EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000000685 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 11988 bases
Position: chr8:5221656-5233643
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000001111	RNA_bind	PF08675.11	6.5e-33	1	1
ENSSMAP00000001094	RNA_bind	PF08675.11	8.9e-33	1	1
ENSSMAP00000001094	CAF1	PF04857.20	2e-89	1	1
ENSSMAP00000001111	CAF1	PF04857.20	4.6e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000001135	-	1839	-	ENSSMAP00000001111	612 (aa)	-	-
ENSSMAT00000001118	-	6152	-	ENSSMAP00000001094	698 (aa)	-	A0A2U9BNZ1

Gene Model

Click here to download ENSSMAG00000000685's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000000685's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000000685	parn	100	63.287	ENSG00000140694	PARN	99	69.338	Homo_sapiens
ENSSMAG00000000685	parn	100	62.154	ENSAMEG00000011208	PARN	100	61.846	Ailuropoda_melanoleuca
ENSSMAG00000000685	parn	91	82.143	ENSACIG00000000619	parn	99	80.438	Amphilophus_citrinellus
ENSSMAG00000000685	parn	100	85.551	ENSAOCG00000003465	parn	100	85.265	Amphiprion_ocellaris
ENSSMAG00000000685	parn	90	78.495	ENSAPEG00000010661	parn	94	90.041	Amphiprion_percula
ENSSMAG00000000685	parn	100	86.409	ENSATEG00000004661	parn	100	86.266	Anabas_testudineus
ENSSMAG00000000685	parn	90	68.683	ENSAPLG00000013914	PARN	90	71.306	Anas_platyrhynchos
ENSSMAG00000000685	parn	92	69.164	ENSACAG00000004973	PARN	90	72.402	Anolis_carolinensis
ENSSMAG00000000685	parn	100	63.150	ENSANAG00000031516	PARN	91	76.271	Aotus_nancymaae
ENSSMAG00000000685	parn	100	84.120	ENSACLG00000004742	parn	100	83.548	Astatotilapia_calliptera
ENSSMAG00000000685	parn	100	69.844	ENSAMXG00000012390	parn	97	75.503	Astyanax_mexicanus
ENSSMAG00000000685	parn	100	60.534	ENSBTAG00000018097	PARN	81	76.421	Bos_taurus
ENSSMAG00000000685	parn	100	61.927	ENSCJAG00000015866	PARN	91	76.271	Callithrix_jacchus
ENSSMAG00000000685	parn	100	62.404	ENSCAFG00000018795	PARN	83	75.560	Canis_familiaris
ENSSMAG00000000685	parn	100	62.712	ENSCAFG00020024126	PARN	83	75.933	Canis_lupus_dingo
ENSSMAG00000000685	parn	87	71.402	ENSCHIG00000018143	PARN	83	76.306	Capra_hircus
ENSSMAG00000000685	parn	76	45.175	ENSCAPG00000007984	PARN	78	49.480	Cavia_aperea
ENSSMAG00000000685	parn	100	61.728	ENSCPOG00000002263	PARN	90	70.984	Cavia_porcellus
ENSSMAG00000000685	parn	87	72.140	ENSCCAG00000030367	PARN	91	76.271	Cebus_capucinus
ENSSMAG00000000685	parn	87	71.587	ENSCATG00000041368	PARN	95	76.493	Cercocebus_atys
ENSSMAG00000000685	parn	100	62.809	ENSCLAG00000015406	PARN	98	68.297	Chinchilla_lanigera
ENSSMAG00000000685	parn	87	71.956	ENSCSAG00000008142	PARN	95	69.839	Chlorocebus_sabaeus
ENSSMAG00000000685	parn	99	48.754	ENSCHOG00000007014	PARN	100	48.598	Choloepus_hoffmanni
ENSSMAG00000000685	parn	82	68.411	ENSCPBG00000006609	PARN	89	72.691	Chrysemys_picta_bellii
ENSSMAG00000000685	parn	83	40.445	ENSCING00000010142	-	99	43.258	Ciona_intestinalis
ENSSMAG00000000685	parn	87	60.901	ENSCANG00000028849	-	94	69.697	Colobus_angolensis_palliatus
ENSSMAG00000000685	parn	100	61.860	ENSCGRG00001012096	Parn	100	62.461	Cricetulus_griseus_chok1gshd
