EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000024095 (Gene tree)
Gene ID: -
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 27759 bases
Position: chrPEQF01099170.1:691372-719130
Accession: 111667588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000031535	RNA_pol_Rpb1_5	PF04998.17	6.7e-101	1	1
ENSSLDP00000031517	RNA_pol_Rpb1_5	PF04998.17	8.4e-101	1	1
ENSSLDP00000031517	RNA_pol_Rpb1_4	PF05000.17	1e-20	1	1
ENSSLDP00000031535	RNA_pol_Rpb1_4	PF05000.17	1.2e-20	1	1
ENSSLDP00000031535	RNA_pol_Rpb1_2	PF00623.20	1.1e-68	1	1
ENSSLDP00000031517	RNA_pol_Rpb1_2	PF00623.20	1.1e-68	1	1
ENSSLDP00000031535	RNA_pol_Rpb1_3	PF04983.18	3.3e-37	1	1
ENSSLDP00000031517	RNA_pol_Rpb1_3	PF04983.18	4.3e-37	1	1
ENSSLDP00000031535	RNA_pol_Rpb1_1	PF04997.12	7.6e-23	1	1
ENSSLDP00000031517	RNA_pol_Rpb1_1	PF04997.12	4.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000032436	-	4740	-	ENSSLDP00000031535	1579 (aa)	-	-
ENSSLDT00000032414	-	4908	XM_023423334	ENSSLDP00000031517	1635 (aa)	XP_023279102	-

Gene Model

Click here to download ENSSLDG00000024095's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000024095's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000024095	polr1a	61	48.958	ENSSLDG00000020613	polr2a	51	39.007
ENSSLDG00000024095	polr1a	66	33.005	ENSSLDG00000023908	polr3a	69	32.785

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000024095	polr1a	100	64.986	ENSG00000068654	POLR1A	100	64.988	Homo_sapiens
ENSSLDG00000024095	polr1a	70	83.362	ENSAPOG00000017945	polr1a	99	84.304	Acanthochromis_polyacanthus
ENSSLDG00000024095	polr1a	100	64.462	ENSAMEG00000005807	POLR1A	100	66.497	Ailuropoda_melanoleuca
ENSSLDG00000024095	polr1a	100	86.525	ENSACIG00000022147	polr1a	100	86.796	Amphilophus_citrinellus
ENSSLDG00000024095	polr1a	100	85.662	ENSAOCG00000017336	polr1a	100	85.906	Amphiprion_ocellaris
ENSSLDG00000024095	polr1a	100	86.524	ENSAPEG00000016105	polr1a	100	86.768	Amphiprion_percula
ENSSLDG00000024095	polr1a	100	86.521	ENSATEG00000016773	polr1a	100	85.521	Anabas_testudineus
ENSSLDG00000024095	polr1a	87	68.119	ENSAPLG00000013871	POLR1A	99	67.577	Anas_platyrhynchos
ENSSLDG00000024095	polr1a	99	64.119	ENSACAG00000012141	POLR1A	99	63.769	Anolis_carolinensis
ENSSLDG00000024095	polr1a	100	64.628	ENSANAG00000033927	POLR1A	100	64.832	Aotus_nancymaae
ENSSLDG00000024095	polr1a	100	79.775	ENSACLG00000020541	polr1a	100	79.537	Astatotilapia_calliptera
ENSSLDG00000024095	polr1a	100	64.922	ENSBTAG00000006481	POLR1A	100	65.471	Bos_taurus
ENSSLDG00000024095	polr1a	98	41.252	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSSLDG00000024095	polr1a	100	64.447	ENSCJAG00000019547	POLR1A	100	64.730	Callithrix_jacchus
ENSSLDG00000024095	polr1a	100	64.994	ENSCAFG00000007613	POLR1A	100	65.603	Canis_familiaris
ENSSLDG00000024095	polr1a	97	71.528	ENSCAFG00020014752	POLR1A	100	65.830	Canis_lupus_dingo
