EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000024847 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 18019 bases
Position: chrPEQF01099306.1:20614-38632
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000032350	KH_1	PF00013.29	3.4e-24	1	1
ENSSLDP00000032354	KH_1	PF00013.29	5.2e-24	1	1
ENSSLDP00000032354	KH_2	PF07650.17	3.3e-06	1	1
ENSSLDP00000032350	KH_2	PF07650.17	3.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000033269	-	690	-	ENSSLDP00000032350	229 (aa)	-	-
ENSSLDT00000033273	-	657	-	ENSSLDP00000032354	218 (aa)	-	-

Gene Model

Click here to download ENSSLDG00000024847's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000024847's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000024847	-	96	40.299	ENSSLDG00000005683	hnrpkl	52	40.299
ENSSLDG00000024847	-	73	34.483	ENSSLDG00000002069	hnrnpk	52	38.028
ENSSLDG00000024847	-	71	65.031	ENSSLDG00000008839	pcbp2	71	66.667
ENSSLDG00000024847	-	72	81.325	ENSSLDG00000007851	-	57	81.325
ENSSLDG00000024847	-	71	68.712	ENSSLDG00000020161	-	76	70.000
ENSSLDG00000024847	-	66	74.342	ENSSLDG00000008518	pcbp3	66	74.342
ENSSLDG00000024847	-	76	62.360	ENSSLDG00000002018	PCBP2	61	68.939

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000024847	-	75	75.000	ENSG00000090097	PCBP4	89	78.689	Homo_sapiens
ENSSLDG00000024847	-	68	98.710	ENSAPOG00000018462	-	69	98.710	Acanthochromis_polyacanthus
ENSSLDG00000024847	-	77	85.621	ENSAPOG00000009897	-	58	82.911	Acanthochromis_polyacanthus
ENSSLDG00000024847	-	69	84.177	ENSACIG00000020434	-	58	84.177	Amphilophus_citrinellus
ENSSLDG00000024847	-	79	84.536	ENSACIG00000015264	pcbp4	60	86.082	Amphilophus_citrinellus
ENSSLDG00000024847	-	60	98.540	ENSAOCG00000006924	-	70	98.540	Amphiprion_ocellaris
ENSSLDG00000024847	-	69	84.076	ENSAOCG00000021366	-	55	84.076	Amphiprion_ocellaris
ENSSLDG00000024847	-	69	96.203	ENSAPEG00000023157	pcbp4	70	99.275	Amphiprion_percula
ENSSLDG00000024847	-	68	85.256	ENSAPEG00000009555	-	64	85.256	Amphiprion_percula
ENSSLDG00000024847	-	69	85.625	ENSATEG00000006511	-	54	85.625	Anabas_testudineus
ENSSLDG00000024847	-	69	91.772	ENSATEG00000008529	pcbp4	55	91.772	Anabas_testudineus
ENSSLDG00000024847	-	79	67.568	ENSACAG00000011701	PCBP4	52	67.568	Anolis_carolinensis
ENSSLDG00000024847	-	77	86.928	ENSACLG00000025246	-	58	84.177	Astatotilapia_calliptera
ENSSLDG00000024847	-	75	75.000	ENSBTAG00000018622	PCBP4	56	68.715	Bos_taurus
ENSSLDG00000024847	-	75	75.000	ENSCATG00000032034	PCBP4	51	57.547	Cercocebus_atys
ENSSLDG00000024847	-	79	67.568	ENSCPBG00000016554	PCBP4	50	67.568	Chrysemys_picta_bellii
ENSSLDG00000024847	-	75	75.000	ENSCANG00000038865	PCBP4	54	55.556	Colobus_angolensis_palliatus
ENSSLDG00000024847	-	69	80.892	ENSCSEG00000021041	PCBP4	55	80.892	Cynoglossus_semilaevis
ENSSLDG00000024847	-	69	91.139	ENSCSEG00000014487	pcbp4	50	75.897	Cynoglossus_semilaevis
ENSSLDG00000024847	-	78	84.091	ENSCVAG00000013090	-	57	84.967	Cyprinodon_variegatus
ENSSLDG00000024847	-	66	98.675	ENSCVAG00000003674	pcbp4	68	98.675	Cyprinodon_variegatus
ENSSLDG00000024847	-	67	94.771	ENSDARG00000024276	pcbp4	86	83.969	Danio_rerio
ENSSLDG00000024847	-	80	59.524	ENSETEG00000001778	PCBP4	71	59.524	Echinops_telfairi
ENSSLDG00000024847	-	80	79.348	ENSELUG00000018204	pcbp4	78	79.348	Esox_lucius
ENSSLDG00000024847	-	77	82.911	ENSELUG00000001870	-	62	82.911	Esox_lucius
