EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000001761 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 11501 bases
Position: chr1:2215146-2226646
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000002861	RRM_1	PF00076.22	3.3e-30	1	2
ENSSMAP00000002861	RRM_1	PF00076.22	3.3e-30	2	2
ENSSMAP00000002873	RRM_1	PF00076.22	7.8e-30	1	2
ENSSMAP00000002873	RRM_1	PF00076.22	7.8e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000002909	-	1212	-	ENSSMAP00000002861	403 (aa)	-	-
ENSSMAT00000002924	-	3223	-	ENSSMAP00000002873	529 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000001761's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000001761's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000001761	pspc1	77	64.907	ENSSMAG00000018201	sfpq	64	52.693

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000001761	pspc1	82	76.970	ENSG00000121390	PSPC1	87	75.072	Homo_sapiens
ENSSMAG00000001761	pspc1	100	83.521	ENSAPOG00000015946	pspc1	100	83.895	Acanthochromis_polyacanthus
ENSSMAG00000001761	pspc1	86	75.072	ENSAMEG00000017420	PSPC1	88	67.155	Ailuropoda_melanoleuca
ENSSMAG00000001761	pspc1	100	75.330	ENSACIG00000018695	pspc1	100	74.765	Amphilophus_citrinellus
ENSSMAG00000001761	pspc1	100	82.649	ENSAOCG00000005279	pspc1	100	83.396	Amphiprion_ocellaris
ENSSMAG00000001761	pspc1	100	83.114	ENSAPEG00000015927	pspc1	100	83.865	Amphiprion_percula
ENSSMAG00000001761	pspc1	100	70.919	ENSATEG00000004878	pspc1	100	71.670	Anabas_testudineus
ENSSMAG00000001761	pspc1	68	76.190	ENSAPLG00000006246	PSPC1	100	65.385	Anas_platyrhynchos
ENSSMAG00000001761	pspc1	89	61.957	ENSAPLG00000003643	SFPQ	87	52.033	Anas_platyrhynchos
ENSSMAG00000001761	pspc1	82	75.758	ENSACAG00000002093	PSPC1	99	60.289	Anolis_carolinensis
ENSSMAG00000001761	pspc1	79	60.976	ENSACAG00000013307	-	65	52.184	Anolis_carolinensis
ENSSMAG00000001761	pspc1	86	74.928	ENSANAG00000000059	PSPC1	88	72.443	Aotus_nancymaae
ENSSMAG00000001761	pspc1	100	73.208	ENSACLG00000027220	pspc1	100	72.795	Astatotilapia_calliptera
ENSSMAG00000001761	pspc1	100	67.276	ENSAMXG00000036881	pspc1	100	68.762	Astyanax_mexicanus
ENSSMAG00000001761	pspc1	86	74.212	ENSBTAG00000003934	PSPC1	88	66.946	Bos_taurus
ENSSMAG00000001761	pspc1	86	74.928	ENSCJAG00000004554	PSPC1	93	66.000	Callithrix_jacchus
ENSSMAG00000001761	pspc1	82	76.970	ENSCAFG00020002009	PSPC1	87	75.072	Canis_lupus_dingo
ENSSMAG00000001761	pspc1	86	74.212	ENSCHIG00000016708	PSPC1	88	66.946	Capra_hircus
ENSSMAG00000001761	pspc1	67	69.118	ENSTSYG00000032882	PSPC1	88	58.950	Carlito_syrichta
ENSSMAG00000001761	pspc1	82	76.970	ENSCPOG00000000395	PSPC1	91	73.611	Cavia_porcellus
ENSSMAG00000001761	pspc1	86	74.928	ENSCCAG00000033498	PSPC1	93	66.200	Cebus_capucinus
