EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000001122 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-14h10.2
Alias: wu:fe48h10|zgc:101795
Full Name: si:ch73-14h10.2
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 4270 bases
Position: chr12:20833902-20838171
Accession: ZDB-GENE-141222-67
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000001777	LSM	PF01423.22	7.6e-17	1	1
ENSSMAP00000001791	LSM	PF01423.22	2.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000001812	-	2721	-	ENSSMAP00000001777	95 (aa)	-	A0A2U9C6S1
ENSSMAT00000001829	-	2895	-	ENSSMAP00000001791	153 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000001122's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000001122's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000001122	si:ch73-14h10.2	100	32.673	ENSSMAG00000021020	lsm4	65	32.673

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSG00000204392	LSM2	100	98.947	Homo_sapiens
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSAPOG00000017967	si:ch73-14h10.2	100	98.947	Acanthochromis_polyacanthus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSAMEG00000006483	LSM2	100	98.936	Ailuropoda_melanoleuca
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSACIG00000007795	si:ch73-14h10.2	63	98.947	Amphilophus_citrinellus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSAOCG00000006949	si:ch73-14h10.2	88	96.262	Amphiprion_ocellaris
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSAPEG00000020375	si:ch73-14h10.2	98	96.226	Amphiprion_percula
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSATEG00000011376	si:ch73-14h10.2	100	98.947	Anabas_testudineus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSACAG00000017281	LSM2	92	97.917	Anolis_carolinensis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSANAG00000028372	LSM2	100	98.947	Aotus_nancymaae
ENSSMAG00000001122	si:ch73-14h10.2	96	80.220	ENSANAG00000028033	-	96	80.220	Aotus_nancymaae
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSACLG00000024717	smx5	100	98.947	Astatotilapia_calliptera
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSAMXG00000036868	si:ch73-14h10.2	100	98.947	Astyanax_mexicanus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSBTAG00000005634	LSM2	100	98.947	Bos_taurus
ENSSMAG00000001122	si:ch73-14h10.2	99	82.979	WBGene00001808	gut-2	97	82.979	Caenorhabditis_elegans
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCJAG00000040899	LSM2	100	98.947	Callithrix_jacchus
ENSSMAG00000001122	si:ch73-14h10.2	75	97.183	ENSCAFG00020016978	-	88	97.183	Canis_lupus_dingo
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSCHIG00000016153	LSM2	100	98.936	Capra_hircus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSTSYG00000034844	LSM2	100	98.947	Carlito_syrichta
ENSSMAG00000001122	si:ch73-14h10.2	99	89.362	ENSTSYG00000030015	-	100	89.362	Carlito_syrichta
ENSSMAG00000001122	si:ch73-14h10.2	76	98.611	ENSCAPG00000009970	LSM2	92	98.611	Cavia_aperea
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCPOG00000021053	LSM2	100	98.947	Cavia_porcellus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCCAG00000024276	LSM2	100	98.947	Cebus_capucinus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCATG00000013737	LSM2	100	98.947	Cercocebus_atys
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCLAG00000008081	LSM2	100	98.947	Chinchilla_lanigera
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCSAG00000008800	LSM2	100	98.947	Chlorocebus_sabaeus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCHOG00000007702	LSM2	100	98.947	Choloepus_hoffmanni
ENSSMAG00000001122	si:ch73-14h10.2	100	95.789	ENSCING00000022677	-	100	95.789	Ciona_intestinalis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCANG00000039576	LSM2	100	98.947	Colobus_angolensis_palliatus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCGRG00001013932	Lsm2	100	98.947	Cricetulus_griseus_chok1gshd
ENSSMAG00000001122	si:ch73-14h10.2	76	98.611	ENSCGRG00000013311	Lsm2	62	98.611	Cricetulus_griseus_crigri
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSCSEG00000002911	si:ch73-14h10.2	100	98.947	Cynoglossus_semilaevis
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSCVAG00000015394	si:ch73-14h10.2	100	96.226	Cyprinodon_variegatus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSDARG00000070867	smx5	100	98.947	Danio_rerio
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSDNOG00000002633	LSM2	100	98.936	Dasypus_novemcinctus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSDORG00000026571	Lsm2	100	98.947	Dipodomys_ordii
ENSSMAG00000001122	si:ch73-14h10.2	96	95.604	FBgn0036277	CG10418	96	95.604	Drosophila_melanogaster
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSEASG00005015670	LSM2	79	98.936	Equus_asinus_asinus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSECAG00000018791	LSM2	79	98.936	Equus_caballus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSELUG00000008241	smx5	100	98.947	Esox_lucius