ENSSLDG00000024095	polr1a	100	65.104	ENSCHIG00000018204	POLR1A	100	64.890	Capra_hircus
ENSSLDG00000024095	polr1a	100	64.049	ENSTSYG00000002761	POLR1A	100	64.340	Carlito_syrichta
ENSSLDG00000024095	polr1a	97	64.424	ENSCAPG00000010132	POLR1A	99	61.988	Cavia_aperea
ENSSLDG00000024095	polr1a	100	64.587	ENSCPOG00000012350	POLR1A	100	65.111	Cavia_porcellus
ENSSLDG00000024095	polr1a	100	64.447	ENSCCAG00000019839	POLR1A	100	64.852	Cebus_capucinus
ENSSLDG00000024095	polr1a	100	64.812	ENSCATG00000029786	POLR1A	100	64.832	Cercocebus_atys
ENSSLDG00000024095	polr1a	100	64.265	ENSCLAG00000005187	POLR1A	100	64.120	Chinchilla_lanigera
ENSSLDG00000024095	polr1a	100	64.754	ENSCSAG00000016251	POLR1A	100	64.191	Chlorocebus_sabaeus
ENSSLDG00000024095	polr1a	99	66.414	ENSCPBG00000001115	POLR1A	99	66.238	Chrysemys_picta_bellii
ENSSLDG00000024095	polr1a	91	57.723	ENSCSAVG00000007184	-	99	47.097	Ciona_savignyi
ENSSLDG00000024095	polr1a	100	61.993	ENSCANG00000031785	POLR1A	100	61.795	Colobus_angolensis_palliatus
ENSSLDG00000024095	polr1a	94	69.068	ENSCGRG00001006651	Polr1a	100	65.336	Cricetulus_griseus_chok1gshd
ENSSLDG00000024095	polr1a	60	69.068	ENSCGRG00000010834	Polr1a	100	65.400	Cricetulus_griseus_crigri
ENSSLDG00000024095	polr1a	98	82.091	ENSCSEG00000020190	polr1a	100	79.928	Cynoglossus_semilaevis
ENSSLDG00000024095	polr1a	100	79.517	ENSCVAG00000020941	polr1a	100	79.400	Cyprinodon_variegatus
ENSSLDG00000024095	polr1a	100	72.160	ENSDARG00000098375	polr1a	100	71.521	Danio_rerio
ENSSLDG00000024095	polr1a	100	61.671	ENSDNOG00000010829	POLR1A	100	61.913	Dasypus_novemcinctus
ENSSLDG00000024095	polr1a	100	67.820	ENSDORG00000008298	Polr1a	95	68.014	Dipodomys_ordii
ENSSLDG00000024095	polr1a	74	49.810	FBgn0019938	RpI1	90	46.788	Drosophila_melanogaster
ENSSLDG00000024095	polr1a	71	90.625	ENSETEG00000000412	-	71	90.625	Echinops_telfairi
ENSSLDG00000024095	polr1a	89	45.738	ENSEBUG00000005667	-	99	46.154	Eptatretus_burgeri
ENSSLDG00000024095	polr1a	100	64.429	ENSEASG00005001625	POLR1A	100	65.046	Equus_asinus_asinus
ENSSLDG00000024095	polr1a	100	64.544	ENSECAG00000036306	-	99	67.461	Equus_caballus
ENSSLDG00000024095	polr1a	100	64.544	ENSECAG00000030510	-	99	67.461	Equus_caballus
ENSSLDG00000024095	polr1a	100	64.544	ENSECAG00000010092	POLR1A	99	67.461	Equus_caballus
ENSSLDG00000024095	polr1a	83	78.035	ENSEEUG00000000676	POLR1A	79	78.035	Erinaceus_europaeus
ENSSLDG00000024095	polr1a	100	73.900	ENSELUG00000012769	polr1a	99	73.900	Esox_lucius
ENSSLDG00000024095	polr1a	100	65.663	ENSFCAG00000008966	POLR1A	100	65.489	Felis_catus
ENSSLDG00000024095	polr1a	99	64.747	ENSFALG00000010082	POLR1A	99	64.550	Ficedula_albicollis
ENSSLDG00000024095	polr1a	100	64.434	ENSFDAG00000013726	POLR1A	100	64.904	Fukomys_damarensis
ENSSLDG00000024095	polr1a	100	77.656	ENSFHEG00000005996	polr1a	100	78.327	Fundulus_heteroclitus
ENSSLDG00000024095	polr1a	100	70.418	ENSGMOG00000002230	polr1a	100	70.664	Gadus_morhua
