EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000001669 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 29783 bases
Position: chr1:2127104-2156886
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000002694	R3H	PF01424.22	4.8e-12	1	1
ENSSMAP00000002660	R3H	PF01424.22	5.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000002743	-	5622	-	ENSSMAP00000002694	1076 (aa)	-	-
ENSSMAT00000002708	-	5712	-	ENSSMAP00000002660	1106 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000001669's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000001669's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000001669	r3hdm1	64	54.396	ENSSMAG00000012073	r3hdm2	87	54.076

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000001669	r3hdm1	99	44.703	ENSG00000048991	R3HDM1	99	60.541	Homo_sapiens
ENSSMAG00000001669	r3hdm1	90	80.348	ENSAPOG00000020850	r3hdm1	97	80.348	Acanthochromis_polyacanthus
ENSSMAG00000001669	r3hdm1	99	44.991	ENSAMEG00000014886	R3HDM1	99	44.996	Ailuropoda_melanoleuca
ENSSMAG00000001669	r3hdm1	90	79.981	ENSAOCG00000005192	r3hdm1	100	79.981	Amphiprion_ocellaris
ENSSMAG00000001669	r3hdm1	90	83.976	ENSAPEG00000016108	r3hdm1	100	83.976	Amphiprion_percula
ENSSMAG00000001669	r3hdm1	90	81.542	ENSATEG00000000232	r3hdm1	100	82.049	Anabas_testudineus
ENSSMAG00000001669	r3hdm1	99	43.697	ENSAPLG00000015231	R3HDM1	99	44.216	Anas_platyrhynchos
ENSSMAG00000001669	r3hdm1	99	42.263	ENSACAG00000001676	R3HDM1	99	42.467	Anolis_carolinensis
ENSSMAG00000001669	r3hdm1	99	44.606	ENSANAG00000035334	R3HDM1	99	60.811	Aotus_nancymaae
ENSSMAG00000001669	r3hdm1	90	82.096	ENSACLG00000027282	r3hdm1	100	82.096	Astatotilapia_calliptera
ENSSMAG00000001669	r3hdm1	87	71.474	ENSAMXG00000003536	r3hdm1	87	73.179	Astyanax_mexicanus
ENSSMAG00000001669	r3hdm1	86	74.587	ENSAMXG00000012861	R3HDM1	88	73.597	Astyanax_mexicanus
ENSSMAG00000001669	r3hdm1	99	44.374	ENSBTAG00000013302	R3HDM1	99	44.186	Bos_taurus
ENSSMAG00000001669	r3hdm1	99	44.777	ENSCJAG00000011718	R3HDM1	99	60.811	Callithrix_jacchus
ENSSMAG00000001669	r3hdm1	99	44.991	ENSCAFG00000005075	R3HDM1	99	45.034	Canis_familiaris
ENSSMAG00000001669	r3hdm1	99	44.991	ENSCAFG00020016119	R3HDM1	92	57.227	Canis_lupus_dingo
ENSSMAG00000001669	r3hdm1	99	44.905	ENSCHIG00000020851	R3HDM1	99	45.034	Capra_hircus
ENSSMAG00000001669	r3hdm1	99	43.289	ENSCPOG00000012784	R3HDM1	100	59.310	Cavia_porcellus
ENSSMAG00000001669	r3hdm1	99	44.919	ENSCCAG00000027199	R3HDM1	99	61.394	Cebus_capucinus
ENSSMAG00000001669	r3hdm1	99	44.435	ENSCATG00000023642	R3HDM1	99	60.541	Cercocebus_atys
ENSSMAG00000001669	r3hdm1	94	44.793	ENSCLAG00000007962	R3HDM1	100	61.724	Chinchilla_lanigera
ENSSMAG00000001669	r3hdm1	99	43.697	ENSCSAG00000016356	R3HDM1	99	43.609	Chlorocebus_sabaeus
ENSSMAG00000001669	r3hdm1	81	64.286	ENSCHOG00000013638	R3HDM1	79	64.286	Choloepus_hoffmanni
ENSSMAG00000001669	r3hdm1	91	45.659	ENSCPBG00000009645	R3HDM1	99	45.312	Chrysemys_picta_bellii
ENSSMAG00000001669	r3hdm1	94	60.811	ENSCANG00000034748	R3HDM1	99	60.811	Colobus_angolensis_palliatus
