EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000001020 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 13949 bases
Position: chr18:4403526-4417474
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000001613	TruB_N	PF01509.18	5.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000001648	-	1664	-	ENSSMAP00000001613	281 (aa)	-	A0A2U9CKX0

Gene Model

Click here to download ENSSMAG00000001020's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000001020's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000001020	trub1	69	30.808	ENSSMAG00000020820	trub2	60	30.808

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000001020	trub1	88	68.293	ENSG00000165832	TRUB1	70	68.293	Homo_sapiens
ENSSMAG00000001020	trub1	93	88.550	ENSAPOG00000020565	trub1	100	85.818	Acanthochromis_polyacanthus
ENSSMAG00000001020	trub1	88	68.145	ENSAMEG00000014931	TRUB1	70	68.145	Ailuropoda_melanoleuca
ENSSMAG00000001020	trub1	94	82.642	ENSACIG00000003060	trub1	89	82.642	Amphilophus_citrinellus
ENSSMAG00000001020	trub1	93	88.550	ENSAOCG00000017188	trub1	100	85.818	Amphiprion_ocellaris
ENSSMAG00000001020	trub1	93	89.313	ENSAPEG00000015209	trub1	100	86.545	Amphiprion_percula
ENSSMAG00000001020	trub1	87	88.571	ENSATEG00000023291	trub1	88	88.571	Anabas_testudineus
ENSSMAG00000001020	trub1	87	69.262	ENSAPLG00000006808	TRUB1	87	69.262	Anas_platyrhynchos
ENSSMAG00000001020	trub1	92	62.921	ENSACAG00000009282	TRUB1	88	66.531	Anolis_carolinensis
ENSSMAG00000001020	trub1	88	68.699	ENSANAG00000022870	TRUB1	70	68.699	Aotus_nancymaae
ENSSMAG00000001020	trub1	98	86.131	ENSACLG00000000823	trub1	97	86.131	Astatotilapia_calliptera
ENSSMAG00000001020	trub1	93	75.285	ENSAMXG00000015845	trub1	88	75.285	Astyanax_mexicanus
ENSSMAG00000001020	trub1	88	69.512	ENSBTAG00000012955	TRUB1	70	69.512	Bos_taurus
ENSSMAG00000001020	trub1	88	68.699	ENSCJAG00000047815	TRUB1	70	68.699	Callithrix_jacchus
ENSSMAG00000001020	trub1	88	69.106	ENSCAFG00000011688	TRUB1	70	69.106	Canis_familiaris
ENSSMAG00000001020	trub1	88	69.106	ENSCAFG00020013237	TRUB1	70	69.106	Canis_lupus_dingo
ENSSMAG00000001020	trub1	88	69.106	ENSCHIG00000020884	TRUB1	74	69.106	Capra_hircus
ENSSMAG00000001020	trub1	88	67.480	ENSTSYG00000000446	TRUB1	70	67.480	Carlito_syrichta
ENSSMAG00000001020	trub1	75	61.321	ENSCAPG00000017088	TRUB1	82	61.321	Cavia_aperea
ENSSMAG00000001020	trub1	69	64.767	ENSCPOG00000030129	-	74	64.767	Cavia_porcellus
ENSSMAG00000001020	trub1	68	65.789	ENSCPOG00000040236	-	77	65.789	Cavia_porcellus