ENSSMAG00000001761	pspc1	82	76.970	ENSCATG00000036434	PSPC1	94	75.072	Cercocebus_atys
ENSSMAG00000001761	pspc1	69	76.157	ENSCLAG00000005241	PSPC1	92	65.734	Chinchilla_lanigera
ENSSMAG00000001761	pspc1	85	75.581	ENSCHOG00000008913	PSPC1	96	60.735	Choloepus_hoffmanni
ENSSMAG00000001761	pspc1	82	75.455	ENSCPBG00000020859	PSPC1	88	66.385	Chrysemys_picta_bellii
ENSSMAG00000001761	pspc1	78	53.165	ENSCSAVG00000003533	-	68	49.171	Ciona_savignyi
ENSSMAG00000001761	pspc1	67	78.598	ENSCANG00000018948	PSPC1	87	78.598	Colobus_angolensis_palliatus
ENSSMAG00000001761	pspc1	86	75.145	ENSCGRG00001018368	Pspc1	96	64.023	Cricetulus_griseus_chok1gshd
ENSSMAG00000001761	pspc1	86	75.145	ENSCGRG00000011724	Pspc1	96	64.023	Cricetulus_griseus_crigri
ENSSMAG00000001761	pspc1	100	73.913	ENSCVAG00000007679	-	100	74.102	Cyprinodon_variegatus
ENSSMAG00000001761	pspc1	100	62.018	ENSDARG00000006621	pspc1	100	66.506	Danio_rerio
ENSSMAG00000001761	pspc1	82	76.970	ENSDNOG00000011078	PSPC1	96	64.093	Dasypus_novemcinctus
ENSSMAG00000001761	pspc1	86	71.470	ENSDORG00000016050	Pspc1	96	62.162	Dipodomys_ordii
ENSSMAG00000001761	pspc1	54	75.248	ENSETEG00000000502	-	60	75.248	Echinops_telfairi
ENSSMAG00000001761	pspc1	70	43.464	ENSEBUG00000010133	pspc1	72	45.455	Eptatretus_burgeri
ENSSMAG00000001761	pspc1	92	52.601	ENSEBUG00000003964	-	70	59.039	Eptatretus_burgeri
ENSSMAG00000001761	pspc1	82	76.970	ENSEASG00005000119	PSPC1	92	70.079	Equus_asinus_asinus
ENSSMAG00000001761	pspc1	82	76.970	ENSECAG00000017286	PSPC1	92	70.079	Equus_caballus
ENSSMAG00000001761	pspc1	64	67.568	ENSEEUG00000011288	-	57	63.481	Erinaceus_europaeus
ENSSMAG00000001761	pspc1	100	67.935	ENSELUG00000003746	pspc1	100	68.354	Esox_lucius
ENSSMAG00000001761	pspc1	84	76.036	ENSFCAG00000027841	PSPC1	88	74.230	Felis_catus
ENSSMAG00000001761	pspc1	82	75.758	ENSFALG00000008750	PSPC1	90	65.567	Ficedula_albicollis
ENSSMAG00000001761	pspc1	88	73.130	ENSFDAG00000002617	PSPC1	90	67.364	Fukomys_damarensis
ENSSMAG00000001761	pspc1	100	61.070	ENSGMOG00000015074	pspc1	100	62.152	Gadus_morhua
ENSSMAG00000001761	pspc1	82	75.758	ENSGALG00000017142	PSPC1	88	66.385	Gallus_gallus
ENSSMAG00000001761	pspc1	94	73.643	ENSGAFG00000006327	pspc1	81	76.119	Gambusia_affinis
ENSSMAG00000001761	pspc1	100	70.888	ENSGACG00000014901	pspc1	99	77.562	Gasterosteus_aculeatus
ENSSMAG00000001761	pspc1	82	75.455	ENSGAGG00000019164	PSPC1	88	66.385	Gopherus_agassizii
ENSSMAG00000001761	pspc1	78	67.937	ENSGAGG00000017325	-	71	51.423	Gopherus_agassizii
ENSSMAG00000001761	pspc1	82	76.970	ENSGGOG00000003414	PSPC1	87	75.072	Gorilla_gorilla
ENSSMAG00000001761	pspc1	100	82.609	ENSHBUG00000001139	pspc1	100	82.987	Haplochromis_burtoni