ENSSLDG00000024847	-	76	66.480	ENSFALG00000008831	PCBP4	50	66.480	Ficedula_albicollis
ENSSLDG00000024847	-	76	68.362	ENSFDAG00000012692	PCBP4	50	55.952	Fukomys_damarensis
ENSSLDG00000024847	-	51	88.889	ENSFHEG00000002769	-	65	64.748	Fundulus_heteroclitus
ENSSLDG00000024847	-	77	83.007	ENSGMOG00000017799	-	55	83.007	Gadus_morhua
ENSSLDG00000024847	-	66	98.013	ENSGAFG00000018301	pcbp4	63	98.013	Gambusia_affinis
ENSSLDG00000024847	-	77	85.621	ENSGAFG00000021090	-	50	85.621	Gambusia_affinis
ENSSLDG00000024847	-	77	83.544	ENSGACG00000002664	-	60	77.907	Gasterosteus_aculeatus
ENSSLDG00000024847	-	79	67.568	ENSGAGG00000022116	PCBP4	50	67.568	Gopherus_agassizii
ENSSLDG00000024847	-	77	74.375	ENSGGOG00000012474	PCBP4	52	51.152	Gorilla_gorilla
ENSSLDG00000024847	-	77	84.177	ENSHBUG00000005329	-	58	84.177	Haplochromis_burtoni
ENSSLDG00000024847	-	69	96.203	ENSHBUG00000009472	pcbp4	54	88.953	Haplochromis_burtoni
ENSSLDG00000024847	-	81	71.859	ENSHCOG00000010838	-	55	71.859	Hippocampus_comes
ENSSLDG00000024847	-	67	93.464	ENSIPUG00000008212	pcbp4	66	94.079	Ictalurus_punctatus
ENSSLDG00000024847	-	75	75.000	ENSSTOG00000002573	PCBP4	54	68.715	Ictidomys_tridecemlineatus
ENSSLDG00000024847	-	77	85.621	ENSKMAG00000017554	-	58	82.911	Kryptolebias_marmoratus
ENSSLDG00000024847	-	69	94.340	ENSKMAG00000014252	pcbp4	69	90.058	Kryptolebias_marmoratus
ENSSLDG00000024847	-	77	88.235	ENSLBEG00000011345	-	58	85.443	Labrus_bergylta
ENSSLDG00000024847	-	77	82.895	ENSLACG00000015899	PCBP4	85	82.895	Latimeria_chalumnae
ENSSLDG00000024847	-	69	89.241	ENSLOCG00000013402	pcbp4	62	72.781	Lepisosteus_oculatus
ENSSLDG00000024847	-	76	68.715	ENSLAFG00000010732	PCBP4	50	68.715	Loxodonta_africana
ENSSLDG00000024847	-	75	75.000	ENSMFAG00000001431	PCBP4	50	59.903	Macaca_fascicularis
ENSSLDG00000024847	-	75	75.000	ENSMMUG00000022205	PCBP4	54	69.942	Macaca_mulatta
ENSSLDG00000024847	-	75	75.000	ENSMNEG00000028553	PCBP4	50	59.903	Macaca_nemestrina
ENSSLDG00000024847	-	75	75.000	ENSMLEG00000027083	PCBP4	51	57.547	Mandrillus_leucophaeus
ENSSLDG00000024847	-	69	95.570	ENSMAMG00000010163	pcbp4	53	95.570	Mastacembelus_armatus
ENSSLDG00000024847	-	77	84.177	ENSMAMG00000011364	-	58	84.177	Mastacembelus_armatus
ENSSLDG00000024847	-	69	96.203	ENSMZEG00005008852	pcbp4	55	96.203	Maylandia_zebra
ENSSLDG00000024847	-	77	86.928	ENSMZEG00005023631	-	58	84.177	Maylandia_zebra
ENSSLDG00000024847	-	70	70.807	ENSMGAG00000005091	-	86	70.807	Meleagris_gallopavo
ENSSLDG00000024847	-	69	84.375	ENSMMOG00000020533	-	54	84.375	Mola_mola
ENSSLDG00000024847	-	60	93.478	ENSMMOG00000017756	pcbp4	57	78.363	Mola_mola
ENSSLDG00000024847	-	69	94.304	ENSMALG00000020318	pcbp4	50	94.304	Monopterus_albus
ENSSLDG00000024847	-	65	83.893	ENSMALG00000022117	-	57	83.893	Monopterus_albus
ENSSLDG00000024847	-	77	78.289	MGP_CAROLIEiJ_G0032623	Pcbp4	91	78.289	Mus_caroli
ENSSLDG00000024847	-	77	78.289	ENSMUSG00000023495	Pcbp4	88	81.553	Mus_musculus
ENSSLDG00000024847	-	77	78.289	MGP_PahariEiJ_G0015491	Pcbp4	91	78.289	Mus_pahari
ENSSLDG00000024847	-	77	78.289	MGP_SPRETEiJ_G0033768	-	91	78.289	Mus_spretus
ENSSLDG00000024847	-	75	72.093	ENSNBRG00000007475	pcbp4	60	69.022	Neolamprologus_brichardi
ENSSLDG00000024847	-	76	56.481	ENSMEUG00000006917	PCBP4	54	56.481	Notamacropus_eugenii
ENSSLDG00000024847	-	78	56.818	ENSOPRG00000008763	PCBP4	54	56.818	Ochotona_princeps