ENSSMAG00000001020	trub1	88	68.699	ENSCCAG00000028842	TRUB1	70	68.699	Cebus_capucinus
ENSSMAG00000001020	trub1	88	68.699	ENSCATG00000033431	TRUB1	70	68.699	Cercocebus_atys
ENSSMAG00000001020	trub1	65	65.574	ENSCLAG00000008664	TRUB1	75	65.574	Chinchilla_lanigera
ENSSMAG00000001020	trub1	88	68.699	ENSCSAG00000004891	TRUB1	70	68.699	Chlorocebus_sabaeus
ENSSMAG00000001020	trub1	86	60.082	ENSCHOG00000011931	TRUB1	70	60.331	Choloepus_hoffmanni
ENSSMAG00000001020	trub1	87	71.020	ENSCPBG00000003051	TRUB1	84	71.020	Chrysemys_picta_bellii
ENSSMAG00000001020	trub1	88	68.699	ENSCANG00000029445	TRUB1	70	68.699	Colobus_angolensis_palliatus
ENSSMAG00000001020	trub1	76	68.075	ENSCGRG00001016772	-	71	67.907	Cricetulus_griseus_chok1gshd
ENSSMAG00000001020	trub1	85	60.251	ENSCGRG00001010322	-	66	59.756	Cricetulus_griseus_chok1gshd
ENSSMAG00000001020	trub1	85	67.782	ENSCGRG00000010806	Trub1	75	67.073	Cricetulus_griseus_crigri
ENSSMAG00000001020	trub1	93	79.693	ENSCSEG00000011261	trub1	88	78.229	Cynoglossus_semilaevis
ENSSMAG00000001020	trub1	91	81.961	ENSCVAG00000008791	trub1	78	81.961	Cyprinodon_variegatus
ENSSMAG00000001020	trub1	92	74.427	ENSDARG00000053805	trub1	90	74.427	Danio_rerio
ENSSMAG00000001020	trub1	88	66.667	ENSDNOG00000001069	TRUB1	70	66.667	Dasypus_novemcinctus
ENSSMAG00000001020	trub1	85	67.782	ENSDORG00000010431	Trub1	71	67.073	Dipodomys_ordii
ENSSMAG00000001020	trub1	68	67.153	ENSETEG00000009183	TRUB1	63	58.683	Echinops_telfairi
ENSSMAG00000001020	trub1	88	68.293	ENSEASG00005014739	TRUB1	70	68.293	Equus_asinus_asinus
ENSSMAG00000001020	trub1	88	68.293	ENSECAG00000007177	TRUB1	70	68.293	Equus_caballus
ENSSMAG00000001020	trub1	88	60.569	ENSEEUG00000013993	TRUB1	69	60.569	Erinaceus_europaeus
ENSSMAG00000001020	trub1	96	78.545	ENSELUG00000000502	trub1	96	78.545	Esox_lucius
ENSSMAG00000001020	trub1	88	69.106	ENSFCAG00000031927	TRUB1	70	69.106	Felis_catus
ENSSMAG00000001020	trub1	77	68.056	ENSFALG00000002232	TRUB1	83	68.056	Ficedula_albicollis
ENSSMAG00000001020	trub1	65	67.213	ENSFDAG00000008140	TRUB1	75	67.213	Fukomys_damarensis
ENSSMAG00000001020	trub1	97	81.250	ENSFHEG00000004016	trub1	93	81.250	Fundulus_heteroclitus
ENSSMAG00000001020	trub1	88	67.206	ENSGALG00000009091	TRUB1	87	67.206	Gallus_gallus
ENSSMAG00000001020	trub1	91	82.422	ENSGAFG00000009193	trub1	89	81.250	Gambusia_affinis
ENSSMAG00000001020	trub1	70	92.347	ENSGACG00000015387	trub1	96	92.347	Gasterosteus_aculeatus
ENSSMAG00000001020	trub1	87	71.020	ENSGAGG00000009758	TRUB1	70	71.020	Gopherus_agassizii
ENSSMAG00000001020	trub1	88	68.699	ENSGGOG00000004583	TRUB1	70	68.699	Gorilla_gorilla