ENSSMAG00000001761	pspc1	86	74.928	ENSHGLG00000018811	PSPC1	95	62.928	Heterocephalus_glaber_female
ENSSMAG00000001761	pspc1	71	78.746	ENSHGLG00100007962	PSPC1	92	76.744	Heterocephalus_glaber_male
ENSSMAG00000001761	pspc1	83	78.338	ENSHCOG00000013251	pspc1	99	71.895	Hippocampus_comes
ENSSMAG00000001761	pspc1	100	67.837	ENSIPUG00000013192	pspc1	100	68.207	Ictalurus_punctatus
ENSSMAG00000001761	pspc1	86	75.216	ENSSTOG00000026833	PSPC1	92	71.622	Ictidomys_tridecemlineatus
ENSSMAG00000001761	pspc1	82	76.667	ENSJJAG00000018334	Pspc1	88	66.736	Jaculus_jaculus
ENSSMAG00000001761	pspc1	100	59.699	ENSKMAG00000013525	-	98	70.588	Kryptolebias_marmoratus
ENSSMAG00000001761	pspc1	99	76.059	ENSLBEG00000004474	pspc1	100	79.798	Labrus_bergylta
ENSSMAG00000001761	pspc1	100	58.759	ENSLACG00000010762	PSPC1	100	60.727	Latimeria_chalumnae
ENSSMAG00000001761	pspc1	100	64.182	ENSLOCG00000010832	pspc1	99	64.599	Lepisosteus_oculatus
ENSSMAG00000001761	pspc1	85	75.072	ENSLAFG00000010968	PSPC1	96	63.830	Loxodonta_africana
ENSSMAG00000001761	pspc1	82	76.970	ENSMFAG00000032728	PSPC1	96	75.358	Macaca_fascicularis
ENSSMAG00000001761	pspc1	84	75.811	ENSMMUG00000020262	PSPC1	95	74.302	Macaca_mulatta
ENSSMAG00000001761	pspc1	82	76.970	ENSMNEG00000027401	PSPC1	85	72.127	Macaca_nemestrina
ENSSMAG00000001761	pspc1	67	78.439	ENSMLEG00000039043	PSPC1	94	66.427	Mandrillus_leucophaeus
ENSSMAG00000001761	pspc1	100	79.705	ENSMAMG00000004333	pspc1	100	80.443	Mastacembelus_armatus
ENSSMAG00000001761	pspc1	100	73.208	ENSMZEG00005005726	pspc1	100	72.795	Maylandia_zebra
ENSSMAG00000001761	pspc1	68	76.000	ENSMGAG00000015134	PSPC1	100	65.311	Meleagris_gallopavo
ENSSMAG00000001761	pspc1	86	68.497	ENSMAUG00000021067	Pspc1	94	60.976	Mesocricetus_auratus
ENSSMAG00000001761	pspc1	86	74.640	ENSMICG00000013970	PSPC1	88	74.286	Microcebus_murinus
ENSSMAG00000001761	pspc1	85	74.928	ENSMOCG00000006060	Pspc1	88	66.527	Microtus_ochrogaster
ENSSMAG00000001761	pspc1	86	61.561	ENSMMOG00000004352	pspc1	71	78.571	Mola_mola
ENSSMAG00000001761	pspc1	85	74.425	ENSMODG00000008029	PSPC1	73	66.597	Monodelphis_domestica
ENSSMAG00000001761	pspc1	100	77.883	ENSMALG00000008914	pspc1	100	77.883	Monopterus_albus
ENSSMAG00000001761	pspc1	86	74.286	MGP_CAROLIEiJ_G0019341	Pspc1	86	71.883	Mus_caroli
ENSSMAG00000001761	pspc1	86	74.286	ENSMUSG00000021938	Pspc1	86	71.883	Mus_musculus
ENSSMAG00000001761	pspc1	86	74.286	MGP_PahariEiJ_G0030359	Pspc1	86	71.883	Mus_pahari
ENSSMAG00000001761	pspc1	86	74.286	MGP_SPRETEiJ_G0020232	Pspc1	86	71.883	Mus_spretus
ENSSMAG00000001761	pspc1	82	76.970	ENSMPUG00000013347	PSPC1	95	63.688	Mustela_putorius_furo
ENSSMAG00000001761	pspc1	82	75.976	ENSMLUG00000017663	PSPC1	95	62.900	Myotis_lucifugus
ENSSMAG00000001761	pspc1	86	74.286	ENSNGAG00000011271	Pspc1	88	66.946	Nannospalax_galili