ENSSLDG00000024095	polr1a	89	62.394	ENSGALG00000038160	-	98	62.100	Gallus_gallus
ENSSLDG00000024095	polr1a	100	79.011	ENSGAFG00000015266	polr1a	100	79.144	Gambusia_affinis
ENSSLDG00000024095	polr1a	99	83.676	ENSGACG00000018791	polr1a	100	79.930	Gasterosteus_aculeatus
ENSSLDG00000024095	polr1a	90	66.972	ENSGAGG00000004984	-	99	66.776	Gopherus_agassizii
ENSSLDG00000024095	polr1a	100	65.043	ENSGGOG00000001788	POLR1A	100	65.046	Gorilla_gorilla
ENSSLDG00000024095	polr1a	90	87.500	ENSHBUG00000020021	polr1a	98	87.795	Haplochromis_burtoni
ENSSLDG00000024095	polr1a	100	64.682	ENSHGLG00000006334	POLR1A	100	65.157	Heterocephalus_glaber_female
ENSSLDG00000024095	polr1a	100	64.496	ENSHGLG00100006614	POLR1A	100	64.968	Heterocephalus_glaber_male
ENSSLDG00000024095	polr1a	100	79.373	ENSHCOG00000003345	polr1a	100	79.252	Hippocampus_comes
ENSSLDG00000024095	polr1a	100	70.750	ENSIPUG00000013174	polr1a	100	70.809	Ictalurus_punctatus
ENSSLDG00000024095	polr1a	99	64.407	ENSSTOG00000012580	POLR1A	100	64.597	Ictidomys_tridecemlineatus
ENSSLDG00000024095	polr1a	100	67.358	ENSJJAG00000013113	Polr1a	100	65.114	Jaculus_jaculus
ENSSLDG00000024095	polr1a	100	82.999	ENSKMAG00000007399	polr1a	100	82.999	Kryptolebias_marmoratus
ENSSLDG00000024095	polr1a	100	86.054	ENSLBEG00000015401	polr1a	100	86.054	Labrus_bergylta
ENSSLDG00000024095	polr1a	53	66.162	ENSLACG00000003218	polr1a	100	66.703	Latimeria_chalumnae
ENSSLDG00000024095	polr1a	99	70.943	ENSLOCG00000010881	polr1a	100	69.634	Lepisosteus_oculatus
ENSSLDG00000024095	polr1a	100	65.009	ENSLAFG00000014948	POLR1A	100	64.986	Loxodonta_africana
ENSSLDG00000024095	polr1a	100	64.406	ENSMFAG00000046097	POLR1A	100	64.269	Macaca_fascicularis
ENSSLDG00000024095	polr1a	100	64.406	ENSMMUG00000015815	POLR1A	100	64.269	Macaca_mulatta
ENSSLDG00000024095	polr1a	100	64.406	ENSMNEG00000043313	POLR1A	100	64.269	Macaca_nemestrina
ENSSLDG00000024095	polr1a	100	64.464	ENSMLEG00000042428	POLR1A	100	63.982	Mandrillus_leucophaeus
ENSSLDG00000024095	polr1a	100	85.782	ENSMAMG00000016565	polr1a	100	85.782	Mastacembelus_armatus
ENSSLDG00000024095	polr1a	100	84.335	ENSMZEG00005004915	polr1a	100	84.217	Maylandia_zebra
ENSSLDG00000024095	polr1a	99	61.957	ENSMGAG00000013111	POLR1A	99	61.910	Meleagris_gallopavo
ENSSLDG00000024095	polr1a	90	65.327	ENSMAUG00000008497	Polr1a	98	65.325	Mesocricetus_auratus
ENSSLDG00000024095	polr1a	100	64.418	ENSMICG00000000757	POLR1A	100	64.641	Microcebus_murinus
ENSSLDG00000024095	polr1a	100	64.843	ENSMOCG00000000122	Polr1a	100	65.096	Microtus_ochrogaster
ENSSLDG00000024095	polr1a	100	79.870	ENSMMOG00000010216	polr1a	100	79.811	Mola_mola
ENSSLDG00000024095	polr1a	98	70.423	ENSMODG00000009335	POLR1A	100	64.685	Monodelphis_domestica
ENSSLDG00000024095	polr1a	100	84.493	ENSMALG00000013363	polr1a	100	84.552	Monopterus_albus