ENSSMAG00000001669	r3hdm1	99	42.751	ENSCGRG00001012357	R3hdm1	96	43.417	Cricetulus_griseus_chok1gshd
ENSSMAG00000001669	r3hdm1	99	43.819	ENSCGRG00000012080	R3hdm1	100	62.069	Cricetulus_griseus_crigri
ENSSMAG00000001669	r3hdm1	90	69.750	ENSCSEG00000008944	r3hdm1	100	70.549	Cynoglossus_semilaevis
ENSSMAG00000001669	r3hdm1	90	75.615	ENSCVAG00000007582	r3hdm1	100	75.615	Cyprinodon_variegatus
ENSSMAG00000001669	r3hdm1	99	42.869	ENSDNOG00000000771	R3HDM1	99	43.077	Dasypus_novemcinctus
ENSSMAG00000001669	r3hdm1	72	62.500	ENSETEG00000013606	R3HDM1	88	52.014	Echinops_telfairi
ENSSMAG00000001669	r3hdm1	99	44.923	ENSEASG00005007392	R3HDM1	99	44.710	Equus_asinus_asinus
ENSSMAG00000001669	r3hdm1	99	44.664	ENSECAG00000019114	R3HDM1	99	44.949	Equus_caballus
ENSSMAG00000001669	r3hdm1	63	57.985	ENSEEUG00000012589	R3HDM1	72	51.456	Erinaceus_europaeus
ENSSMAG00000001669	r3hdm1	94	47.779	ENSELUG00000014413	r3hdm1	99	48.370	Esox_lucius
ENSSMAG00000001669	r3hdm1	95	47.207	ENSELUG00000004909	R3HDM1	99	47.756	Esox_lucius
ENSSMAG00000001669	r3hdm1	99	44.614	ENSFCAG00000027113	R3HDM1	99	44.751	Felis_catus
ENSSMAG00000001669	r3hdm1	99	43.823	ENSFDAG00000016478	R3HDM1	100	62.414	Fukomys_damarensis
ENSSMAG00000001669	r3hdm1	90	72.830	ENSFHEG00000018713	r3hdm1	100	72.830	Fundulus_heteroclitus
ENSSMAG00000001669	r3hdm1	59	60.954	ENSGMOG00000006042	-	75	60.907	Gadus_morhua
ENSSMAG00000001669	r3hdm1	89	64.026	ENSGALG00000012246	R3HDM1	98	64.026	Gallus_gallus
ENSSMAG00000001669	r3hdm1	90	73.684	ENSGAFG00000006203	r3hdm1	100	73.961	Gambusia_affinis
ENSSMAG00000001669	r3hdm1	90	76.199	ENSGACG00000014925	r3hdm1	99	76.393	Gasterosteus_aculeatus
ENSSMAG00000001669	r3hdm1	86	66.234	ENSGAGG00000007840	R3HDM1	86	66.234	Gopherus_agassizii
ENSSMAG00000001669	r3hdm1	99	44.961	ENSGGOG00000008156	R3HDM1	99	60.541	Gorilla_gorilla
ENSSMAG00000001669	r3hdm1	94	45.060	ENSHGLG00000015718	R3HDM1	100	62.069	Heterocephalus_glaber_female
ENSSMAG00000001669	r3hdm1	99	43.529	ENSHGLG00100003184	-	100	62.414	Heterocephalus_glaber_male
ENSSMAG00000001669	r3hdm1	90	66.871	ENSHCOG00000013366	r3hdm1	100	67.109	Hippocampus_comes
ENSSMAG00000001669	r3hdm1	90	50.849	ENSIPUG00000001676	R3HDM1	100	50.588	Ictalurus_punctatus
ENSSMAG00000001669	r3hdm1	70	70.297	ENSIPUG00000013629	r3hdm1	93	69.536	Ictalurus_punctatus
ENSSMAG00000001669	r3hdm1	99	45.030	ENSSTOG00000007572	R3HDM1	100	62.069	Ictidomys_tridecemlineatus
ENSSMAG00000001669	r3hdm1	95	45.702	ENSLACG00000005334	R3HDM1	98	45.263	Latimeria_chalumnae
ENSSMAG00000001669	r3hdm1	99	48.151	ENSLOCG00000001641	r3hdm1	99	48.151	Lepisosteus_oculatus
ENSSMAG00000001669	r3hdm1	99	43.624	ENSLAFG00000009065	R3HDM1	99	43.594	Loxodonta_africana
ENSSMAG00000001669	r3hdm1	99	44.521	ENSMFAG00000030331	R3HDM1	99	60.541	Macaca_fascicularis
ENSSMAG00000001669	r3hdm1	99	44.606	ENSMMUG00000009844	R3HDM1	99	60.541	Macaca_mulatta
ENSSMAG00000001669	r3hdm1	99	44.606	ENSMNEG00000027793	R3HDM1	99	60.541	Macaca_nemestrina