ENSSMAG00000000685	parn	100	61.860	ENSCGRG00000004939	Parn	100	62.461	Cricetulus_griseus_crigri
ENSSMAG00000000685	parn	100	83.429	ENSCSEG00000002064	parn	100	83.143	Cynoglossus_semilaevis
ENSSMAG00000000685	parn	100	80.401	ENSCVAG00000014848	parn	100	80.114	Cyprinodon_variegatus
ENSSMAG00000000685	parn	90	71.326	ENSDARG00000102634	parn	96	69.702	Danio_rerio
ENSSMAG00000000685	parn	87	71.033	ENSDNOG00000000833	PARN	94	75.933	Dasypus_novemcinctus
ENSSMAG00000000685	parn	67	71.212	ENSETEG00000014828	-	69	71.212	Echinops_telfairi
ENSSMAG00000000685	parn	100	62.250	ENSEASG00005011400	PARN	100	62.404	Equus_asinus_asinus
ENSSMAG00000000685	parn	100	62.404	ENSECAG00000017792	PARN	100	62.558	Equus_caballus
ENSSMAG00000000685	parn	73	61.261	ENSEEUG00000010370	PARN	83	61.261	Erinaceus_europaeus
ENSSMAG00000000685	parn	100	74.574	ENSELUG00000013139	parn	90	74.006	Esox_lucius
ENSSMAG00000000685	parn	100	62.866	ENSFCAG00000044961	PARN	83	76.119	Felis_catus
ENSSMAG00000000685	parn	91	67.788	ENSFALG00000003911	PARN	89	71.157	Ficedula_albicollis
ENSSMAG00000000685	parn	100	62.191	ENSFDAG00000009234	PARN	100	61.852	Fukomys_damarensis
ENSSMAG00000000685	parn	90	73.192	ENSFHEG00000013738	parn	92	84.746	Fundulus_heteroclitus
ENSSMAG00000000685	parn	90	79.533	ENSGMOG00000003231	parn	99	84.574	Gadus_morhua
ENSSMAG00000000685	parn	92	67.888	ENSGALG00000003091	PARN	99	67.834	Gallus_gallus
ENSSMAG00000000685	parn	100	80.456	ENSGAFG00000011061	parn	100	79.886	Gambusia_affinis
ENSSMAG00000000685	parn	100	75.714	ENSGACG00000019501	parn	99	82.143	Gasterosteus_aculeatus
ENSSMAG00000000685	parn	87	71.771	ENSGGOG00000025224	PARN	98	69.697	Gorilla_gorilla
ENSSMAG00000000685	parn	100	84.835	ENSHBUG00000017906	parn	100	84.406	Haplochromis_burtoni
ENSSMAG00000000685	parn	100	58.529	ENSHGLG00000010886	PARN	90	71.157	Heterocephalus_glaber_female
ENSSMAG00000000685	parn	100	58.529	ENSHGLG00100014659	PARN	90	71.157	Heterocephalus_glaber_male
ENSSMAG00000000685	parn	99	70.962	ENSHCOG00000008683	parn	94	82.084	Hippocampus_comes
ENSSMAG00000000685	parn	93	62.557	ENSIPUG00000012401	parn	100	59.433	Ictalurus_punctatus
ENSSMAG00000000685	parn	100	62.791	ENSSTOG00000007519	PARN	100	62.384	Ictidomys_tridecemlineatus
ENSSMAG00000000685	parn	100	63.339	ENSJJAG00000023049	Parn	98	68.277	Jaculus_jaculus
ENSSMAG00000000685	parn	100	82.833	ENSKMAG00000009462	parn	100	82.690	Kryptolebias_marmoratus
ENSSMAG00000000685	parn	91	88.346	ENSLBEG00000009167	parn	99	87.797	Labrus_bergylta
ENSSMAG00000000685	parn	82	68.431	ENSLACG00000004207	PARN	100	72.406	Latimeria_chalumnae
ENSSMAG00000000685	parn	100	69.460	ENSLOCG00000000715	parn	100	68.265	Lepisosteus_oculatus
ENSSMAG00000000685	parn	100	62.830	ENSLAFG00000015036	PARN	84	76.119	Loxodonta_africana
ENSSMAG00000000685	parn	87	69.373	ENSMFAG00000044852	PARN	95	69.231	Macaca_fascicularis
ENSSMAG00000000685	parn	87	71.956	ENSMMUG00000018849	PARN	95	69.839	Macaca_mulatta
ENSSMAG00000000685	parn	87	71.956	ENSMNEG00000045108	PARN	95	69.839	Macaca_nemestrina