ENSSLDG00000024095	polr1a	98	68.511	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.186	Mus_caroli
ENSSLDG00000024095	polr1a	100	63.984	ENSMUSG00000049553	Polr1a	100	64.244	Mus_musculus
ENSSLDG00000024095	polr1a	100	63.783	MGP_PahariEiJ_G0022230	Polr1a	100	64.555	Mus_pahari
ENSSLDG00000024095	polr1a	99	67.339	MGP_SPRETEiJ_G0029499	Polr1a	100	63.392	Mus_spretus
ENSSLDG00000024095	polr1a	100	64.672	ENSMPUG00000009135	POLR1A	100	65.509	Mustela_putorius_furo
ENSSLDG00000024095	polr1a	100	64.503	ENSMLUG00000015723	POLR1A	100	64.963	Myotis_lucifugus
ENSSLDG00000024095	polr1a	100	64.257	ENSNGAG00000017907	Polr1a	100	64.826	Nannospalax_galili
ENSSLDG00000024095	polr1a	100	83.922	ENSNBRG00000000519	polr1a	100	83.922	Neolamprologus_brichardi
ENSSLDG00000024095	polr1a	100	63.112	ENSNLEG00000002264	POLR1A	100	63.134	Nomascus_leucogenys
ENSSLDG00000024095	polr1a	76	84.252	ENSMEUG00000011665	-	75	84.252	Notamacropus_eugenii
ENSSLDG00000024095	polr1a	99	58.871	ENSOPRG00000008269	POLR1A	100	60.118	Ochotona_princeps
ENSSLDG00000024095	polr1a	100	64.838	ENSODEG00000003542	POLR1A	100	65.137	Octodon_degus
ENSSLDG00000024095	polr1a	100	84.204	ENSONIG00000015895	polr1a	100	84.381	Oreochromis_niloticus
ENSSLDG00000024095	polr1a	100	63.919	ENSOCUG00000010138	POLR1A	100	64.994	Oryctolagus_cuniculus
ENSSLDG00000024095	polr1a	100	79.929	ENSORLG00000008753	polr1a	99	79.929	Oryzias_latipes
ENSSLDG00000024095	polr1a	100	79.904	ENSORLG00020020726	polr1a	99	79.844	Oryzias_latipes_hni
ENSSLDG00000024095	polr1a	96	88.298	ENSORLG00015016071	polr1a	99	88.298	Oryzias_latipes_hsok
ENSSLDG00000024095	polr1a	100	64.713	ENSOGAG00000004031	POLR1A	100	64.460	Otolemur_garnettii
ENSSLDG00000024095	polr1a	100	65.063	ENSOARG00000020601	POLR1A	100	65.340	Ovis_aries
ENSSLDG00000024095	polr1a	100	64.986	ENSPPAG00000042450	POLR1A	100	64.988	Pan_paniscus
ENSSLDG00000024095	polr1a	100	65.338	ENSPPRG00000006702	POLR1A	100	65.797	Panthera_pardus
ENSSLDG00000024095	polr1a	100	65.014	ENSPTIG00000018783	POLR1A	100	65.471	Panthera_tigris_altaica
ENSSLDG00000024095	polr1a	97	73.423	ENSPTRG00000012147	POLR1A	100	64.988	Pan_troglodytes
ENSSLDG00000024095	polr1a	100	64.638	ENSPANG00000025908	POLR1A	100	64.658	Papio_anubis
ENSSLDG00000024095	polr1a	100	70.438	ENSPKIG00000005468	polr1a	100	70.818	Paramormyrops_kingsleyae
ENSSLDG00000024095	polr1a	65	66.057	ENSPSIG00000009321	-	99	65.772	Pelodiscus_sinensis
ENSSLDG00000024095	polr1a	54	81.075	ENSPMGG00000009718	polr1a	95	81.075	Periophthalmus_magnuspinnatus
ENSSLDG00000024095	polr1a	100	64.925	ENSPEMG00000022224	Polr1a	100	64.593	Peromyscus_maniculatus_bairdii
ENSSLDG00000024095	polr1a	95	64.063	ENSPCIG00000004222	POLR1A	99	64.063	Phascolarctos_cinereus
ENSSLDG00000024095	polr1a	100	79.274	ENSPFOG00000005025	polr1a	100	79.567	Poecilia_formosa
ENSSLDG00000024095	polr1a	100	79.343	ENSPLAG00000021389	polr1a	100	79.565	Poecilia_latipinna
