EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSLDG00000025242 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Seriola_lalandi_dorsalis
Status
putative
Strand
Minus strand
Length
4312 bases
Position
chrPEQF01099433.1:285148-289459
Accession
111645742
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSLDP00000032935LSMPF01423.224.7e-2011
ENSSLDP00000032938LSMPF01423.223.2e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSLDT00000033862-180-ENSSLDP0000003293859 (aa)--
ENSSLDT00000033859-2943XM_023395036ENSSLDP0000003293591 (aa)XP_023250804UPI00077D37E5
Gene Model
Click here to download ENSSLDG00000025242's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000025242's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSLDG00000025242lsm58676.923ENSSLDG00000008014-9376.923
ENSSLDG00000025242lsm58630.488ENSSLDG00000015364snrpe8730.488
ENSSLDG00000025242lsm58234.667ENSSLDG00000006399lsm37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSLDG00000025242lsm510094.505ENSG00000106355LSM510096.774Homo_sapiens
ENSSLDG00000025242lsm510098.901ENSAPOG00000020779LSM510098.901Acanthochromis_polyacanthus
ENSSLDG00000025242lsm59097.561ENSAPOG00000011743LSM5100100.000Acanthochromis_polyacanthus
ENSSLDG00000025242lsm510094.505ENSAMEG00000006700LSM510094.505Ailuropoda_melanoleuca
ENSSLDG00000025242lsm59398.182ENSACIG00000019185lsm59898.182Amphilophus_citrinellus
ENSSLDG00000025242lsm510098.901ENSAOCG00000001636lsm510098.901Amphiprion_ocellaris
ENSSLDG00000025242lsm510098.901ENSAPEG00000008151lsm510098.901Amphiprion_percula
ENSSLDG00000025242lsm57695.556ENSAPEG00000008201lsm5100100.000Amphiprion_percula
ENSSLDG00000025242lsm510098.305ENSATEG00000020470lsm510098.305Anabas_testudineus
ENSSLDG00000025242lsm58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSSLDG00000025242lsm56292.857ENSACAG00000009530LSM59392.857Anolis_carolinensis
ENSSLDG00000025242lsm510073.626ENSANAG00000037758-10073.626Aotus_nancymaae
ENSSLDG00000025242lsm59992.222ENSANAG00000024192-9492.222Aotus_nancymaae
ENSSLDG00000025242lsm510095.604ENSANAG00000034409-10095.604Aotus_nancymaae
ENSSLDG00000025242lsm59698.851ENSACLG00000012891lsm59998.851Astatotilapia_calliptera
ENSSLDG00000025242lsm510084.043ENSAMXG00000035543lsm510084.043Astyanax_mexicanus
ENSSLDG00000025242lsm510094.505ENSBTAG00000002332LSM510094.505Bos_taurus
ENSSLDG00000025242lsm55375.000ENSBTAG00000052014-6375.000Bos_taurus
ENSSLDG00000025242lsm510072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSSLDG00000025242lsm59982.222ENSCJAG00000005678-10082.222Callithrix_jacchus
ENSSLDG00000025242lsm510094.505ENSCJAG00000047379LSM58184.615Callithrix_jacchus
ENSSLDG00000025242lsm55586.000ENSCAFG00000030781-5886.000Canis_familiaris
ENSSLDG00000025242lsm510093.407ENSCAFG00000019261-10093.407Canis_familiaris
ENSSLDG00000025242lsm510094.505ENSCAFG00020004946LSM510094.505Canis_lupus_dingo
ENSSLDG00000025242lsm510094.505ENSCHIG00000024539LSM510094.505Capra_hircus
ENSSLDG00000025242lsm510092.308ENSCHIG00000004079-10092.308Capra_hircus
ENSSLDG00000025242lsm58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSSLDG00000025242lsm510094.505ENSTSYG00000006449-10094.505Carlito_syrichta
ENSSLDG00000025242lsm510076.923ENSTSYG00000026530-9176.923Carlito_syrichta