ENSSMAG00000000685	parn	87	71.771	ENSMLEG00000031743	PARN	95	69.677	Mandrillus_leucophaeus
ENSSMAG00000000685	parn	100	87.000	ENSMAMG00000006939	parn	100	87.000	Mastacembelus_armatus
ENSSMAG00000000685	parn	100	84.263	ENSMZEG00005013590	parn	100	83.691	Maylandia_zebra
ENSSMAG00000000685	parn	90	66.667	ENSMGAG00000001004	PARN	97	66.558	Meleagris_gallopavo
ENSSMAG00000000685	parn	100	58.410	ENSMAUG00000008025	Parn	100	58.257	Mesocricetus_auratus
ENSSMAG00000000685	parn	100	63.020	ENSMICG00000016053	PARN	100	68.182	Microcebus_murinus
ENSSMAG00000000685	parn	81	70.459	ENSMOCG00000022211	Parn	100	75.758	Microtus_ochrogaster
ENSSMAG00000000685	parn	100	76.575	ENSMMOG00000011333	parn	90	87.161	Mola_mola
ENSSMAG00000000685	parn	81	72.366	ENSMODG00000004915	PARN	99	77.666	Monodelphis_domestica
ENSSMAG00000000685	parn	96	86.716	ENSMALG00000019426	parn	94	90.072	Monopterus_albus
ENSSMAG00000000685	parn	100	61.755	MGP_CAROLIEiJ_G0020466	Parn	100	61.912	Mus_caroli
ENSSMAG00000000685	parn	100	60.748	ENSMUSG00000022685	Parn	100	70.732	Mus_musculus
ENSSMAG00000000685	parn	100	61.526	MGP_PahariEiJ_G0016172	Parn	100	61.431	Mus_pahari
ENSSMAG00000000685	parn	100	61.059	MGP_SPRETEiJ_G0021361	Parn	100	61.215	Mus_spretus
ENSSMAG00000000685	parn	100	62.558	ENSMPUG00000014464	PARN	96	69.355	Mustela_putorius_furo
ENSSMAG00000000685	parn	80	72.056	ENSMLUG00000005414	PARN	100	76.364	Myotis_lucifugus
ENSSMAG00000000685	parn	100	76.414	ENSNBRG00000006805	parn	93	86.618	Neolamprologus_brichardi
ENSSMAG00000000685	parn	87	71.956	ENSNLEG00000010241	PARN	91	76.271	Nomascus_leucogenys
ENSSMAG00000000685	parn	80	61.667	ENSMEUG00000008178	-	74	61.667	Notamacropus_eugenii
ENSSMAG00000000685	parn	99	59.688	ENSOPRG00000012187	PARN	90	66.782	Ochotona_princeps
ENSSMAG00000000685	parn	100	58.529	ENSODEG00000001617	PARN	100	58.411	Octodon_degus
ENSSMAG00000000685	parn	100	85.265	ENSONIG00000000151	parn	100	84.835	Oreochromis_niloticus
ENSSMAG00000000685	parn	86	71.455	ENSOCUG00000000322	PARN	91	71.111	Oryctolagus_cuniculus
ENSSMAG00000000685	parn	100	78.367	ENSORLG00020010313	parn	100	78.541	Oryzias_latipes_hni
ENSSMAG00000000685	parn	100	78.080	ENSORLG00015000300	parn	100	78.255	Oryzias_latipes_hsok
ENSSMAG00000000685	parn	100	77.857	ENSOMEG00000019555	parn	100	77.429	Oryzias_melastigma
ENSSMAG00000000685	parn	80	70.518	ENSOGAG00000014626	PARN	100	76.008	Otolemur_garnettii
ENSSMAG00000000685	parn	80	72.455	ENSOARG00000007574	PARN	100	77.778	Ovis_aries
ENSSMAG00000000685	parn	100	63.134	ENSPPAG00000031438	PARN	91	76.271	Pan_paniscus
ENSSMAG00000000685	parn	100	62.866	ENSPPRG00000018583	PARN	83	76.119	Panthera_pardus
ENSSMAG00000000685	parn	100	62.866	ENSPTIG00000012135	PARN	83	76.119	Panthera_tigris_altaica
ENSSMAG00000000685	parn	100	63.134	ENSPTRG00000007792	PARN	91	76.271	Pan_troglodytes
ENSSMAG00000000685	parn	87	70.841	ENSPANG00000020099	PARN	94	69.697	Papio_anubis
ENSSMAG00000000685	parn	99	67.989	ENSPKIG00000022807	parn	96	68.272	Paramormyrops_kingsleyae
ENSSMAG00000000685	parn	91	69.284	ENSPSIG00000014804	PARN	90	72.384	Pelodiscus_sinensis