ENSSLDG00000024095	polr1a	100	78.770	ENSPMEG00000006463	polr1a	100	79.243	Poecilia_mexicana
ENSSLDG00000024095	polr1a	100	79.484	ENSPREG00000002389	polr1a	100	79.543	Poecilia_reticulata
ENSSLDG00000024095	polr1a	100	64.621	ENSPPYG00000012217	POLR1A	100	64.794	Pongo_abelii
ENSSLDG00000024095	polr1a	89	77.471	ENSPCAG00000011582	POLR1A	86	77.471	Procavia_capensis
ENSSLDG00000024095	polr1a	100	64.991	ENSPCOG00000026987	POLR1A	100	65.162	Propithecus_coquereli
ENSSLDG00000024095	polr1a	95	66.741	ENSPVAG00000012674	POLR1A	94	66.741	Pteropus_vampyrus
ENSSLDG00000024095	polr1a	100	84.217	ENSPNYG00000000026	polr1a	100	84.099	Pundamilia_nyererei
ENSSLDG00000024095	polr1a	100	71.630	ENSPNAG00000019223	polr1a	100	71.735	Pygocentrus_nattereri
ENSSLDG00000024095	polr1a	100	64.228	ENSRNOG00000009545	Polr1a	100	64.344	Rattus_norvegicus
ENSSLDG00000024095	polr1a	100	64.290	ENSRBIG00000028335	POLR1A	100	64.191	Rhinopithecus_bieti
ENSSLDG00000024095	polr1a	100	64.290	ENSRROG00000031473	POLR1A	100	64.191	Rhinopithecus_roxellana
ENSSLDG00000024095	polr1a	94	44.615	YOR341W	RPA190	86	44.615	Saccharomyces_cerevisiae
ENSSLDG00000024095	polr1a	100	64.397	ENSSBOG00000030262	POLR1A	100	64.002	Saimiri_boliviensis_boliviensis
ENSSLDG00000024095	polr1a	100	61.931	ENSSHAG00000014739	POLR1A	100	60.023	Sarcophilus_harrisii
ENSSLDG00000024095	polr1a	100	72.373	ENSSFOG00015019716	polr1a	100	69.540	Scleropages_formosus
ENSSLDG00000024095	polr1a	100	85.541	ENSSMAG00000014342	polr1a	100	85.541	Scophthalmus_maximus
ENSSLDG00000024095	polr1a	100	93.522	ENSSDUG00000014631	polr1a	100	93.522	Seriola_dumerili
ENSSLDG00000024095	polr1a	70	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSSLDG00000024095	polr1a	95	74.000	ENSSPUG00000004215	POLR1A	99	74.000	Sphenodon_punctatus
ENSSLDG00000024095	polr1a	70	86.613	ENSSPAG00000016341	polr1a	99	86.613	Stegastes_partitus
ENSSLDG00000024095	polr1a	83	65.642	ENSSSCG00000008226	POLR1A	99	65.546	Sus_scrofa
ENSSLDG00000024095	polr1a	99	64.265	ENSTGUG00000010704	POLR1A	100	63.825	Taeniopygia_guttata
ENSSLDG00000024095	polr1a	100	78.125	ENSTRUG00000002210	polr1a	99	77.594	Takifugu_rubripes
ENSSLDG00000024095	polr1a	100	70.807	ENSTNIG00000010116	polr1a	100	70.955	Tetraodon_nigroviridis
ENSSLDG00000024095	polr1a	73	84.071	ENSTBEG00000008646	POLR1A	73	84.071	Tupaia_belangeri
ENSSLDG00000024095	polr1a	100	62.421	ENSTTRG00000008597	POLR1A	100	62.899	Tursiops_truncatus
ENSSLDG00000024095	polr1a	71	67.674	ENSUAMG00000012158	-	94	68.332	Ursus_americanus
ENSSLDG00000024095	polr1a	100	66.897	ENSUMAG00000006700	POLR1A	100	65.854	Ursus_maritimus
ENSSLDG00000024095	polr1a	100	65.429	ENSVVUG00000001245	POLR1A	100	65.487	Vulpes_vulpes
ENSSLDG00000024095	polr1a	100	63.923	ENSXETG00000001952	polr1a	95	67.333	Xenopus_tropicalis
ENSSLDG00000024095	polr1a	100	79.696	ENSXMAG00000004032	polr1a	100	79.462	Xiphophorus_maculatus