ENSSLDG00000025242lsm510082.418ENSTSYG00000028728-10082.418Carlito_syrichta
ENSSLDG00000025242lsm510069.231ENSTSYG00000036637-10069.231Carlito_syrichta
ENSSLDG00000025242lsm58290.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSSLDG00000025242lsm510094.505ENSCPOG00000036386LSM510094.505Cavia_porcellus
ENSSLDG00000025242lsm510094.505ENSCCAG00000037808-10094.505Cebus_capucinus
ENSSLDG00000025242lsm510092.308ENSCCAG00000032123-10092.308Cebus_capucinus
ENSSLDG00000025242lsm510093.407ENSCCAG00000000821-10093.407Cebus_capucinus
ENSSLDG00000025242lsm510063.736ENSCCAG00000037334-10063.736Cebus_capucinus
ENSSLDG00000025242lsm510075.824ENSCCAG00000032792-10075.824Cebus_capucinus
ENSSLDG00000025242lsm59983.333ENSCATG00000014790-9590.909Cercocebus_atys
ENSSLDG00000025242lsm510094.505ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSSLDG00000025242lsm510094.505ENSCLAG00000000202LSM510094.505Chinchilla_lanigera
ENSSLDG00000025242lsm510080.220ENSCLAG00000005062-9080.220Chinchilla_lanigera
ENSSLDG00000025242lsm58294.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSSLDG00000025242lsm510094.505ENSCPBG00000013685LSM510094.505Chrysemys_picta_bellii
ENSSLDG00000025242lsm59785.227ENSCING00000020625-9985.227Ciona_intestinalis
ENSSLDG00000025242lsm59587.209ENSCSAVG00000001439-9887.209Ciona_savignyi
ENSSLDG00000025242lsm510094.505ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSSLDG00000025242lsm510094.505ENSCGRG00001015461Lsm510094.505Cricetulus_griseus_chok1gshd
ENSSLDG00000025242lsm58297.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSSLDG00000025242lsm510096.610ENSCSEG00000015286lsm510096.610Cynoglossus_semilaevis
ENSSLDG00000025242lsm510098.901ENSCVAG00000004262lsm510098.901Cyprinodon_variegatus
ENSSLDG00000025242lsm510096.703ENSDARG00000071573lsm510098.387Danio_rerio
ENSSLDG00000025242lsm510094.505ENSDNOG00000034958LSM510094.505Dasypus_novemcinctus
ENSSLDG00000025242lsm59683.908ENSDNOG00000049495-9683.908Dasypus_novemcinctus
ENSSLDG00000025242lsm510094.505ENSDORG00000009422Lsm510094.505Dipodomys_ordii
ENSSLDG00000025242lsm59580.233FBgn0035675CG66109580.233Drosophila_melanogaster
ENSSLDG00000025242lsm58178.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSSLDG00000025242lsm59862.921ENSETEG00000000777-9962.921Echinops_telfairi
ENSSLDG00000025242lsm510094.505ENSETEG00000018068LSM510094.505Echinops_telfairi
ENSSLDG00000025242lsm59876.404ENSETEG00000010651-9976.404Echinops_telfairi
ENSSLDG00000025242lsm59973.333ENSETEG00000001469-9973.333Echinops_telfairi
ENSSLDG00000025242lsm510092.308ENSEBUG00000008540lsm510092.308Eptatretus_burgeri
ENSSLDG00000025242lsm510094.505ENSEASG00005003500LSM510094.505Equus_asinus_asinus
ENSSLDG00000025242lsm510080.220ENSECAG00000018445LSM510080.220Equus_caballus
ENSSLDG00000025242lsm57686.667ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSSLDG00000025242lsm510097.802ENSELUG00000007792lsm510097.802Esox_lucius
ENSSLDG00000025242lsm510094.505ENSFCAG00000000230LSM510094.505Felis_catus
ENSSLDG00000025242lsm58497.368ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSSLDG00000025242lsm59067.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSSLDG00000025242lsm510094.505ENSFDAG00000008767LSM510094.505Fukomys_damarensis