ENSSMAG00000001020	trub1	98	85.766	ENSHBUG00000016787	trub1	97	85.766	Haplochromis_burtoni
ENSSMAG00000001020	trub1	88	67.480	ENSHGLG00000015314	TRUB1	70	67.480	Heterocephalus_glaber_female
ENSSMAG00000001020	trub1	65	66.667	ENSHGLG00100009183	TRUB1	77	66.667	Heterocephalus_glaber_male
ENSSMAG00000001020	trub1	94	87.170	ENSHCOG00000017877	trub1	95	87.170	Hippocampus_comes
ENSSMAG00000001020	trub1	91	76.078	ENSIPUG00000017559	trub1	90	76.078	Ictalurus_punctatus
ENSSMAG00000001020	trub1	88	68.699	ENSSTOG00000003641	TRUB1	73	68.699	Ictidomys_tridecemlineatus
ENSSMAG00000001020	trub1	88	67.480	ENSJJAG00000011800	Trub1	72	67.480	Jaculus_jaculus
ENSSMAG00000001020	trub1	97	83.088	ENSKMAG00000006232	trub1	98	83.088	Kryptolebias_marmoratus
ENSSMAG00000001020	trub1	98	87.681	ENSLBEG00000026722	trub1	96	87.681	Labrus_bergylta
ENSSMAG00000001020	trub1	92	69.884	ENSLACG00000014885	TRUB1	86	69.884	Latimeria_chalumnae
ENSSMAG00000001020	trub1	88	76.423	ENSLOCG00000012979	trub1	88	72.901	Lepisosteus_oculatus
ENSSMAG00000001020	trub1	88	67.886	ENSLAFG00000015452	TRUB1	74	66.409	Loxodonta_africana
ENSSMAG00000001020	trub1	88	68.699	ENSMFAG00000031767	TRUB1	70	68.699	Macaca_fascicularis
ENSSMAG00000001020	trub1	88	68.699	ENSMMUG00000001902	TRUB1	70	68.699	Macaca_mulatta
ENSSMAG00000001020	trub1	88	63.415	ENSMNEG00000044646	TRUB1	69	63.821	Macaca_nemestrina
ENSSMAG00000001020	trub1	88	68.699	ENSMLEG00000042655	TRUB1	70	68.699	Mandrillus_leucophaeus
ENSSMAG00000001020	trub1	98	86.131	ENSMZEG00005024095	trub1	97	86.131	Maylandia_zebra
ENSSMAG00000001020	trub1	88	68.016	ENSMGAG00000011135	TRUB1	85	68.016	Meleagris_gallopavo
ENSSMAG00000001020	trub1	85	65.690	ENSMAUG00000011101	Trub1	72	65.041	Mesocricetus_auratus
ENSSMAG00000001020	trub1	88	68.699	ENSMICG00000016324	TRUB1	70	68.699	Microcebus_murinus
ENSSMAG00000001020	trub1	85	68.067	ENSMOCG00000017759	Trub1	74	67.347	Microtus_ochrogaster
ENSSMAG00000001020	trub1	87	69.262	ENSMODG00000009676	TRUB1	71	66.148	Monodelphis_domestica
ENSSMAG00000001020	trub1	86	67.355	MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	Mus_caroli
ENSSMAG00000001020	trub1	86	66.529	ENSMUSG00000025086	Trub1	86	61.033	Mus_musculus
ENSSMAG00000001020	trub1	88	66.260	MGP_PahariEiJ_G0014588	Trub1	73	66.260	Mus_pahari
ENSSMAG00000001020	trub1	86	66.529	MGP_SPRETEiJ_G0024021	Trub1	86	61.033	Mus_spretus
ENSSMAG00000001020	trub1	88	69.106	ENSMPUG00000003556	TRUB1	70	69.106	Mustela_putorius_furo
ENSSMAG00000001020	trub1	88	67.480	ENSMLUG00000017686	TRUB1	72	67.480	Myotis_lucifugus
