EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000000218 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 4945 bases
Position: chr8:4691860-4696804
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000000346	PPR	PF01535.20	1.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000000351	-	1848	-	ENSSMAP00000000346	615 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000000218's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000000218's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000000218	ptcd1	94	46.440	ENSG00000106246	PTCD1	87	46.141	Homo_sapiens
ENSSMAG00000000218	ptcd1	94	46.440	ENSG00000248919	ATP5MF-PTCD1	81	46.141	Homo_sapiens
ENSSMAG00000000218	ptcd1	87	65.823	ENSAPOG00000010679	ptcd1	85	65.642	Acanthochromis_polyacanthus
ENSSMAG00000000218	ptcd1	96	45.182	ENSAMEG00000006224	-	82	46.474	Ailuropoda_melanoleuca
ENSSMAG00000000218	ptcd1	92	72.712	ENSACIG00000017861	ptcd1	85	72.318	Amphilophus_citrinellus
ENSSMAG00000000218	ptcd1	99	64.623	ENSAOCG00000020741	-	88	64.308	Amphiprion_ocellaris
ENSSMAG00000000218	ptcd1	87	66.847	ENSAOCG00000022617	ptcd1	82	66.486	Amphiprion_ocellaris
ENSSMAG00000000218	ptcd1	99	64.465	ENSAPEG00000022632	ptcd1	88	64.151	Amphiprion_percula
ENSSMAG00000000218	ptcd1	99	69.316	ENSATEG00000007016	ptcd1	88	69.316	Anabas_testudineus
ENSSMAG00000000218	ptcd1	95	47.334	ENSAPLG00000006862	-	96	47.011	Anas_platyrhynchos
ENSSMAG00000000218	ptcd1	91	49.327	ENSACAG00000012871	-	78	48.990	Anolis_carolinensis
ENSSMAG00000000218	ptcd1	91	47.288	ENSANAG00000035790	-	86	46.970	Aotus_nancymaae
ENSSMAG00000000218	ptcd1	99	68.421	ENSACLG00000002824	ptcd1	87	68.421	Astatotilapia_calliptera
ENSSMAG00000000218	ptcd1	91	50.325	ENSAMXG00000037292	ptcd1	86	50.487	Astyanax_mexicanus
ENSSMAG00000000218	ptcd1	95	46.377	ENSBTAG00000020440	-	76	46.388	Bos_taurus
ENSSMAG00000000218	ptcd1	93	47.360	ENSCJAG00000015815	-	84	48.061	Callithrix_jacchus
ENSSMAG00000000218	ptcd1	91	47.723	ENSCAFG00000015055	-	77	47.386	Canis_familiaris
ENSSMAG00000000218	ptcd1	91	47.723	ENSCAFG00020014480	-	77	47.386	Canis_lupus_dingo
ENSSMAG00000000218	ptcd1	95	47.106	ENSCHIG00000027000	-	86	47.115	Capra_hircus
ENSSMAG00000000218	ptcd1	95	44.805	ENSTSYG00000029495	-	88	44.516	Carlito_syrichta
ENSSMAG00000000218	ptcd1	94	45.572	ENSCAPG00000014660	-	94	45.280	Cavia_aperea
ENSSMAG00000000218	ptcd1	94	46.216	ENSCPOG00000001780	-	87	45.920	Cavia_porcellus
ENSSMAG00000000218	ptcd1	93	46.205	ENSCCAG00000034025	-	84	46.880	Cebus_capucinus
ENSSMAG00000000218	ptcd1	91	48.644	ENSCATG00000040859	-	83	48.485	Cercocebus_atys
ENSSMAG00000000218	ptcd1	93	46.330	ENSCLAG00000006354	-	87	45.981	Chinchilla_lanigera
ENSSMAG00000000218	ptcd1	86	48.307	ENSCSAG00000017794	-	82	48.142	Chlorocebus_sabaeus
ENSSMAG00000000218	ptcd1	95	45.666	ENSCPBG00000020866	-	86	45.271	Chrysemys_picta_bellii
ENSSMAG00000000218	ptcd1	94	46.557	ENSCANG00000023441	-	84	47.555	Colobus_angolensis_palliatus