ENSSLDG00000025242lsm510077.174ENSFHEG00000004011lsm510077.174Fundulus_heteroclitus
ENSSLDG00000025242lsm59998.889ENSGMOG00000018235lsm510098.889Gadus_morhua
ENSSLDG00000025242lsm510094.505ENSGALG00000041625LSM510094.505Gallus_gallus
ENSSLDG00000025242lsm57695.556ENSGAFG00000016824lsm5100100.000Gambusia_affinis
ENSSLDG00000025242lsm510097.802ENSGACG00000005528lsm510097.802Gasterosteus_aculeatus
ENSSLDG00000025242lsm510094.505ENSGAGG00000015593LSM510094.505Gopherus_agassizii
ENSSLDG00000025242lsm510094.505ENSGGOG00000043469LSM510094.505Gorilla_gorilla
ENSSLDG00000025242lsm59698.851ENSHBUG00000013773lsm59998.851Haplochromis_burtoni
ENSSLDG00000025242lsm510094.505ENSHGLG00000011765LSM510094.505Heterocephalus_glaber_female
ENSSLDG00000025242lsm510091.209ENSHGLG00100015610LSM510091.209Heterocephalus_glaber_male
ENSSLDG00000025242lsm510096.610ENSHCOG00000008288lsm510096.610Hippocampus_comes
ENSSLDG00000025242lsm510096.703ENSIPUG00000021095LSM510096.703Ictalurus_punctatus
ENSSLDG00000025242lsm510094.505ENSSTOG00000012662LSM510094.505Ictidomys_tridecemlineatus
ENSSLDG00000025242lsm59280.233ENSSTOG00000033886-9780.233Ictidomys_tridecemlineatus
ENSSLDG00000025242lsm510092.308ENSJJAG00000012145-10092.308Jaculus_jaculus
ENSSLDG00000025242lsm58787.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSSLDG00000025242lsm510067.033ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSSLDG00000025242lsm510097.802ENSKMAG00000021861lsm510097.802Kryptolebias_marmoratus
ENSSLDG00000025242lsm56285.714ENSLBEG00000017379lsm59285.714Labrus_bergylta
ENSSLDG00000025242lsm510090.110ENSLBEG00000009235LSM57090.110Labrus_bergylta
ENSSLDG00000025242lsm510095.604ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSSLDG00000025242lsm510096.703ENSLOCG00000012903lsm510096.703Lepisosteus_oculatus
ENSSLDG00000025242lsm510070.330ENSLAFG00000027938-10070.330Loxodonta_africana
ENSSLDG00000025242lsm510094.505ENSLAFG00000029579LSM510094.505Loxodonta_africana
ENSSLDG00000025242lsm510094.505ENSMFAG00000038508LSM510094.505Macaca_fascicularis
ENSSLDG00000025242lsm55389.583ENSMFAG00000031187-8189.583Macaca_fascicularis
ENSSLDG00000025242lsm510092.308ENSMFAG00000030152-10092.308Macaca_fascicularis
ENSSLDG00000025242lsm59984.444ENSMMUG00000039822-10084.444Macaca_mulatta
ENSSLDG00000025242lsm510092.308ENSMMUG00000030131-10092.308Macaca_mulatta
ENSSLDG00000025242lsm55784.615ENSMMUG00000045129-8184.615Macaca_mulatta
ENSSLDG00000025242lsm510094.505ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSSLDG00000025242lsm510092.308ENSMNEG00000037935-10092.308Macaca_nemestrina
ENSSLDG00000025242lsm510094.505ENSMLEG00000024945LSM510094.505Mandrillus_leucophaeus
ENSSLDG00000025242lsm59883.146ENSMLEG00000034037-10083.146Mandrillus_leucophaeus
ENSSLDG00000025242lsm510092.308ENSMAMG00000012869lsm510092.308Mastacembelus_armatus
ENSSLDG00000025242lsm59698.851ENSMZEG00005019554lsm59998.851Maylandia_zebra
ENSSLDG00000025242lsm510094.505ENSMGAG00000012117LSM510094.505Meleagris_gallopavo
ENSSLDG00000025242lsm510094.505ENSMAUG00000012222Lsm510094.505Mesocricetus_auratus
ENSSLDG00000025242lsm510093.407ENSMAUG00000008132-10093.407Mesocricetus_auratus
ENSSLDG00000025242lsm59973.333ENSMICG00000033928-9673.333Microcebus_murinus