ENSSMAG00000001020	trub1	88	67.480	ENSNGAG00000018682	Trub1	71	67.480	Nannospalax_galili
ENSSMAG00000001020	trub1	91	90.234	ENSNBRG00000023393	trub1	90	90.909	Neolamprologus_brichardi
ENSSMAG00000001020	trub1	88	68.699	ENSNLEG00000016345	TRUB1	70	68.699	Nomascus_leucogenys
ENSSMAG00000001020	trub1	72	70.647	ENSMEUG00000006603	TRUB1	79	67.453	Notamacropus_eugenii
ENSSMAG00000001020	trub1	88	67.480	ENSOPRG00000009371	TRUB1	72	67.480	Ochotona_princeps
ENSSMAG00000001020	trub1	88	66.260	ENSODEG00000010854	TRUB1	70	66.260	Octodon_degus
ENSSMAG00000001020	trub1	94	87.925	ENSONIG00000007249	trub1	96	87.925	Oreochromis_niloticus
ENSSMAG00000001020	trub1	88	68.016	ENSOANG00000001556	TRUB1	85	65.769	Ornithorhynchus_anatinus
ENSSMAG00000001020	trub1	88	67.480	ENSOCUG00000009456	TRUB1	71	67.480	Oryctolagus_cuniculus
ENSSMAG00000001020	trub1	96	81.181	ENSORLG00000029719	trub1	97	81.181	Oryzias_latipes
ENSSMAG00000001020	trub1	98	80.657	ENSORLG00020016767	trub1	97	80.657	Oryzias_latipes_hni
ENSSMAG00000001020	trub1	96	80.741	ENSORLG00015014728	trub1	97	80.741	Oryzias_latipes_hsok
ENSSMAG00000001020	trub1	94	82.197	ENSOMEG00000014556	trub1	93	82.197	Oryzias_melastigma
ENSSMAG00000001020	trub1	88	68.699	ENSOGAG00000015895	TRUB1	70	68.699	Otolemur_garnettii
ENSSMAG00000001020	trub1	88	67.589	ENSOARG00000015591	TRUB1	72	67.589	Ovis_aries
ENSSMAG00000001020	trub1	88	68.699	ENSPPAG00000043645	TRUB1	70	68.699	Pan_paniscus
ENSSMAG00000001020	trub1	88	68.293	ENSPPRG00000007096	TRUB1	70	68.293	Panthera_pardus
ENSSMAG00000001020	trub1	88	68.699	ENSPTIG00000006378	TRUB1	70	68.699	Panthera_tigris_altaica
ENSSMAG00000001020	trub1	88	68.699	ENSPTRG00000002964	TRUB1	70	68.699	Pan_troglodytes
ENSSMAG00000001020	trub1	88	68.699	ENSPANG00000020712	TRUB1	70	68.699	Papio_anubis
ENSSMAG00000001020	trub1	60	78.571	ENSPKIG00000003852	trub1	72	78.571	Paramormyrops_kingsleyae
ENSSMAG00000001020	trub1	88	70.732	ENSPSIG00000012877	TRUB1	84	70.732	Pelodiscus_sinensis
ENSSMAG00000001020	trub1	97	77.656	ENSPMGG00000000075	trub1	96	77.656	Periophthalmus_magnuspinnatus
ENSSMAG00000001020	trub1	88	68.699	ENSPEMG00000011156	Trub1	72	68.699	Peromyscus_maniculatus_bairdii
ENSSMAG00000001020	trub1	87	69.262	ENSPCIG00000009729	TRUB1	69	66.538	Phascolarctos_cinereus
ENSSMAG00000001020	trub1	94	82.576	ENSPFOG00000009950	trub1	96	82.576	Poecilia_formosa
ENSSMAG00000001020	trub1	97	81.618	ENSPLAG00000013855	trub1	95	81.618	Poecilia_latipinna
ENSSMAG00000001020	trub1	95	82.836	ENSPMEG00000009064	trub1	96	82.836	Poecilia_mexicana
