EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSLDG00000025316 (Gene tree)
Gene ID: -
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Seriola_lalandi_dorsalis
Status: putative
Strand: Minus strand
Length: 10197 bases
Position: chrPEQF01099378.1:520603-530799
Accession: 111672473
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSLDP00000033068	tRNA-synt_1g	PF09334.11	7.8e-13	1	1
ENSSLDP00000033068	Anticodon_1	PF08264.13	1.5e-36	1	1
ENSSLDP00000033068	tRNA-synt_1	PF00133.22	2.6e-208	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSLDT00000033992	-	3834	XM_023429898	ENSSLDP00000033068	1277 (aa)	XP_023285666	UPI000C6F62E2

Gene Model

Click here to download ENSSLDG00000025316's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSLDG00000025316's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSLDG00000025316	vars	76	49.491	ENSSLDG00000015492	vars2	92	49.491

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSLDG00000025316	vars	100	64.158	ENSG00000204394	VARS	99	71.779	Homo_sapiens
ENSSLDG00000025316	vars	94	91.784	ENSAPOG00000020921	vars	96	91.535	Acanthochromis_polyacanthus
ENSSLDG00000025316	vars	94	91.784	ENSAPOG00000020691	vars	96	91.535	Acanthochromis_polyacanthus
ENSSLDG00000025316	vars	100	64.419	ENSAMEG00000006417	VARS	100	64.479	Ailuropoda_melanoleuca
ENSSLDG00000025316	vars	100	90.703	ENSACIG00000013752	vars	100	90.625	Amphilophus_citrinellus
ENSSLDG00000025316	vars	100	92.326	ENSAOCG00000002447	vars	99	92.169	Amphiprion_ocellaris
ENSSLDG00000025316	vars	100	92.247	ENSAPEG00000010638	vars	99	92.091	Amphiprion_percula
ENSSLDG00000025316	vars	100	88.125	ENSATEG00000020219	vars	100	87.891	Anabas_testudineus
ENSSLDG00000025316	vars	90	71.194	ENSACAG00000029133	-	99	71.194	Anolis_carolinensis
ENSSLDG00000025316	vars	100	64.081	ENSANAG00000015453	VARS	100	64.319	Aotus_nancymaae
ENSSLDG00000025316	vars	100	92.488	ENSACLG00000025699	vars	97	92.488	Astatotilapia_calliptera
ENSSLDG00000025316	vars	96	81.077	ENSAMXG00000017716	vars	96	80.995	Astyanax_mexicanus
ENSSLDG00000025316	vars	100	64.701	ENSBTAG00000005631	VARS	100	64.783	Bos_taurus
ENSSLDG00000025316	vars	100	64.081	ENSCJAG00000002604	VARS	100	64.319	Callithrix_jacchus
ENSSLDG00000025316	vars	100	64.469	ENSCAFG00000000636	VARS	100	64.374	Canis_familiaris
ENSSLDG00000025316	vars	94	65.674	ENSCAFG00020020790	VARS	96	65.568	Canis_lupus_dingo
ENSSLDG00000025316	vars	100	64.701	ENSCHIG00000011008	VARS	100	64.861	Capra_hircus
ENSSLDG00000025316	vars	100	64.003	ENSTSYG00000001567	VARS	100	64.009	Carlito_syrichta
ENSSLDG00000025316	vars	91	67.556	ENSCAPG00000013736	VARS	98	67.412	Cavia_aperea
ENSSLDG00000025316	vars	100	63.981	ENSCPOG00000000870	VARS	100	63.700	Cavia_porcellus
ENSSLDG00000025316	vars	100	63.981	ENSCCAG00000035656	VARS	100	64.065	Cebus_capucinus
ENSSLDG00000025316	vars	100	64.319	ENSCATG00000022394	VARS	100	64.628	Cercocebus_atys
ENSSLDG00000025316	vars	93	63.725	ENSCLAG00000009470	VARS	97	63.510	Chinchilla_lanigera
ENSSLDG00000025316	vars	100	64.164	ENSCSAG00000008784	VARS	100	64.474	Chlorocebus_sabaeus
ENSSLDG00000025316	vars	77	74.540	ENSCPBG00000007943	VARS	96	74.540	Chrysemys_picta_bellii