ENSSLDG00000025242lsm510094.505ENSMICG00000005353LSM510094.505Microcebus_murinus
ENSSLDG00000025242lsm510094.505ENSMOCG00000012018Lsm510094.505Microtus_ochrogaster
ENSSLDG00000025242lsm584100.000ENSMMOG00000004026lsm587100.000Mola_mola
ENSSLDG00000025242lsm57693.333ENSMODG00000013274-10096.774Monodelphis_domestica
ENSSLDG00000025242lsm57688.889ENSMALG00000010343lsm510093.548Monopterus_albus
ENSSLDG00000025242lsm510094.505MGP_CAROLIEiJ_G0028421Lsm510094.505Mus_caroli
ENSSLDG00000025242lsm510094.505ENSMUSG00000091625Lsm510094.505Mus_musculus
ENSSLDG00000025242lsm510094.505MGP_PahariEiJ_G0022171Lsm510094.505Mus_pahari
ENSSLDG00000025242lsm510094.505MGP_SPRETEiJ_G0029423Lsm510094.505Mus_spretus
ENSSLDG00000025242lsm510094.505ENSMLUG00000017028LSM510094.505Myotis_lucifugus
ENSSLDG00000025242lsm510094.505ENSNGAG00000024142Lsm510094.505Nannospalax_galili
ENSSLDG00000025242lsm59974.444ENSNGAG00000022569-9674.444Nannospalax_galili
ENSSLDG00000025242lsm510082.796ENSNGAG00000017707-10082.796Nannospalax_galili
ENSSLDG00000025242lsm57695.556ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSSLDG00000025242lsm510094.505ENSNLEG00000015268LSM510094.505Nomascus_leucogenys
ENSSLDG00000025242lsm58297.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSSLDG00000025242lsm510094.505ENSODEG00000019072-10094.505Octodon_degus
ENSSLDG00000025242lsm510094.505ENSODEG00000008258-10094.505Octodon_degus
ENSSLDG00000025242lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSSLDG00000025242lsm510094.505ENSOCUG00000029043LSM510094.505Oryctolagus_cuniculus
ENSSLDG00000025242lsm510097.802ENSORLG00000027725lsm55897.802Oryzias_latipes
ENSSLDG00000025242lsm59694.253ENSORLG00020003019lsm58694.253Oryzias_latipes_hni
ENSSLDG00000025242lsm510097.802ENSORLG00015003338lsm510097.802Oryzias_latipes_hsok
ENSSLDG00000025242lsm510096.703ENSOMEG00000001078lsm510096.703Oryzias_melastigma
ENSSLDG00000025242lsm510094.505ENSOGAG00000013892LSM510094.505Otolemur_garnettii
ENSSLDG00000025242lsm510094.505ENSOARG00000006944LSM510094.505Ovis_aries
ENSSLDG00000025242lsm510094.505ENSPPAG00000003697-10094.505Pan_paniscus
ENSSLDG00000025242lsm510094.505ENSPPRG00000002550LSM510094.505Panthera_pardus
ENSSLDG00000025242lsm510094.505ENSPTIG00000015604LSM510094.505Panthera_tigris_altaica
ENSSLDG00000025242lsm510078.022ENSPTRG00000049488-10080.220Pan_troglodytes
ENSSLDG00000025242lsm510094.505ENSPTRG00000019057LSM510094.505Pan_troglodytes
ENSSLDG00000025242lsm59984.444ENSPANG00000032538-10084.444Papio_anubis
ENSSLDG00000025242lsm510091.209ENSPANG00000033477-10091.209Papio_anubis
ENSSLDG00000025242lsm510094.505ENSPANG00000032179-10094.505Papio_anubis
ENSSLDG00000025242lsm510098.901ENSPKIG00000011910lsm510098.901Paramormyrops_kingsleyae
ENSSLDG00000025242lsm58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSSLDG00000025242lsm57695.556ENSPMGG00000011699lsm5100100.000Periophthalmus_magnuspinnatus
ENSSLDG00000025242lsm55291.489ENSPEMG00000019994-8091.489Peromyscus_maniculatus_bairdii
ENSSLDG00000025242lsm510067.033ENSPEMG00000022375-10067.033Peromyscus_maniculatus_bairdii
ENSSLDG00000025242lsm510098.901ENSPFOG00000001433lsm510098.901Poecilia_formosa
ENSSLDG00000025242lsm510098.901ENSPLAG00000009665lsm510098.901Poecilia_latipinna
ENSSLDG00000025242lsm510098.901ENSPMEG00000022265lsm510098.901Poecilia_mexicana