ENSSMAG00000000218	ptcd1	94	46.365	ENSCGRG00001023686	Ptcd1	86	46.365	Cricetulus_griseus_chok1gshd
ENSSMAG00000000218	ptcd1	94	46.365	ENSCGRG00000015031	Ptcd1	86	46.365	Cricetulus_griseus_crigri
ENSSMAG00000000218	ptcd1	99	63.391	ENSCSEG00000002378	ptcd1	89	63.391	Cynoglossus_semilaevis
ENSSMAG00000000218	ptcd1	99	67.512	ENSCVAG00000015826	ptcd1	89	67.353	Cyprinodon_variegatus
ENSSMAG00000000218	ptcd1	92	69.310	ENSCVAG00000003621	ptcd1	87	69.138	Cyprinodon_variegatus
ENSSMAG00000000218	ptcd1	91	52.020	ENSDARG00000076176	ptcd1	84	52.027	Danio_rerio
ENSSMAG00000000218	ptcd1	91	46.912	ENSDNOG00000009957	-	83	46.823	Dasypus_novemcinctus
ENSSMAG00000000218	ptcd1	94	46.179	ENSDORG00000000740	Ptcd1	89	46.042	Dipodomys_ordii
ENSSMAG00000000218	ptcd1	90	37.420	ENSEBUG00000014515	ptcd1	93	36.775	Eptatretus_burgeri
ENSSMAG00000000218	ptcd1	95	47.106	ENSEASG00005002480	-	87	46.656	Equus_asinus_asinus
ENSSMAG00000000218	ptcd1	95	46.785	ENSECAG00000016617	-	87	46.497	Equus_caballus
ENSSMAG00000000218	ptcd1	96	54.518	ENSELUG00000016517	ptcd1	87	53.905	Esox_lucius
ENSSMAG00000000218	ptcd1	95	45.498	ENSFCAG00000015069	-	87	45.498	Felis_catus
ENSSMAG00000000218	ptcd1	93	46.338	ENSFALG00000013803	-	85	46.338	Ficedula_albicollis
ENSSMAG00000000218	ptcd1	94	46.117	ENSFDAG00000006393	-	87	45.981	Fukomys_damarensis
ENSSMAG00000000218	ptcd1	87	64.811	ENSFHEG00000012491	ptcd1	96	64.811	Fundulus_heteroclitus
ENSSMAG00000000218	ptcd1	98	57.937	ENSGMOG00000007639	ptcd1	99	57.302	Gadus_morhua
ENSSMAG00000000218	ptcd1	97	45.286	ENSGALG00000004711	-	88	45.131	Gallus_gallus
ENSSMAG00000000218	ptcd1	99	64.476	ENSGAFG00000013175	ptcd1	89	64.476	Gambusia_affinis
ENSSMAG00000000218	ptcd1	99	66.614	ENSGACG00000016607	ptcd1	97	67.035	Gasterosteus_aculeatus
ENSSMAG00000000218	ptcd1	86	46.786	ENSGAGG00000021832	-	84	46.575	Gopherus_agassizii
ENSSMAG00000000218	ptcd1	94	45.907	ENSGGOG00000015123	-	87	45.614	Gorilla_gorilla
ENSSMAG00000000218	ptcd1	99	68.320	ENSHBUG00000018275	ptcd1	87	68.320	Haplochromis_burtoni
ENSSMAG00000000218	ptcd1	94	47.386	ENSHGLG00000017621	-	87	47.240	Heterocephalus_glaber_female
ENSSMAG00000000218	ptcd1	94	47.386	ENSHGLG00100007218	-	87	47.240	Heterocephalus_glaber_male
ENSSMAG00000000218	ptcd1	99	56.340	ENSHCOG00000010784	ptcd1	88	56.822	Hippocampus_comes
ENSSMAG00000000218	ptcd1	95	46.104	ENSSTOG00000001682	-	87	46.104	Ictidomys_tridecemlineatus
ENSSMAG00000000218	ptcd1	94	46.493	ENSJJAG00000000319	Ptcd1	88	46.743	Jaculus_jaculus
ENSSMAG00000000218	ptcd1	99	66.294	ENSKMAG00000008708	ptcd1	88	66.294	Kryptolebias_marmoratus
ENSSMAG00000000218	ptcd1	99	66.199	ENSLBEG00000008061	ptcd1	87	66.873	Labrus_bergylta
ENSSMAG00000000218	ptcd1	94	47.720	ENSLACG00000011172	ptcd1	82	48.644	Latimeria_chalumnae
ENSSMAG00000000218	ptcd1	93	51.192	ENSLOCG00000004833	ptcd1	94	50.166	Lepisosteus_oculatus
ENSSMAG00000000218	ptcd1	94	45.411	ENSLAFG00000002588	-	86	45.250	Loxodonta_africana
