EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000001513 (Gene tree)
Gene ID: -
Gene Symbol: zgc:162879
Alias: -
Full Name: zgc:162879
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 13792 bases
Position: chr10:13045201-13058992
Accession: ZDB-GENE-070424-92
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000002429	MMR_HSR1	PF01926.23	1.2e-06	1	1
ENSSMAP00000002513	MMR_HSR1	PF01926.23	1.3e-06	1	1
ENSSMAP00000002404	MMR_HSR1	PF01926.23	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000002556	-	1962	-	ENSSMAP00000002513	653 (aa)	-	-
ENSSMAT00000002472	-	3592	-	ENSSMAP00000002429	662 (aa)	-	-
ENSSMAT00000002447	-	2795	-	ENSSMAP00000002404	630 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000001513's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000001513's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000001513	zgc:162879	76	38.462	ENSSMAG00000011200	CRACR2A	73	37.264
ENSSMAG00000001513	zgc:162879	77	36.364	ENSSMAG00000001304	cracr2ab	67	36.364
ENSSMAG00000001513	zgc:162879	82	64.417	ENSSMAG00000000942	rasef	71	64.417

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000001513	zgc:162879	99	80.480	ENSAPOG00000008539	zgc:162879	99	80.425	Acanthochromis_polyacanthus
ENSSMAG00000001513	zgc:162879	99	79.248	ENSACIG00000023717	zgc:162879	100	79.248	Amphilophus_citrinellus
ENSSMAG00000001513	zgc:162879	85	79.433	ENSAOCG00000006210	zgc:162879	87	79.433	Amphiprion_ocellaris
ENSSMAG00000001513	zgc:162879	99	80.880	ENSAPEG00000017489	zgc:162879	99	80.880	Amphiprion_percula
ENSSMAG00000001513	zgc:162879	99	83.968	ENSATEG00000006102	zgc:162879	100	83.886	Anabas_testudineus
ENSSMAG00000001513	zgc:162879	100	76.276	ENSACLG00000021066	zgc:162879	100	74.887	Astatotilapia_calliptera
ENSSMAG00000001513	zgc:162879	99	61.252	ENSAMXG00000007430	zgc:162879	100	61.252	Astyanax_mexicanus
ENSSMAG00000001513	zgc:162879	99	60.363	ENSCSEG00000013699	zgc:162879	99	60.363	Cynoglossus_semilaevis
ENSSMAG00000001513	zgc:162879	99	72.249	ENSCVAG00000014510	zgc:162879	99	71.818	Cyprinodon_variegatus
ENSSMAG00000001513	zgc:162879	99	60.902	ENSDARG00000074163	zgc:162879	100	60.902	Danio_rerio
ENSSMAG00000001513	zgc:162879	88	67.402	ENSELUG00000019483	zgc:162879	99	67.640	Esox_lucius
ENSSMAG00000001513	zgc:162879	76	69.960	ENSFHEG00000022549	zgc:162879	100	69.960	Fundulus_heteroclitus
ENSSMAG00000001513	zgc:162879	99	71.292	ENSGAFG00000001313	zgc:162879	100	70.348	Gambusia_affinis
ENSSMAG00000001513	zgc:162879	99	74.601	ENSGACG00000010798	zgc:162879	99	74.165	Gasterosteus_aculeatus
ENSSMAG00000001513	zgc:162879	99	76.704	ENSHBUG00000016335	zgc:162879	100	76.541	Haplochromis_burtoni
ENSSMAG00000001513	zgc:162879	95	56.931	ENSHCOG00000012026	zgc:162879	99	57.096	Hippocampus_comes
ENSSMAG00000001513	zgc:162879	99	66.879	ENSKMAG00000016246	zgc:162879	100	66.314	Kryptolebias_marmoratus
ENSSMAG00000001513	zgc:162879	99	75.791	ENSLBEG00000006690	zgc:162879	100	74.699	Labrus_bergylta
ENSSMAG00000001513	zgc:162879	95	58.503	ENSLACG00000014082	-	87	57.143	Latimeria_chalumnae
ENSSMAG00000001513	zgc:162879	99	60.188	ENSLOCG00000014347	zgc:162879	98	59.375	Lepisosteus_oculatus
ENSSMAG00000001513	zgc:162879	100	78.399	ENSMAMG00000008875	zgc:162879	100	78.399	Mastacembelus_armatus
ENSSMAG00000001513	zgc:162879	99	76.508	ENSMZEG00005022256	zgc:162879	100	76.355	Maylandia_zebra
ENSSMAG00000001513	zgc:162879	99	68.571	ENSNBRG00000020110	zgc:162879	100	68.571	Neolamprologus_brichardi
ENSSMAG00000001513	zgc:162879	99	73.286	ENSONIG00000015165	zgc:162879	100	73.286	Oreochromis_niloticus
ENSSMAG00000001513	zgc:162879	99	68.102	ENSORLG00015017960	zgc:162879	99	68.030	Oryzias_latipes_hsok
ENSSMAG00000001513	zgc:162879	99	56.847	ENSPKIG00000020661	zgc:162879	100	55.740	Paramormyrops_kingsleyae
ENSSMAG00000001513	zgc:162879	99	70.541	ENSPFOG00000006354	zgc:162879	99	69.637	Poecilia_formosa
ENSSMAG00000001513	zgc:162879	99	70.701	ENSPLAG00000020643	zgc:162879	99	69.637	Poecilia_latipinna
ENSSMAG00000001513	zgc:162879	99	70.654	ENSPMEG00000014713	zgc:162879	100	69.743	Poecilia_mexicana
ENSSMAG00000001513	zgc:162879	99	69.023	ENSPNYG00000010530	zgc:162879	100	69.023	Pundamilia_nyererei
ENSSMAG00000001513	zgc:162879	99	60.268	ENSPNAG00000012022	zgc:162879	100	60.268	Pygocentrus_nattereri
ENSSMAG00000001513	zgc:162879	90	49.406	ENSSFOG00015023774	zgc:162879	93	49.406	Scleropages_formosus
ENSSMAG00000001513	zgc:162879	99	86.032	ENSSDUG00000011478	zgc:162879	100	85.542	Seriola_dumerili
ENSSMAG00000001513	zgc:162879	99	85.873	ENSSLDG00000000877	zgc:162879	100	85.542	Seriola_lalandi_dorsalis
ENSSMAG00000001513	zgc:162879	99	72.989	ENSSPAG00000010598	zgc:162879	99	73.141	Stegastes_partitus
ENSSMAG00000001513	zgc:162879	100	69.307	ENSTNIG00000019239	zgc:162879	99	69.252	Tetraodon_nigroviridis
ENSSMAG00000001513	zgc:162879	99	42.774	ENSXETG00000015491	rasef	98	42.281	Xenopus_tropicalis
ENSSMAG00000001513	zgc:162879	78	65.107	ENSXCOG00000020244	zgc:162879	100	65.815	Xiphophorus_couchianus
ENSSMAG00000001513	zgc:162879	99	71.770	ENSXMAG00000002846	zgc:162879	100	70.802	Xiphophorus_maculatus