ENSSLDG00000025242lsm57695.556ENSPREG00000022452lsm5100100.000Poecilia_reticulata
ENSSLDG00000025242lsm510091.209ENSPPYG00000017661LSM510091.209Pongo_abelii
ENSSLDG00000025242lsm58995.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSSLDG00000025242lsm510094.505ENSPVAG00000009786LSM510094.505Pteropus_vampyrus
ENSSLDG00000025242lsm59698.851ENSPNYG00000022236lsm59998.851Pundamilia_nyererei
ENSSLDG00000025242lsm510096.703ENSPNAG00000001887lsm510096.703Pygocentrus_nattereri
ENSSLDG00000025242lsm510091.304ENSRNOG00000027305AABR07065089.110091.304Rattus_norvegicus
ENSSLDG00000025242lsm510094.505ENSRNOG00000042126Lsm510094.505Rattus_norvegicus
ENSSLDG00000025242lsm510093.407ENSRBIG00000024431-10093.407Rhinopithecus_bieti
ENSSLDG00000025242lsm510094.505ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSSLDG00000025242lsm510094.505ENSRBIG00000030340-10094.505Rhinopithecus_bieti
ENSSLDG00000025242lsm510094.505ENSRBIG00000030714-10094.505Rhinopithecus_bieti
ENSSLDG00000025242lsm510094.505ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSSLDG00000025242lsm510094.505ENSRROG00000023884-10094.505Rhinopithecus_roxellana
ENSSLDG00000025242lsm510094.505ENSRROG00000004655-10094.505Rhinopithecus_roxellana
ENSSLDG00000025242lsm58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSSLDG00000025242lsm510092.308ENSSBOG00000019124-10092.308Saimiri_boliviensis_boliviensis
ENSSLDG00000025242lsm510072.527ENSSBOG00000034794-10072.527Saimiri_boliviensis_boliviensis
ENSSLDG00000025242lsm510094.505ENSSBOG00000012312LSM510094.505Saimiri_boliviensis_boliviensis
ENSSLDG00000025242lsm510098.901ENSSFOG00015010099lsm510098.901Scleropages_formosus
ENSSLDG00000025242lsm510096.610ENSSMAG00000007895lsm510096.610Scophthalmus_maximus
ENSSLDG00000025242lsm57695.556ENSSDUG00000010762lsm5100100.000Seriola_dumerili
ENSSLDG00000025242lsm510065.934ENSSARG00000003330LSM510065.934Sorex_araneus
ENSSLDG00000025242lsm510092.308ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSSLDG00000025242lsm510098.305ENSSPAG00000005435lsm510098.305Stegastes_partitus
ENSSLDG00000025242lsm510094.505ENSSSCG00000026064-10094.505Sus_scrofa
ENSSLDG00000025242lsm57684.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSSLDG00000025242lsm510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSSLDG00000025242lsm58590.244ENSTRUG00000017749lsm56490.244Takifugu_rubripes
ENSSLDG00000025242lsm59598.837ENSTNIG00000008695lsm59898.837Tetraodon_nigroviridis
ENSSLDG00000025242lsm510094.505ENSTBEG00000004876LSM510094.505Tupaia_belangeri
ENSSLDG00000025242lsm510094.505ENSTTRG00000004237LSM510094.505Tursiops_truncatus
ENSSLDG00000025242lsm55784.615ENSUAMG00000009786LSM56884.615Ursus_americanus
ENSSLDG00000025242lsm510093.407ENSUMAG00000002625LSM56593.407Ursus_maritimus
ENSSLDG00000025242lsm510094.505ENSVPAG00000009985LSM510094.505Vicugna_pacos
ENSSLDG00000025242lsm510094.505ENSVVUG00000021311LSM510094.505Vulpes_vulpes
ENSSLDG00000025242lsm59093.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSSLDG00000025242lsm57695.556ENSXCOG00000015348lsm5100100.000Xiphophorus_couchianus
ENSSLDG00000025242lsm510098.901ENSXMAG00000029988lsm510098.901Xiphophorus_maculatus

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