ENSSLDG00000025316	vars	100	64.319	ENSCANG00000033570	VARS	100	64.628	Colobus_angolensis_palliatus
ENSSLDG00000025316	vars	100	63.926	ENSCGRG00001005686	Vars	100	64.241	Cricetulus_griseus_chok1gshd
ENSSLDG00000025316	vars	93	62.182	ENSCGRG00000013352	Vars	78	62.520	Cricetulus_griseus_crigri
ENSSLDG00000025316	vars	100	84.050	ENSCSEG00000019652	vars	100	84.050	Cynoglossus_semilaevis
ENSSLDG00000025316	vars	100	91.002	ENSCVAG00000022398	vars	100	90.923	Cyprinodon_variegatus
ENSSLDG00000025316	vars	100	85.200	ENSDARG00000044575	vars	100	85.200	Danio_rerio
ENSSLDG00000025316	vars	86	68.227	ENSDORG00000016433	Vars	94	70.616	Dipodomys_ordii
ENSSLDG00000025316	vars	68	74.141	ENSETEG00000003824	VARS	77	74.141	Echinops_telfairi
ENSSLDG00000025316	vars	51	73.310	ENSEBUG00000007086	vars	82	73.310	Eptatretus_burgeri
ENSSLDG00000025316	vars	57	65.800	ENSEBUG00000004637	vars	100	65.800	Eptatretus_burgeri
ENSSLDG00000025316	vars	100	64.701	ENSEASG00005015673	VARS	100	64.938	Equus_asinus_asinus
ENSSLDG00000025316	vars	100	64.651	ENSECAG00000014620	VARS	100	64.811	Equus_caballus
ENSSLDG00000025316	vars	72	71.679	ENSEEUG00000004116	VARS	73	71.679	Erinaceus_europaeus
ENSSLDG00000025316	vars	100	85.714	ENSELUG00000006550	vars	97	85.714	Esox_lucius
ENSSLDG00000025316	vars	100	64.701	ENSFCAG00000004510	VARS	100	64.706	Felis_catus
ENSSLDG00000025316	vars	83	69.822	ENSFDAG00000011401	VARS	100	69.458	Fukomys_damarensis
ENSSLDG00000025316	vars	100	88.967	ENSFHEG00000010672	vars	100	88.967	Fundulus_heteroclitus
ENSSLDG00000025316	vars	100	82.931	ENSGMOG00000014908	vars	100	83.164	Gadus_morhua
ENSSLDG00000025316	vars	100	90.454	ENSGAFG00000021630	vars	100	90.297	Gambusia_affinis
ENSSLDG00000025316	vars	93	91.520	ENSGACG00000009601	vars	100	87.627	Gasterosteus_aculeatus
ENSSLDG00000025316	vars	50	59.502	ENSGAGG00000006508	-	91	59.346	Gopherus_agassizii
ENSSLDG00000025316	vars	100	64.319	ENSGGOG00000011364	VARS	100	64.628	Gorilla_gorilla
ENSSLDG00000025316	vars	100	92.567	ENSHBUG00000017151	vars	97	92.567	Haplochromis_burtoni
ENSSLDG00000025316	vars	100	63.898	ENSHGLG00000011646	VARS	100	63.820	Heterocephalus_glaber_female
ENSSLDG00000025316	vars	94	60.682	ENSHGLG00100018062	VARS	99	60.357	Heterocephalus_glaber_male
ENSSLDG00000025316	vars	99	85.266	ENSHCOG00000012198	vars	99	85.266	Hippocampus_comes
ENSSLDG00000025316	vars	100	84.363	ENSIPUG00000005218	vars	100	84.441	Ictalurus_punctatus
ENSSLDG00000025316	vars	100	64.934	ENSSTOG00000013112	VARS	100	64.706	Ictidomys_tridecemlineatus
ENSSLDG00000025316	vars	100	63.601	ENSJJAG00000019749	-	100	63.615	Jaculus_jaculus
ENSSLDG00000025316	vars	100	52.259	ENSJJAG00000015343	-	100	52.147	Jaculus_jaculus
ENSSLDG00000025316	vars	100	87.471	ENSKMAG00000009455	vars	100	87.471	Kryptolebias_marmoratus
ENSSLDG00000025316	vars	100	88.024	ENSLBEG00000010341	vars	99	88.024	Labrus_bergylta
ENSSLDG00000025316	vars	94	66.639	ENSLACG00000015232	VARS	99	66.831	Latimeria_chalumnae
ENSSLDG00000025316	vars	100	75.352	ENSLOCG00000004240	vars	100	75.509	Lepisosteus_oculatus
ENSSLDG00000025316	vars	100	64.286	ENSLAFG00000023090	VARS	100	64.208	Loxodonta_africana
