EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000001745 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 8640 bases
Position: chr7:19571595-19580234
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000002802	RRM_1	PF00076.22	9.4e-32	1	2
ENSSMAP00000002802	RRM_1	PF00076.22	9.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000002851	-	1149	-	ENSSMAP00000002802	334 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000001745's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000001745's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000001745	trnau1apb	51	55.556	ENSSMAG00000020851	trnau1apa	95	41.141
ENSSMAG00000001745	trnau1apb	51	31.609	ENSSMAG00000020230	-	90	30.814

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000001745	trnau1apb	99	75.964	ENSAPOG00000010086	trnau1apb	99	75.964	Acanthochromis_polyacanthus
ENSSMAG00000001745	trnau1apb	99	80.655	ENSACIG00000001863	trnau1apb	99	78.635	Amphilophus_citrinellus
ENSSMAG00000001745	trnau1apb	99	88.791	ENSAOCG00000011891	trnau1apb	99	89.086	Amphiprion_ocellaris
ENSSMAG00000001745	trnau1apb	99	72.917	ENSAPEG00000008029	trnau1apb	99	89.614	Amphiprion_percula
ENSSMAG00000001745	trnau1apb	99	87.906	ENSATEG00000002196	trnau1apb	99	87.906	Anabas_testudineus
ENSSMAG00000001745	trnau1apb	99	80.000	ENSACLG00000003016	trnau1apb	99	78.006	Astatotilapia_calliptera
ENSSMAG00000001745	trnau1apb	98	64.048	ENSAMXG00000001805	trnau1apb	97	64.848	Astyanax_mexicanus
ENSSMAG00000001745	trnau1apb	98	85.801	ENSCSEG00000018215	trnau1apb	97	81.873	Cynoglossus_semilaevis
ENSSMAG00000001745	trnau1apb	95	72.256	ENSCVAG00000017866	trnau1apb	99	76.829	Cyprinodon_variegatus
ENSSMAG00000001745	trnau1apb	98	64.545	ENSDARG00000056475	trnau1apb	97	65.758	Danio_rerio
ENSSMAG00000001745	trnau1apb	100	62.908	ENSELUG00000016683	trnau1apb	98	64.095	Esox_lucius
ENSSMAG00000001745	trnau1apb	99	79.651	ENSFHEG00000001267	trnau1apb	99	79.942	Fundulus_heteroclitus
ENSSMAG00000001745	trnau1apb	99	71.633	ENSGMOG00000001160	trnau1apb	99	75.595	Gadus_morhua
ENSSMAG00000001745	trnau1apb	99	80.415	ENSGACG00000014944	trnau1apb	99	80.415	Gasterosteus_aculeatus
ENSSMAG00000001745	trnau1apb	71	39.167	ENSGAGG00000022384	-	78	37.917	Gopherus_agassizii
ENSSMAG00000001745	trnau1apb	99	87.021	ENSHBUG00000018944	trnau1apb	99	86.136	Haplochromis_burtoni
ENSSMAG00000001745	trnau1apb	69	82.609	ENSHCOG00000011350	trnau1apb	78	80.000	Hippocampus_comes
ENSSMAG00000001745	trnau1apb	98	60.843	ENSIPUG00000008843	tsp1l	98	66.061	Ictalurus_punctatus
ENSSMAG00000001745	trnau1apb	66	89.954	ENSKMAG00000010082	trnau1apb	99	81.232	Kryptolebias_marmoratus
ENSSMAG00000001745	trnau1apb	99	86.310	ENSLBEG00000020480	trnau1apb	99	87.202	Labrus_bergylta
ENSSMAG00000001745	trnau1apb	100	53.097	ENSLOCG00000013175	trnau1apb	98	54.006	Lepisosteus_oculatus