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSFCAG00000045887	LSM2	100	98.947	Felis_catus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSFDAG00000000390	LSM2	100	98.947	Fukomys_damarensis
ENSSMAG00000001122	si:ch73-14h10.2	99	95.833	ENSFHEG00000009619	si:ch73-14h10.2	100	95.833	Fundulus_heteroclitus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSGAFG00000017286	si:ch73-14h10.2	100	98.947	Gambusia_affinis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSGACG00000003827	si:ch73-14h10.2	100	98.947	Gasterosteus_aculeatus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSGAGG00000012458	LSM2	100	98.947	Gopherus_agassizii
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSGGOG00000011383	LSM2	100	98.947	Gorilla_gorilla
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSHGLG00000011299	LSM2	100	98.947	Heterocephalus_glaber_female
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSHGLG00100017194	LSM2	100	98.947	Heterocephalus_glaber_male
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSHCOG00000014057	si:ch73-14h10.2	100	98.947	Hippocampus_comes
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSIPUG00000010539	lsm2	100	98.947	Ictalurus_punctatus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSTOG00000013144	LSM2	100	98.947	Ictidomys_tridecemlineatus
ENSSMAG00000001122	si:ch73-14h10.2	94	76.404	ENSJJAG00000019477	-	100	76.404	Jaculus_jaculus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSKMAG00000014909	si:ch73-14h10.2	100	98.947	Kryptolebias_marmoratus
ENSSMAG00000001122	si:ch73-14h10.2	99	97.872	ENSLBEG00000025781	si:ch73-14h10.2	100	97.917	Labrus_bergylta
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSLACG00000015064	LSM2	100	98.947	Latimeria_chalumnae
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSLOCG00000005228	si:ch73-14h10.2	100	98.947	Lepisosteus_oculatus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSLAFG00000016139	LSM2	100	98.936	Loxodonta_africana
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMFAG00000001016	LSM2	100	98.947	Macaca_fascicularis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMMUG00000006832	LSM2	100	98.947	Macaca_mulatta
ENSSMAG00000001122	si:ch73-14h10.2	99	80.851	ENSMMUG00000045473	-	97	80.851	Macaca_mulatta
ENSSMAG00000001122	si:ch73-14h10.2	79	84.000	ENSMNEG00000040973	-	91	84.000	Macaca_nemestrina
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMNEG00000045355	LSM2	100	98.947	Macaca_nemestrina
ENSSMAG00000001122	si:ch73-14h10.2	99	79.787	ENSMLEG00000031181	-	97	79.787	Mandrillus_leucophaeus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMLEG00000037369	-	100	98.947	Mandrillus_leucophaeus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMAMG00000010053	si:ch73-14h10.2	73	98.947	Mastacembelus_armatus
ENSSMAG00000001122	si:ch73-14h10.2	99	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMAUG00000021966	Lsm2	100	98.947	Mesocricetus_auratus
ENSSMAG00000001122	si:ch73-14h10.2	76	77.778	ENSMICG00000046764	-	92	77.778	Microcebus_murinus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMOCG00000015306	Lsm2	100	98.947	Microtus_ochrogaster
ENSSMAG00000001122	si:ch73-14h10.2	99	97.872	ENSMMOG00000005603	si:ch73-14h10.2	100	97.872	Mola_mola
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSMODG00000015177	LSM2	100	98.947	Monodelphis_domestica
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMALG00000016490	si:ch73-14h10.2	100	98.947	Monopterus_albus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	MGP_CAROLIEiJ_G0021490	Lsm2	100	98.947	Mus_caroli
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSMUSG00000007050	Lsm2	100	98.947	Mus_musculus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	MGP_PahariEiJ_G0020485	Lsm2	100	98.947	Mus_pahari
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	MGP_SPRETEiJ_G0022395	Lsm2	100	98.947	Mus_spretus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSNGAG00000003997	Lsm2	100	98.947	Nannospalax_galili
ENSSMAG00000001122	si:ch73-14h10.2	99	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSNLEG00000035542	LSM2	100	98.947	Nomascus_leucogenys
ENSSMAG00000001122	si:ch73-14h10.2	75	98.592	ENSMEUG00000003419	LSM2	100	98.592	Notamacropus_eugenii
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSOPRG00000003668	LSM2	100	98.947	Ochotona_princeps
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSODEG00000017583	LSM2	100	98.947	Octodon_degus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSONIG00000019321	si:ch73-14h10.2	100	98.947	Oreochromis_niloticus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSOANG00000005398	LSM2	100	98.936	Ornithorhynchus_anatinus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSOCUG00000002583	LSM2	100	98.947	Oryctolagus_cuniculus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSORLG00000029858	si:ch73-14h10.2	100	98.947	Oryzias_latipes