ENSSLDG00000025316	vars	100	64.164	ENSMFAG00000001032	VARS	100	64.474	Macaca_fascicularis
ENSSLDG00000025316	vars	100	64.164	ENSMMUG00000006828	VARS	100	64.474	Macaca_mulatta
ENSSLDG00000025316	vars	100	64.164	ENSMNEG00000042072	VARS	100	64.474	Macaca_nemestrina
ENSSLDG00000025316	vars	100	64.241	ENSMLEG00000039307	VARS	100	64.551	Mandrillus_leucophaeus
ENSSLDG00000025316	vars	100	91.778	ENSMAMG00000003949	vars	100	91.778	Mastacembelus_armatus
ENSSLDG00000025316	vars	100	92.488	ENSMZEG00005018327	vars	97	92.488	Maylandia_zebra
ENSSLDG00000025316	vars	100	63.848	ENSMAUG00000006715	Vars	100	64.164	Mesocricetus_auratus
ENSSLDG00000025316	vars	100	64.214	ENSMICG00000003548	VARS	100	64.009	Microcebus_murinus
ENSSLDG00000025316	vars	100	63.101	ENSMOCG00000015404	Vars	100	63.292	Microtus_ochrogaster
ENSSLDG00000025316	vars	100	87.706	ENSMMOG00000015801	vars	100	87.862	Mola_mola
ENSSLDG00000025316	vars	100	64.861	ENSMODG00000015204	-	100	64.783	Monodelphis_domestica
ENSSLDG00000025316	vars	99	92.633	ENSMALG00000022532	vars	99	92.633	Monopterus_albus
ENSSLDG00000025316	vars	100	64.596	MGP_CAROLIEiJ_G0021491	Vars	100	64.706	Mus_caroli
ENSSLDG00000025316	vars	100	64.596	ENSMUSG00000007029	Vars	100	64.706	Mus_musculus
ENSSLDG00000025316	vars	100	64.596	MGP_PahariEiJ_G0020486	Vars	100	64.596	Mus_pahari
ENSSLDG00000025316	vars	100	64.674	MGP_SPRETEiJ_G0022396	Vars	100	64.783	Mus_spretus
ENSSLDG00000025316	vars	100	64.313	ENSMPUG00000010821	VARS	100	64.374	Mustela_putorius_furo
ENSSLDG00000025316	vars	78	67.096	ENSMLUG00000013126	VARS	100	67.095	Myotis_lucifugus
ENSSLDG00000025316	vars	100	64.286	ENSNGAG00000012151	Vars	100	64.219	Nannospalax_galili
ENSSLDG00000025316	vars	100	92.332	ENSNBRG00000020520	vars	100	92.332	Neolamprologus_brichardi
ENSSLDG00000025316	vars	100	64.391	ENSNLEG00000006351	VARS	100	64.628	Nomascus_leucogenys
ENSSLDG00000025316	vars	94	72.144	ENSMEUG00000011378	VARS	100	62.966	Notamacropus_eugenii
ENSSLDG00000025316	vars	100	64.391	ENSOPRG00000003607	VARS	100	64.706	Ochotona_princeps
ENSSLDG00000025316	vars	100	63.587	ENSODEG00000017681	VARS	100	63.509	Octodon_degus
ENSSLDG00000025316	vars	100	91.355	ENSONIG00000013064	vars	100	93.652	Oreochromis_niloticus
ENSSLDG00000025316	vars	77	66.979	ENSOANG00000005400	VARS	98	66.745	Ornithorhynchus_anatinus
ENSSLDG00000025316	vars	100	63.276	ENSOCUG00000022463	VARS	100	63.012	Oryctolagus_cuniculus
ENSSLDG00000025316	vars	100	89.486	ENSORLG00000013063	vars	100	89.564	Oryzias_latipes
ENSSLDG00000025316	vars	100	89.906	ENSORLG00020003504	vars	100	89.906	Oryzias_latipes_hni
ENSSLDG00000025316	vars	100	90.211	ENSORLG00015009001	vars	100	90.211	Oryzias_latipes_hsok
ENSSLDG00000025316	vars	100	90.368	ENSOMEG00000015016	vars	100	90.368	Oryzias_melastigma
ENSSLDG00000025316	vars	100	64.120	ENSOGAG00000007515	VARS	100	63.874	Otolemur_garnettii
ENSSLDG00000025316	vars	50	63.240	ENSOARG00000004625	-	91	63.101	Ovis_aries
ENSSLDG00000025316	vars	100	64.158	ENSPPAG00000034012	VARS	100	64.396	Pan_paniscus
ENSSLDG00000025316	vars	100	64.856	ENSPPRG00000014855	VARS	100	64.861	Panthera_pardus
ENSSLDG00000025316	vars	85	68.893	ENSPTIG00000010462	VARS	97	66.264	Panthera_tigris_altaica