ENSSMAG00000001745	trnau1apb	99	87.906	ENSMAMG00000012192	trnau1apb	99	87.941	Mastacembelus_armatus
ENSSMAG00000001745	trnau1apb	99	87.021	ENSMZEG00005014852	trnau1apb	99	86.136	Maylandia_zebra
ENSSMAG00000001745	trnau1apb	71	36.250	ENSMGAG00000003234	-	98	36.777	Meleagris_gallopavo
ENSSMAG00000001745	trnau1apb	98	75.581	ENSMMOG00000021521	trnau1apb	100	74.783	Mola_mola
ENSSMAG00000001745	trnau1apb	99	73.134	ENSMALG00000003772	trnau1apb	99	70.746	Monopterus_albus
ENSSMAG00000001745	trnau1apb	98	81.571	ENSNBRG00000000751	trnau1apb	99	79.518	Neolamprologus_brichardi
ENSSMAG00000001745	trnau1apb	99	77.778	ENSONIG00000016639	trnau1apb	99	75.749	Oreochromis_niloticus
ENSSMAG00000001745	trnau1apb	67	89.286	ENSORLG00000013265	trnau1apb	99	80.175	Oryzias_latipes
ENSSMAG00000001745	trnau1apb	99	79.883	ENSORLG00020004464	trnau1apb	99	80.645	Oryzias_latipes_hni
ENSSMAG00000001745	trnau1apb	99	79.883	ENSORLG00015021098	trnau1apb	99	77.126	Oryzias_latipes_hsok
ENSSMAG00000001745	trnau1apb	67	89.732	ENSOMEG00000016531	trnau1apb	99	79.592	Oryzias_melastigma
ENSSMAG00000001745	trnau1apb	100	57.440	ENSPKIG00000007995	trnau1apb	98	59.238	Paramormyrops_kingsleyae
ENSSMAG00000001745	trnau1apb	71	40.417	ENSPSIG00000004189	-	77	38.017	Pelodiscus_sinensis
ENSSMAG00000001745	trnau1apb	99	62.393	ENSPMGG00000018509	trnau1apb	97	79.167	Periophthalmus_magnuspinnatus
ENSSMAG00000001745	trnau1apb	99	79.651	ENSPFOG00000003938	trnau1apb	99	79.360	Poecilia_formosa
ENSSMAG00000001745	trnau1apb	99	79.651	ENSPLAG00000015480	trnau1apb	99	79.360	Poecilia_latipinna
ENSSMAG00000001745	trnau1apb	99	79.651	ENSPMEG00000012743	trnau1apb	99	79.360	Poecilia_mexicana
ENSSMAG00000001745	trnau1apb	99	78.779	ENSPREG00000015035	trnau1apb	99	78.488	Poecilia_reticulata
ENSSMAG00000001745	trnau1apb	99	77.353	ENSPNYG00000012127	trnau1apb	99	75.367	Pundamilia_nyererei
ENSSMAG00000001745	trnau1apb	98	63.798	ENSPNAG00000019138	trnau1apb	97	66.163	Pygocentrus_nattereri
ENSSMAG00000001745	trnau1apb	100	60.767	ENSSFOG00015014158	trnau1apb	99	61.988	Scleropages_formosus
ENSSMAG00000001745	trnau1apb	100	90.588	ENSSDUG00000011109	trnau1apb	100	90.588	Seriola_dumerili
ENSSMAG00000001745	trnau1apb	100	90.882	ENSSLDG00000012947	trnau1apb	100	90.882	Seriola_lalandi_dorsalis
ENSSMAG00000001745	trnau1apb	71	32.422	ENSSPUG00000016701	-	82	34.000	Sphenodon_punctatus
ENSSMAG00000001745	trnau1apb	99	89.381	ENSSPAG00000006917	trnau1apb	99	89.381	Stegastes_partitus
ENSSMAG00000001745	trnau1apb	99	77.126	ENSTRUG00000008608	trnau1apb	99	77.941	Takifugu_rubripes
ENSSMAG00000001745	trnau1apb	99	67.964	ENSTNIG00000000916	trnau1apb	99	65.766	Tetraodon_nigroviridis
ENSSMAG00000001745	trnau1apb	94	67.398	ENSXCOG00000007974	trnau1apb	94	71.385	Xiphophorus_couchianus
ENSSMAG00000001745	trnau1apb	99	79.360	ENSXMAG00000029918	trnau1apb	99	79.070	Xiphophorus_maculatus