ENSSMAG00000000218	ptcd1	91	47.811	ENSMFAG00000041324	-	83	48.485	Macaca_fascicularis
ENSSMAG00000000218	ptcd1	91	47.643	ENSMMUG00000030408	-	83	48.316	Macaca_mulatta
ENSSMAG00000000218	ptcd1	91	47.811	ENSMNEG00000043786	-	83	48.485	Macaca_nemestrina
ENSSMAG00000000218	ptcd1	91	36.159	ENSMLEG00000031179	-	81	42.734	Mandrillus_leucophaeus
ENSSMAG00000000218	ptcd1	99	68.730	ENSMAMG00000007623	ptcd1	87	68.730	Mastacembelus_armatus
ENSSMAG00000000218	ptcd1	99	68.421	ENSMZEG00005012722	ptcd1	87	68.421	Maylandia_zebra
ENSSMAG00000000218	ptcd1	91	47.927	ENSMGAG00000004211	-	77	48.241	Meleagris_gallopavo
ENSSMAG00000000218	ptcd1	93	44.901	ENSMICG00000017428	-	86	44.878	Microcebus_murinus
ENSSMAG00000000218	ptcd1	98	67.675	ENSMMOG00000020243	ptcd1	90	68.243	Mola_mola
ENSSMAG00000000218	ptcd1	97	42.968	ENSMODG00000001350	-	85	42.813	Monodelphis_domestica
ENSSMAG00000000218	ptcd1	99	70.570	ENSMALG00000018442	ptcd1	87	70.774	Monopterus_albus
ENSSMAG00000000218	ptcd1	94	44.695	MGP_CAROLIEiJ_G0028011	Ptcd1	87	44.695	Mus_caroli
ENSSMAG00000000218	ptcd1	94	44.984	ENSMUSG00000029624	Ptcd1	87	44.822	Mus_musculus
ENSSMAG00000000218	ptcd1	94	45.928	MGP_PahariEiJ_G0024580	Ptcd1	86	45.928	Mus_pahari
ENSSMAG00000000218	ptcd1	94	44.968	MGP_SPRETEiJ_G0029012	Ptcd1	87	44.534	Mus_spretus
ENSSMAG00000000218	ptcd1	95	45.920	ENSMPUG00000016518	-	87	46.006	Mustela_putorius_furo
ENSSMAG00000000218	ptcd1	93	47.954	ENSMLUG00000010994	-	80	47.720	Myotis_lucifugus
ENSSMAG00000000218	ptcd1	98	67.594	ENSNBRG00000010079	ptcd1	86	67.791	Neolamprologus_brichardi
ENSSMAG00000000218	ptcd1	82	46.481	ENSNLEG00000011060	-	90	46.481	Nomascus_leucogenys
ENSSMAG00000000218	ptcd1	94	44.426	ENSMEUG00000006930	-	87	44.715	Notamacropus_eugenii
ENSSMAG00000000218	ptcd1	84	58.120	ENSOPRG00000013647	-	76	58.120	Ochotona_princeps
ENSSMAG00000000218	ptcd1	96	65.898	ENSONIG00000003168	ptcd1	100	65.898	Oreochromis_niloticus
ENSSMAG00000000218	ptcd1	86	44.991	ENSOANG00000007728	-	73	45.009	Ornithorhynchus_anatinus
ENSSMAG00000000218	ptcd1	94	45.336	ENSOCUG00000010584	-	82	46.543	Oryctolagus_cuniculus
ENSSMAG00000000218	ptcd1	95	66.000	ENSORLG00000009275	ptcd1	87	66.000	Oryzias_latipes
ENSSMAG00000000218	ptcd1	95	66.167	ENSORLG00020000988	ptcd1	87	66.167	Oryzias_latipes_hni
ENSSMAG00000000218	ptcd1	95	65.333	ENSORLG00015010557	ptcd1	87	65.333	Oryzias_latipes_hsok
ENSSMAG00000000218	ptcd1	93	65.709	ENSOMEG00000020627	ptcd1	87	65.709	Oryzias_melastigma
ENSSMAG00000000218	ptcd1	93	45.336	ENSOGAG00000010877	-	87	44.951	Otolemur_garnettii
ENSSMAG00000000218	ptcd1	95	43.182	ENSOARG00000018676	-	87	43.204	Ovis_aries
ENSSMAG00000000218	ptcd1	94	46.117	ENSPPAG00000036024	-	87	45.968	Pan_paniscus
ENSSMAG00000000218	ptcd1	95	45.614	ENSPPRG00000003478	-	87	45.295	Panthera_pardus
ENSSMAG00000000218	ptcd1	94	46.440	ENSPTRG00000019452	-	87	46.290	Pan_troglodytes
ENSSMAG00000000218	ptcd1	91	48.814	ENSPANG00000016730	-	83	48.653	Papio_anubis
ENSSMAG00000000218	ptcd1	96	48.544	ENSPKIG00000014215	ptcd1	89	48.220	Paramormyrops_kingsleyae