ENSSMAG00000001669	r3hdm1	99	44.521	ENSMLEG00000043189	R3HDM1	99	60.541	Mandrillus_leucophaeus
ENSSMAG00000001669	r3hdm1	90	80.607	ENSMAMG00000004532	r3hdm1	100	80.607	Mastacembelus_armatus
ENSSMAG00000001669	r3hdm1	90	81.943	ENSMZEG00005003157	r3hdm1	100	81.943	Maylandia_zebra
ENSSMAG00000001669	r3hdm1	99	43.734	ENSMGAG00000012461	R3HDM1	99	44.027	Meleagris_gallopavo
ENSSMAG00000001669	r3hdm1	99	43.515	ENSMAUG00000010315	R3hdm1	100	62.069	Mesocricetus_auratus
ENSSMAG00000001669	r3hdm1	99	44.560	ENSMICG00000005900	-	99	60.270	Microcebus_murinus
ENSSMAG00000001669	r3hdm1	91	43.316	ENSMODG00000000923	R3HDM1	97	43.505	Monodelphis_domestica
ENSSMAG00000001669	r3hdm1	100	79.875	ENSMALG00000009000	r3hdm1	100	79.786	Monopterus_albus
ENSSMAG00000001669	r3hdm1	99	42.477	MGP_CAROLIEiJ_G0014543	R3hdm1	100	62.069	Mus_caroli
ENSSMAG00000001669	r3hdm1	99	42.525	ENSMUSG00000056211	R3hdm1	100	62.069	Mus_musculus
ENSSMAG00000001669	r3hdm1	99	42.276	MGP_PahariEiJ_G0027779	R3hdm1	100	62.069	Mus_pahari
ENSSMAG00000001669	r3hdm1	99	42.525	MGP_SPRETEiJ_G0015350	R3hdm1	100	62.069	Mus_spretus
ENSSMAG00000001669	r3hdm1	99	44.905	ENSMPUG00000002412	R3HDM1	99	45.150	Mustela_putorius_furo
ENSSMAG00000001669	r3hdm1	99	45.022	ENSMLUG00000013824	R3HDM1	99	45.150	Myotis_lucifugus
ENSSMAG00000001669	r3hdm1	99	44.606	ENSNLEG00000008622	R3HDM1	99	60.541	Nomascus_leucogenys
ENSSMAG00000001669	r3hdm1	85	40.518	ENSMEUG00000011784	R3HDM1	93	40.400	Notamacropus_eugenii
ENSSMAG00000001669	r3hdm1	99	42.092	ENSODEG00000008607	R3HDM1	100	62.069	Octodon_degus
ENSSMAG00000001669	r3hdm1	95	78.827	ENSONIG00000012017	r3hdm1	99	78.827	Oreochromis_niloticus
ENSSMAG00000001669	r3hdm1	51	52.381	ENSOANG00000007987	R3HDM1	99	43.771	Ornithorhynchus_anatinus
ENSSMAG00000001669	r3hdm1	91	46.242	ENSOCUG00000017366	R3HDM1	98	46.591	Oryctolagus_cuniculus
ENSSMAG00000001669	r3hdm1	90	70.397	ENSORLG00000004297	r3hdm1	100	71.109	Oryzias_latipes
ENSSMAG00000001669	r3hdm1	90	70.949	ENSORLG00015017355	r3hdm1	100	71.640	Oryzias_latipes_hsok
ENSSMAG00000001669	r3hdm1	99	44.166	ENSOGAG00000003136	R3HDM1	99	45.086	Otolemur_garnettii
ENSSMAG00000001669	r3hdm1	99	44.905	ENSOARG00000010788	R3HDM1	99	45.564	Ovis_aries
ENSSMAG00000001669	r3hdm1	99	45.203	ENSPPAG00000027858	R3HDM1	99	60.541	Pan_paniscus
ENSSMAG00000001669	r3hdm1	99	44.473	ENSPPRG00000002626	R3HDM1	99	60.000	Panthera_pardus
ENSSMAG00000001669	r3hdm1	99	44.560	ENSPTIG00000016581	R3HDM1	99	60.270	Panthera_tigris_altaica
ENSSMAG00000001669	r3hdm1	99	45.203	ENSPTRG00000012494	R3HDM1	99	60.541	Pan_troglodytes
ENSSMAG00000001669	r3hdm1	99	44.521	ENSPANG00000026448	R3HDM1	99	60.541	Papio_anubis
ENSSMAG00000001669	r3hdm1	89	73.179	ENSPKIG00000004328	r3hdm1	89	72.277	Paramormyrops_kingsleyae
ENSSMAG00000001669	r3hdm1	99	43.515	ENSPSIG00000012915	R3HDM1	99	44.045	Pelodiscus_sinensis
ENSSMAG00000001669	r3hdm1	99	42.774	ENSPEMG00000015187	R3hdm1	100	62.069	Peromyscus_maniculatus_bairdii
ENSSMAG00000001669	r3hdm1	99	43.969	ENSPCIG00000002491	R3HDM1	99	43.980	Phascolarctos_cinereus