ENSSLDG00000024847	-	75	75.000	ENSODEG00000018230	PCBP4	51	68.715	Octodon_degus
ENSSLDG00000024847	-	69	91.139	ENSORLG00000003061	pcbp4	58	91.139	Oryzias_latipes
ENSSLDG00000024847	-	69	84.713	ENSORLG00000009899	-	53	84.713	Oryzias_latipes
ENSSLDG00000024847	-	77	84.177	ENSORLG00020001183	-	58	84.177	Oryzias_latipes_hni
ENSSLDG00000024847	-	69	91.139	ENSORLG00015019262	pcbp4	58	91.139	Oryzias_latipes_hsok
ENSSLDG00000024847	-	77	84.177	ENSORLG00015017819	-	58	84.177	Oryzias_latipes_hsok
ENSSLDG00000024847	-	70	84.375	ENSOMEG00000003516	-	60	84.375	Oryzias_melastigma
ENSSLDG00000024847	-	77	84.177	ENSOMEG00000011545	-	58	84.177	Oryzias_melastigma
ENSSLDG00000024847	-	75	75.000	ENSPANG00000026222	PCBP4	51	57.547	Papio_anubis
ENSSLDG00000024847	-	74	86.232	ENSPKIG00000010244	pcbp4	61	90.551	Paramormyrops_kingsleyae
ENSSLDG00000024847	-	75	71.512	ENSPSIG00000011286	PCBP4	52	71.512	Pelodiscus_sinensis
ENSSLDG00000024847	-	69	93.671	ENSPMGG00000000063	pcbp4	57	93.671	Periophthalmus_magnuspinnatus
ENSSLDG00000024847	-	70	83.230	ENSPMGG00000022732	-	59	83.230	Periophthalmus_magnuspinnatus
ENSSLDG00000024847	-	76	68.715	ENSPCIG00000018151	PCBP4	51	57.812	Phascolarctos_cinereus
ENSSLDG00000024847	-	77	85.621	ENSPFOG00000002989	-	51	85.621	Poecilia_formosa
ENSSLDG00000024847	-	70	78.261	ENSPFOG00000014474	pcbp4	71	94.118	Poecilia_formosa
ENSSLDG00000024847	-	77	64.634	ENSPLAG00000011438	-	70	62.385	Poecilia_latipinna
ENSSLDG00000024847	-	70	82.609	ENSPREG00000017370	-	57	82.609	Poecilia_reticulata
ENSSLDG00000024847	-	62	82.979	ENSPREG00000021498	-	52	65.359	Poecilia_reticulata
ENSSLDG00000024847	-	79	58.140	ENSPCAG00000009515	PCBP4	54	57.991	Procavia_capensis
ENSSLDG00000024847	-	81	52.282	ENSPVAG00000012474	PCBP4	57	51.452	Pteropus_vampyrus
ENSSLDG00000024847	-	69	84.713	ENSPNYG00000003098	-	55	84.713	Pundamilia_nyererei
ENSSLDG00000024847	-	70	95.031	ENSPNYG00000019234	pcbp4	56	95.031	Pundamilia_nyererei
ENSSLDG00000024847	-	76	66.851	ENSSHAG00000007362	PCBP4	79	66.120	Sarcophilus_harrisii
ENSSLDG00000024847	-	68	83.333	ENSSFOG00015012075	PCBP4	50	83.333	Scleropages_formosus
ENSSLDG00000024847	-	79	86.813	ENSSMAG00000005827	pcbp4	68	86.813	Scophthalmus_maximus
ENSSLDG00000024847	-	77	86.275	ENSSMAG00000009392	-	50	86.275	Scophthalmus_maximus
ENSSLDG00000024847	-	71	93.865	ENSSDUG00000017719	pcbp4	59	93.865	Seriola_dumerili
ENSSLDG00000024847	-	72	81.325	ENSSDUG00000015540	-	57	81.325	Seriola_dumerili
ENSSLDG00000024847	-	77	86.275	ENSSPAG00000003033	-	58	83.544	Stegastes_partitus
ENSSLDG00000024847	-	76	59.394	ENSTGUG00000006393	PCBP4	54	57.225	Taeniopygia_guttata
ENSSLDG00000024847	-	67	87.582	ENSTRUG00000007426	-	54	87.582	Takifugu_rubripes
ENSSLDG00000024847	-	75	76.744	ENSTNIG00000017887	-	60	76.744	Tetraodon_nigroviridis
ENSSLDG00000024847	-	58	52.247	ENSTBEG00000015770	PCBP4	50	52.247	Tupaia_belangeri
ENSSLDG00000024847	-	64	72.857	ENSUAMG00000020871	PCBP4	52	45.894	Ursus_americanus
ENSSLDG00000024847	-	66	98.667	ENSXCOG00000017325	pcbp4	63	98.667	Xiphophorus_couchianus
ENSSLDG00000024847	-	55	86.408	ENSXCOG00000000111	-	63	86.408	Xiphophorus_couchianus
ENSSLDG00000024847	-	69	94.937	ENSXMAG00000015709	pcbp4	56	94.937	Xiphophorus_maculatus
ENSSLDG00000024847	-	77	85.621	ENSXMAG00000024530	-	51	85.621	Xiphophorus_maculatus