ENSSMAG00000000685	parn	91	78.826	ENSPMGG00000014431	parn	85	78.029	Periophthalmus_magnuspinnatus
ENSSMAG00000000685	parn	100	60.592	ENSPEMG00000018439	Parn	100	60.436	Peromyscus_maniculatus_bairdii
ENSSMAG00000000685	parn	88	61.538	ENSPMAG00000003956	parn	99	65.556	Petromyzon_marinus
ENSSMAG00000000685	parn	69	66.820	ENSPCIG00000001259	PARN	91	76.271	Phascolarctos_cinereus
ENSSMAG00000000685	parn	100	80.544	ENSPFOG00000012823	parn	100	80.544	Poecilia_formosa
ENSSMAG00000000685	parn	100	80.687	ENSPLAG00000006395	parn	100	80.687	Poecilia_latipinna
ENSSMAG00000000685	parn	100	80.687	ENSPMEG00000007711	parn	100	80.687	Poecilia_mexicana
ENSSMAG00000000685	parn	100	80.687	ENSPREG00000000147	parn	100	80.687	Poecilia_reticulata
ENSSMAG00000000685	parn	100	62.787	ENSPPYG00000007123	PARN	95	69.132	Pongo_abelii
ENSSMAG00000000685	parn	82	61.297	ENSPCAG00000001741	PARN	82	66.402	Procavia_capensis
ENSSMAG00000000685	parn	100	62.866	ENSPCOG00000019292	PARN	100	68.182	Propithecus_coquereli
ENSSMAG00000000685	parn	86	68.037	ENSPVAG00000002547	PARN	83	72.968	Pteropus_vampyrus
ENSSMAG00000000685	parn	100	84.549	ENSPNYG00000006835	parn	100	84.120	Pundamilia_nyererei
ENSSMAG00000000685	parn	93	68.702	ENSPNAG00000018905	parn	93	74.655	Pygocentrus_nattereri
ENSSMAG00000000685	parn	100	60.152	ENSRNOG00000002912	Parn	96	74.490	Rattus_norvegicus
ENSSMAG00000000685	parn	100	61.774	ENSSBOG00000034726	PARN	94	69.697	Saimiri_boliviensis_boliviensis
ENSSMAG00000000685	parn	68	69.575	ENSSHAG00000008493	PARN	93	75.837	Sarcophilus_harrisii
ENSSMAG00000000685	parn	100	69.362	ENSSFOG00015014165	parn	98	73.957	Scleropages_formosus
ENSSMAG00000000685	parn	100	88.730	ENSSDUG00000014555	parn	100	88.302	Seriola_dumerili
ENSSMAG00000000685	parn	71	71.202	ENSSARG00000014339	PARN	75	77.241	Sorex_araneus
ENSSMAG00000000685	parn	92	68.706	ENSSPUG00000007719	PARN	92	70.707	Sphenodon_punctatus
ENSSMAG00000000685	parn	100	86.695	ENSSPAG00000007095	parn	100	86.266	Stegastes_partitus
ENSSMAG00000000685	parn	87	71.033	ENSSSCG00000007878	PARN	80	71.355	Sus_scrofa
ENSSMAG00000000685	parn	91	67.845	ENSTGUG00000004971	PARN	96	68.285	Taeniopygia_guttata
ENSSMAG00000000685	parn	100	74.882	ENSTNIG00000008252	parn	90	88.246	Tetraodon_nigroviridis
ENSSMAG00000000685	parn	90	51.777	ENSTBEG00000010407	PARN	100	51.269	Tupaia_belangeri
ENSSMAG00000000685	parn	79	71.779	ENSTTRG00000002843	PARN	77	76.797	Tursiops_truncatus
ENSSMAG00000000685	parn	51	30.530	ENSTTRG00000010409	PNLDC1	55	30.530	Tursiops_truncatus
ENSSMAG00000000685	parn	71	65.826	ENSUAMG00000008283	PARN	94	64.760	Ursus_americanus
ENSSMAG00000000685	parn	100	62.250	ENSUMAG00000004527	PARN	100	62.096	Ursus_maritimus
ENSSMAG00000000685	parn	86	68.037	ENSVPAG00000008968	PARN	85	72.779	Vicugna_pacos
ENSSMAG00000000685	parn	100	62.712	ENSVVUG00000019509	PARN	83	75.933	Vulpes_vulpes
ENSSMAG00000000685	parn	87	69.429	ENSXETG00000010994	parn	100	74.528	Xenopus_tropicalis
ENSSMAG00000000685	parn	90	78.175	ENSXCOG00000015990	parn	99	80.672	Xiphophorus_couchianus
ENSSMAG00000000685	parn	100	79.685	ENSXMAG00000014783	parn	100	79.685	Xiphophorus_maculatus