ENSSMAG00000000218	ptcd1	92	44.371	ENSPSIG00000011184	-	98	45.286	Pelodiscus_sinensis
ENSSMAG00000000218	ptcd1	78	41.412	ENSPMAG00000009667	ptcd1	100	41.412	Petromyzon_marinus
ENSSMAG00000000218	ptcd1	91	43.586	ENSPCIG00000024778	-	81	43.750	Phascolarctos_cinereus
ENSSMAG00000000218	ptcd1	99	64.734	ENSPFOG00000004458	ptcd1	89	65.135	Poecilia_formosa
ENSSMAG00000000218	ptcd1	99	65.197	ENSPLAG00000011051	ptcd1	89	65.714	Poecilia_latipinna
ENSSMAG00000000218	ptcd1	99	65.354	ENSPMEG00000020547	ptcd1	89	65.039	Poecilia_mexicana
ENSSMAG00000000218	ptcd1	99	64.184	ENSPREG00000000059	ptcd1	89	64.342	Poecilia_reticulata
ENSSMAG00000000218	ptcd1	95	46.774	ENSPPYG00000017377	-	92	46.613	Pongo_abelii
ENSSMAG00000000218	ptcd1	84	60.656	ENSPCAG00000001852	-	84	59.504	Procavia_capensis
ENSSMAG00000000218	ptcd1	93	47.039	ENSPCOG00000018596	-	86	46.895	Propithecus_coquereli
ENSSMAG00000000218	ptcd1	56	55.720	ENSPVAG00000007529	-	54	55.720	Pteropus_vampyrus
ENSSMAG00000000218	ptcd1	99	68.480	ENSPNYG00000019993	ptcd1	87	68.480	Pundamilia_nyererei
ENSSMAG00000000218	ptcd1	91	52.542	ENSPNAG00000014931	ptcd1	88	50.891	Pygocentrus_nattereri
ENSSMAG00000000218	ptcd1	91	47.980	ENSRNOG00000000987	Ptcd1	85	47.492	Rattus_norvegicus
ENSSMAG00000000218	ptcd1	94	47.049	ENSRBIG00000043393	-	84	48.061	Rhinopithecus_bieti
ENSSMAG00000000218	ptcd1	94	47.049	ENSRROG00000036420	-	84	48.061	Rhinopithecus_roxellana
ENSSMAG00000000218	ptcd1	93	46.612	ENSSBOG00000024114	-	84	47.297	Saimiri_boliviensis_boliviensis
ENSSMAG00000000218	ptcd1	91	45.025	ENSSHAG00000011376	-	89	44.857	Sarcophilus_harrisii
ENSSMAG00000000218	ptcd1	91	52.080	ENSSFOG00015007909	ptcd1	80	51.913	Scleropages_formosus
ENSSMAG00000000218	ptcd1	94	75.597	ENSSDUG00000015671	ptcd1	86	75.342	Seriola_dumerili
ENSSMAG00000000218	ptcd1	94	75.980	ENSSLDG00000014261	ptcd1	86	75.726	Seriola_lalandi_dorsalis
ENSSMAG00000000218	ptcd1	96	44.118	ENSSPUG00000003540	-	85	44.118	Sphenodon_punctatus
ENSSMAG00000000218	ptcd1	99	67.707	ENSSPAG00000011049	ptcd1	88	67.707	Stegastes_partitus
ENSSMAG00000000218	ptcd1	94	47.463	ENSSSCG00000007622	-	91	46.667	Sus_scrofa
ENSSMAG00000000218	ptcd1	93	46.116	ENSTGUG00000007563	-	98	46.787	Taeniopygia_guttata
ENSSMAG00000000218	ptcd1	99	64.094	ENSTRUG00000013471	ptcd1	86	64.094	Takifugu_rubripes
ENSSMAG00000000218	ptcd1	95	63.861	ENSTNIG00000008271	ptcd1	87	63.861	Tetraodon_nigroviridis
ENSSMAG00000000218	ptcd1	95	45.048	ENSTBEG00000011021	-	87	45.265	Tupaia_belangeri
ENSSMAG00000000218	ptcd1	95	47.078	ENSTTRG00000003006	-	87	46.591	Tursiops_truncatus
ENSSMAG00000000218	ptcd1	95	46.743	ENSUAMG00000008049	-	87	46.743	Ursus_americanus
ENSSMAG00000000218	ptcd1	91	47.739	ENSVVUG00000008836	-	84	47.404	Vulpes_vulpes
ENSSMAG00000000218	ptcd1	91	45.578	ENSXETG00000009891	ptcd1	84	45.408	Xenopus_tropicalis
ENSSMAG00000000218	ptcd1	99	65.877	ENSXMAG00000015540	ptcd1	89	66.035	Xiphophorus_maculatus