ENSSMAG00000001020	trub1	95	82.836	ENSPREG00000003343	trub1	96	82.836	Poecilia_reticulata
ENSSMAG00000001020	trub1	88	68.293	ENSPPYG00000002676	TRUB1	70	68.293	Pongo_abelii
ENSSMAG00000001020	trub1	92	59.924	ENSPCAG00000008427	TRUB1	74	59.924	Procavia_capensis
ENSSMAG00000001020	trub1	88	63.008	ENSPCOG00000024360	TRUB1	69	62.195	Propithecus_coquereli
ENSSMAG00000001020	trub1	72	69.802	ENSPVAG00000007575	TRUB1	77	69.802	Pteropus_vampyrus
ENSSMAG00000001020	trub1	98	85.766	ENSPNYG00000018614	trub1	97	85.766	Pundamilia_nyererei
ENSSMAG00000001020	trub1	94	65.660	ENSPNAG00000006881	trub1	86	64.906	Pygocentrus_nattereri
ENSSMAG00000001020	trub1	88	65.447	ENSRNOG00000017321	Trub1	72	65.447	Rattus_norvegicus
ENSSMAG00000001020	trub1	88	59.274	ENSRBIG00000033423	TRUB1	68	59.274	Rhinopithecus_bieti
ENSSMAG00000001020	trub1	88	68.699	ENSRROG00000033902	TRUB1	70	68.699	Rhinopithecus_roxellana
ENSSMAG00000001020	trub1	88	68.699	ENSSBOG00000024237	TRUB1	70	68.699	Saimiri_boliviensis_boliviensis
ENSSMAG00000001020	trub1	76	70.233	ENSSHAG00000009346	TRUB1	72	70.233	Sarcophilus_harrisii
ENSSMAG00000001020	trub1	96	74.275	ENSSFOG00015022124	trub1	92	75.836	Scleropages_formosus
ENSSMAG00000001020	trub1	94	89.434	ENSSDUG00000016414	trub1	95	89.434	Seriola_dumerili
ENSSMAG00000001020	trub1	94	89.434	ENSSLDG00000015486	trub1	95	89.434	Seriola_lalandi_dorsalis
ENSSMAG00000001020	trub1	93	67.300	ENSSPUG00000001642	TRUB1	90	67.300	Sphenodon_punctatus
ENSSMAG00000001020	trub1	98	84.892	ENSSPAG00000001217	trub1	100	84.892	Stegastes_partitus
ENSSMAG00000001020	trub1	88	67.886	ENSSSCG00000010653	TRUB1	72	67.886	Sus_scrofa
ENSSMAG00000001020	trub1	87	68.571	ENSTGUG00000010971	TRUB1	90	66.929	Taeniopygia_guttata
ENSSMAG00000001020	trub1	75	58.962	ENSTBEG00000002880	TRUB1	83	58.962	Tupaia_belangeri
ENSSMAG00000001020	trub1	72	69.307	ENSTTRG00000005767	TRUB1	77	69.307	Tursiops_truncatus
ENSSMAG00000001020	trub1	88	69.106	ENSUAMG00000024876	TRUB1	70	69.106	Ursus_americanus
ENSSMAG00000001020	trub1	88	69.106	ENSUMAG00000002411	TRUB1	73	69.106	Ursus_maritimus
ENSSMAG00000001020	trub1	88	69.106	ENSVPAG00000005507	TRUB1	70	69.106	Vicugna_pacos
ENSSMAG00000001020	trub1	88	69.106	ENSVVUG00000010085	TRUB1	59	69.106	Vulpes_vulpes
ENSSMAG00000001020	trub1	93	65.038	ENSXETG00000023828	trub1	96	65.038	Xenopus_tropicalis
ENSSMAG00000001020	trub1	88	83.468	ENSXCOG00000017847	trub1	87	83.468	Xiphophorus_couchianus
ENSSMAG00000001020	trub1	94	82.642	ENSXMAG00000014701	trub1	95	82.642	Xiphophorus_maculatus