.874	ENSELUG00000017972	-	88	80.874	Esox_lucius
ENSSLDG00000023195	-	84	60.784	ENSFHEG00000004408	-	89	60.784	Fundulus_heteroclitus
ENSSLDG00000023195	-	88	58.559	ENSGMOG00000004819	-	90	58.636	Gadus_morhua
ENSSLDG00000023195	-	90	86.111	ENSGMOG00000006417	-	99	86.111	Gadus_morhua
ENSSLDG00000023195	-	91	86.937	ENSGAFG00000002762	-	61	86.861	Gambusia_affinis
ENSSLDG00000023195	-	93	91.031	ENSGACG00000016781	-	94	91.031	Gasterosteus_aculeatus
ENSSLDG00000023195	-	91	90.541	ENSHBUG00000019761	-	82	75.268	Haplochromis_burtoni
ENSSLDG00000023195	-	83	62.687	ENSHCOG00000015620	-	96	62.687	Hippocampus_comes
ENSSLDG00000023195	-	98	80.769	ENSLBEG00000004625	-	83	80.769	Labrus_bergylta
ENSSLDG00000023195	-	84	62.136	ENSMAMG00000004136	-	99	62.136	Mastacembelus_armatus
ENSSLDG00000023195	-	85	91.584	ENSMAMG00000009045	-	87	94.030	Mastacembelus_armatus
ENSSLDG00000023195	-	84	59.809	ENSMZEG00005007792	-	94	58.173	Maylandia_zebra
ENSSLDG00000023195	-	91	90.541	ENSMZEG00005011490	rbbp6	82	74.178	Maylandia_zebra
ENSSLDG00000023195	-	90	58.036	ENSMMOG00000012378	-	93	58.036	Mola_mola
ENSSLDG00000023195	-	94	84.375	ENSMMOG00000003895	-	91	84.375	Mola_mola
ENSSLDG00000023195	-	87	65.072	ENSMALG00000018253	-	84	63.850	Monopterus_albus
ENSSLDG00000023195	-	95	90.517	ENSNBRG00000007660	-	82	78.311	Neolamprologus_brichardi
ENSSLDG00000023195	-	91	89.189	ENSONIG00000003324	rbbp6	100	77.955	Oreochromis_niloticus
ENSSLDG00000023195	-	93	59.375	ENSONIG00000015704	-	95	58.482	Oreochromis_niloticus
ENSSLDG00000023195	-	84	62.562	ENSORLG00015021920	-	95	62.745	Oryzias_latipes_hsok
ENSSLDG00000023195	-	85	62.136	ENSOMEG00000020721	-	81	62.319	Oryzias_melastigma
ENSSLDG00000023195	-	92	89.732	ENSPMGG00000002101	-	96	89.732	Periophthalmus_magnuspinnatus
ENSSLDG00000023195	-	90	64.516	ENSPMAG00000009464	-	91	63.927	Petromyzon_marinus
ENSSLDG00000023195	-	96	83.898	ENSPFOG00000022154	-	69	82.909	Poecilia_formosa
ENSSLDG00000023195	-	94	90.789	ENSPNYG00000014384	-	94	90.789	Pundamilia_nyererei
ENSSLDG00000023195	-	84	59.809	ENSPNYG00000018879	-	94	58.173	Pundamilia_nyererei
ENSSLDG00000023195	-	87	63.636	ENSSMAG00000008324	-	90	63.333	Scophthalmus_maximus
ENSSLDG00000023195	-	84	64.390	ENSSDUG00000015232	-	99	64.390	Seriola_dumerili
ENSSLDG00000023195	-	99	98.758	ENSSDUG00000017397	rbbp6	83	98.758	Seriola_dumerili
ENSSLDG00000023195	-	83	61.000	ENSTRUG00000010008	-	87	59.242	Takifugu_rubripes
ENSSLDG00000023195	-	91	87.387	ENSTRUG00000025959	-	82	65.426	Takifugu_rubripes
ENSSLDG00000023195	-	84	58.128	ENSTNIG00000011614	-	94	57.971	Tetraodon_nigroviridis
ENSSLDG00000023195	-	91	88.073	ENSTNIG00000005451	-	91	88.073	Tetraodon_nigroviridis