ENSSMAG00000001669	r3hdm1	90	71.482	ENSPFOG00000015036	r3hdm1	100	71.388	Poecilia_formosa
ENSSMAG00000001669	r3hdm1	90	74.569	ENSPLAG00000018042	r3hdm1	100	74.468	Poecilia_latipinna
ENSSMAG00000001669	r3hdm1	90	74.190	ENSPMEG00000023947	r3hdm1	100	74.089	Poecilia_mexicana
ENSSMAG00000001669	r3hdm1	90	74.608	ENSPREG00000007902	r3hdm1	100	74.608	Poecilia_reticulata
ENSSMAG00000001669	r3hdm1	99	43.526	ENSPPYG00000012815	R3HDM1	99	44.512	Pongo_abelii
ENSSMAG00000001669	r3hdm1	94	42.033	ENSPCAG00000006208	R3HDM1	75	69.778	Procavia_capensis
ENSSMAG00000001669	r3hdm1	99	44.125	ENSPCOG00000012698	R3HDM1	95	64.780	Propithecus_coquereli
ENSSMAG00000001669	r3hdm1	99	39.896	ENSPVAG00000006098	R3HDM1	90	48.926	Pteropus_vampyrus
ENSSMAG00000001669	r3hdm1	88	70.347	ENSPNAG00000005436	R3HDM1	98	71.854	Pygocentrus_nattereri
ENSSMAG00000001669	r3hdm1	87	71.246	ENSPNAG00000013952	r3hdm1	92	50.182	Pygocentrus_nattereri
ENSSMAG00000001669	r3hdm1	99	42.821	ENSRNOG00000004099	R3hdm1	99	43.525	Rattus_norvegicus
ENSSMAG00000001669	r3hdm1	99	44.090	ENSRBIG00000033317	R3HDM1	99	71.636	Rhinopithecus_bieti
ENSSMAG00000001669	r3hdm1	99	44.606	ENSRROG00000034534	R3HDM1	99	60.541	Rhinopithecus_roxellana
ENSSMAG00000001669	r3hdm1	99	45.205	ENSSBOG00000020389	R3HDM1	99	61.351	Saimiri_boliviensis_boliviensis
ENSSMAG00000001669	r3hdm1	99	44.110	ENSSHAG00000016999	R3HDM1	99	44.120	Sarcophilus_harrisii
ENSSMAG00000001669	r3hdm1	99	47.105	ENSSFOG00015019851	-	98	57.115	Scleropages_formosus
ENSSMAG00000001669	r3hdm1	86	74.074	ENSSFOG00015014134	r3hdm1	99	50.000	Scleropages_formosus
ENSSMAG00000001669	r3hdm1	90	85.728	ENSSDUG00000010749	r3hdm1	100	86.119	Seriola_dumerili
ENSSMAG00000001669	r3hdm1	100	84.731	ENSSLDG00000004499	r3hdm1	100	84.907	Seriola_lalandi_dorsalis
ENSSMAG00000001669	r3hdm1	99	43.415	ENSSPUG00000004167	R3HDM1	99	44.330	Sphenodon_punctatus
ENSSMAG00000001669	r3hdm1	90	85.029	ENSSPAG00000004648	r3hdm1	100	85.029	Stegastes_partitus
ENSSMAG00000001669	r3hdm1	94	57.221	ENSSSCG00000015692	R3HDM1	99	57.221	Sus_scrofa
ENSSMAG00000001669	r3hdm1	90	75.226	ENSTRUG00000011654	r3hdm1	99	75.226	Takifugu_rubripes
ENSSMAG00000001669	r3hdm1	89	68.297	ENSTNIG00000010362	r3hdm1	99	69.442	Tetraodon_nigroviridis
ENSSMAG00000001669	r3hdm1	89	49.390	ENSTTRG00000003935	R3HDM1	84	49.879	Tursiops_truncatus
ENSSMAG00000001669	r3hdm1	65	61.081	ENSUAMG00000024806	R3HDM1	93	60.270	Ursus_americanus
ENSSMAG00000001669	r3hdm1	99	44.614	ENSUMAG00000005552	R3HDM1	99	60.270	Ursus_maritimus
ENSSMAG00000001669	r3hdm1	91	44.466	ENSVPAG00000007333	R3HDM1	87	44.347	Vicugna_pacos
ENSSMAG00000001669	r3hdm1	99	45.063	ENSVVUG00000006457	R3HDM1	99	45.179	Vulpes_vulpes
ENSSMAG00000001669	r3hdm1	90	42.697	ENSXETG00000019330	r3hdm1	99	43.425	Xenopus_tropicalis
ENSSMAG00000001669	r3hdm1	70	70.130	ENSXCOG00000017448	r3hdm1	93	70.634	Xiphophorus_couchianus
ENSSMAG00000001669	r3hdm1	90	73.706	ENSXMAG00000007885	r3hdm1	97	74.213	Xiphophorus_maculatus