ENSSLDG00000025316	vars	100	64.081	ENSPTRG00000017985	VARS	100	64.319	Pan_troglodytes
ENSSLDG00000025316	vars	100	62.692	ENSPANG00000014565	VARS	100	63.000	Papio_anubis
ENSSLDG00000025316	vars	100	81.854	ENSPKIG00000016304	vars	100	81.854	Paramormyrops_kingsleyae
ENSSLDG00000025316	vars	100	85.121	ENSPMGG00000023909	vars	100	85.121	Periophthalmus_magnuspinnatus
ENSSLDG00000025316	vars	100	64.158	ENSPEMG00000006639	Vars	100	64.396	Peromyscus_maniculatus_bairdii
ENSSLDG00000025316	vars	100	64.396	ENSPCIG00000018553	VARS	100	64.474	Phascolarctos_cinereus
ENSSLDG00000025316	vars	100	90.376	ENSPFOG00000015690	vars	100	90.141	Poecilia_formosa
ENSSLDG00000025316	vars	100	90.219	ENSPLAG00000009590	vars	100	89.984	Poecilia_latipinna
ENSSLDG00000025316	vars	100	90.297	ENSPMEG00000004708	vars	100	90.063	Poecilia_mexicana
ENSSLDG00000025316	vars	100	85.603	ENSPREG00000013264	vars	100	85.603	Poecilia_reticulata
ENSSLDG00000025316	vars	100	62.762	ENSPPYG00000016460	VARS	100	62.597	Pongo_abelii
ENSSLDG00000025316	vars	86	66.075	ENSPCAG00000013565	VARS	86	66.075	Procavia_capensis
ENSSLDG00000025316	vars	100	64.264	ENSPCOG00000010942	VARS	100	64.424	Propithecus_coquereli
ENSSLDG00000025316	vars	100	62.355	ENSPVAG00000012403	VARS	100	62.229	Pteropus_vampyrus
ENSSLDG00000025316	vars	100	92.645	ENSPNYG00000022511	vars	100	92.645	Pundamilia_nyererei
ENSSLDG00000025316	vars	100	84.621	ENSPNAG00000020962	vars	100	84.699	Pygocentrus_nattereri
ENSSLDG00000025316	vars	100	64.236	ENSRNOG00000000867	Vars	100	64.142	Rattus_norvegicus
ENSSLDG00000025316	vars	100	64.241	ENSRBIG00000041669	VARS	100	64.551	Rhinopithecus_bieti
ENSSLDG00000025316	vars	100	64.241	ENSRROG00000045490	VARS	100	64.551	Rhinopithecus_roxellana
ENSSLDG00000025316	vars	100	63.848	ENSSBOG00000035402	VARS	100	64.087	Saimiri_boliviensis_boliviensis
ENSSLDG00000025316	vars	100	63.333	ENSSHAG00000006937	VARS	100	64.012	Sarcophilus_harrisii
ENSSLDG00000025316	vars	100	80.904	ENSSFOG00015014272	vars	100	80.904	Scleropages_formosus
ENSSLDG00000025316	vars	100	91.934	ENSSMAG00000009596	vars	99	91.934	Scophthalmus_maximus
ENSSLDG00000025316	vars	100	98.512	ENSSDUG00000014177	vars	100	98.512	Seriola_dumerili
ENSSLDG00000025316	vars	100	92.482	ENSSPAG00000017068	vars	100	92.247	Stegastes_partitus
ENSSLDG00000025316	vars	100	63.721	ENSSSCG00000038950	VARS	100	63.882	Sus_scrofa
ENSSLDG00000025316	vars	82	82.000	ENSTRUG00000012307	vars	98	81.784	Takifugu_rubripes
ENSSLDG00000025316	vars	100	87.177	ENSTNIG00000008011	vars	100	87.099	Tetraodon_nigroviridis
ENSSLDG00000025316	vars	100	58.540	ENSTTRG00000014128	VARS	100	58.463	Tursiops_truncatus
ENSSLDG00000025316	vars	100	62.693	ENSUAMG00000010424	VARS	100	62.733	Ursus_americanus
ENSSLDG00000025316	vars	100	59.253	ENSUMAG00000013486	VARS	100	59.331	Ursus_maritimus
ENSSLDG00000025316	vars	100	64.601	ENSVVUG00000021323	VARS	100	64.269	Vulpes_vulpes
ENSSLDG00000025316	vars	100	64.186	ENSXETG00000024076	vars	100	64.093	Xenopus_tropicalis
ENSSLDG00000025316	vars	100	87.950	ENSXCOG00000019172	vars	100	87.872	Xiphophorus_couchianus
ENSSLDG00000025316	vars	100	90.454	ENSXMAG00000010927	vars	100	90.219	Xiphophorus_maculatus