ENSSMAG00000001122	si:ch73-14h10.2	100	75.806	ENSORLG00015000465	si:ch73-14h10.2	100	75.806	Oryzias_latipes_hsok
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSOMEG00000002892	si:ch73-14h10.2	100	98.947	Oryzias_melastigma
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSOARG00000004575	LSM2	100	98.936	Ovis_aries
ENSSMAG00000001122	si:ch73-14h10.2	79	85.333	ENSPPAG00000043941	-	93	85.333	Pan_paniscus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPPAG00000032431	LSM2	100	98.947	Pan_paniscus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPPRG00000015353	LSM2	100	98.947	Panthera_pardus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSPTIG00000010303	LSM2	99	98.936	Panthera_tigris_altaica
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPTRG00000017986	LSM2	100	98.947	Pan_troglodytes
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPANG00000024577	LSM2	100	98.947	Papio_anubis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPKIG00000007028	si:ch73-14h10.2	100	98.947	Paramormyrops_kingsleyae
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSPSIG00000004458	LSM2	80	97.917	Pelodiscus_sinensis
ENSSMAG00000001122	si:ch73-14h10.2	99	96.809	ENSPMGG00000018511	si:ch73-14h10.2	100	96.809	Periophthalmus_magnuspinnatus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPFOG00000001621	si:ch73-14h10.2	100	98.947	Poecilia_formosa
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPLAG00000017165	si:ch73-14h10.2	100	98.947	Poecilia_latipinna
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPMEG00000019574	si:ch73-14h10.2	100	98.947	Poecilia_mexicana
ENSSMAG00000001122	si:ch73-14h10.2	99	97.872	ENSPREG00000016534	si:ch73-14h10.2	100	97.872	Poecilia_reticulata
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPPYG00000016461	-	54	98.947	Pongo_abelii
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPCAG00000013737	LSM2	100	98.947	Procavia_capensis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPCOG00000020134	LSM2	100	98.947	Propithecus_coquereli
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPVAG00000012405	LSM2	100	98.947	Pteropus_vampyrus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPNYG00000019298	smx5	100	98.947	Pundamilia_nyererei
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSPNAG00000027769	si:ch73-14h10.2	100	98.947	Pygocentrus_nattereri
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSRNOG00000048725	Lsm2	100	98.947	Rattus_norvegicus
ENSSMAG00000001122	si:ch73-14h10.2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSSMAG00000001122	si:ch73-14h10.2	79	85.333	ENSRBIG00000011356	-	91	85.333	Rhinopithecus_bieti
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSRBIG00000010172	LSM2	100	98.947	Rhinopithecus_bieti
ENSSMAG00000001122	si:ch73-14h10.2	79	85.333	ENSRROG00000030708	-	91	85.333	Rhinopithecus_roxellana
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSRROG00000030345	LSM2	100	98.947	Rhinopithecus_roxellana
ENSSMAG00000001122	si:ch73-14h10.2	100	63.158	YBL026W	LSM2	100	63.158	Saccharomyces_cerevisiae
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSBOG00000018943	LSM2	100	98.947	Saimiri_boliviensis_boliviensis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSFOG00015006734	lsm2	100	98.947	Scleropages_formosus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSDUG00000021605	smx5	100	98.947	Seriola_dumerili
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSLDG00000002765	si:ch73-14h10.2	100	98.947	Seriola_lalandi_dorsalis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSPUG00000009631	LSM2	100	98.947	Sphenodon_punctatus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSPAG00000016904	si:ch73-14h10.2	100	98.947	Stegastes_partitus
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSSSCG00000039021	LSM2	100	98.947	Sus_scrofa
ENSSMAG00000001122	si:ch73-14h10.2	99	97.872	ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	Takifugu_rubripes
ENSSMAG00000001122	si:ch73-14h10.2	69	95.455	ENSTNIG00000013770	si:ch73-14h10.2	100	95.522	Tetraodon_nigroviridis
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSTTRG00000014131	LSM2	100	98.947	Tursiops_truncatus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSUMAG00000013425	LSM2	65	98.936	Ursus_maritimus
ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	ENSVPAG00000001761	LSM2	100	98.936	Vicugna_pacos
ENSSMAG00000001122	si:ch73-14h10.2	79	97.333	ENSVVUG00000016264	-	93	97.333	Vulpes_vulpes
ENSSMAG00000001122	si:ch73-14h10.2	100	98.947	ENSXETG00000024077	lsm2	100	98.947	Xenopus_tropicalis
ENSSMAG00000001122	si:ch73-14h10.2	99	97.872	ENSXCOG00000006078	si:ch73-14h10.2	100	97.872	Xiphophorus_couchianus
ENSSMAG00000001122	si:ch73-14h10.2	99	97.872	ENSXMAG00000028018	si:ch73-14h10.2	100	97.872	Xiphophorus_maculatus