ENSSMAG00000001761	pspc1	93	71.244	ENSNBRG00000014059	pspc1	92	74.815	Neolamprologus_brichardi
ENSSMAG00000001761	pspc1	82	76.970	ENSNLEG00000001294	PSPC1	88	67.155	Nomascus_leucogenys
ENSSMAG00000001761	pspc1	82	63.363	ENSODEG00000007817	-	94	55.058	Octodon_degus
ENSSMAG00000001761	pspc1	82	69.697	ENSODEG00000019012	-	95	58.175	Octodon_degus
ENSSMAG00000001761	pspc1	100	84.310	ENSONIG00000012010	pspc1	99	84.310	Oreochromis_niloticus
ENSSMAG00000001761	pspc1	67	78.439	ENSOANG00000009017	-	100	66.187	Ornithorhynchus_anatinus
ENSSMAG00000001761	pspc1	86	60.632	ENSOANG00000011381	-	94	53.236	Ornithorhynchus_anatinus
ENSSMAG00000001761	pspc1	82	76.970	ENSOCUG00000006153	PSPC1	96	64.093	Oryctolagus_cuniculus
ENSSMAG00000001761	pspc1	100	74.858	ENSORLG00000004232	-	100	76.038	Oryzias_latipes
ENSSMAG00000001761	pspc1	100	75.047	ENSORLG00020000578	PSPC1	100	76.226	Oryzias_latipes_hni
ENSSMAG00000001761	pspc1	100	74.858	ENSORLG00015017480	pspc1	100	76.038	Oryzias_latipes_hsok
ENSSMAG00000001761	pspc1	52	88.095	ENSOMEG00000003779	pspc1	95	87.923	Oryzias_melastigma
ENSSMAG00000001761	pspc1	85	74.855	ENSOGAG00000012643	PSPC1	96	64.286	Otolemur_garnettii
ENSSMAG00000001761	pspc1	82	75.749	ENSOARG00000014163	PSPC1	96	64.315	Ovis_aries
ENSSMAG00000001761	pspc1	82	77.108	ENSPPAG00000009836	PSPC1	96	75.287	Pan_paniscus
ENSSMAG00000001761	pspc1	82	76.970	ENSPPRG00000008833	PSPC1	88	67.155	Panthera_pardus
ENSSMAG00000001761	pspc1	67	78.067	ENSPTIG00000016917	PSPC1	84	66.427	Panthera_tigris_altaica
ENSSMAG00000001761	pspc1	82	76.970	ENSPTRG00000005677	PSPC1	87	75.072	Pan_troglodytes
ENSSMAG00000001761	pspc1	82	76.970	ENSPANG00000001992	PSPC1	94	75.358	Papio_anubis
ENSSMAG00000001761	pspc1	100	67.706	ENSPKIG00000003578	pspc1	100	68.624	Paramormyrops_kingsleyae
ENSSMAG00000001761	pspc1	82	74.545	ENSPSIG00000005168	PSPC1	88	64.927	Pelodiscus_sinensis
ENSSMAG00000001761	pspc1	73	80.272	ENSPMGG00000015135	pspc1	98	71.866	Periophthalmus_magnuspinnatus
ENSSMAG00000001761	pspc1	86	74.286	ENSPEMG00000015214	Pspc1	88	66.736	Peromyscus_maniculatus_bairdii
ENSSMAG00000001761	pspc1	66	42.435	ENSPMAG00000004618	pspc1	93	40.952	Petromyzon_marinus
ENSSMAG00000001761	pspc1	85	74.425	ENSPCIG00000017680	PSPC1	95	63.810	Phascolarctos_cinereus
ENSSMAG00000001761	pspc1	99	76.371	ENSPFOG00000003362	pspc1	100	77.127	Poecilia_formosa
ENSSMAG00000001761	pspc1	100	76.404	ENSPLAG00000011540	pspc1	100	77.154	Poecilia_latipinna
ENSSMAG00000001761	pspc1	100	76.217	ENSPMEG00000008322	pspc1	100	76.966	Poecilia_mexicana
ENSSMAG00000001761	pspc1	100	75.843	ENSPREG00000007786	pspc1	100	76.592	Poecilia_reticulata
ENSSMAG00000001761	pspc1	82	76.970	ENSPPYG00000005186	PSPC1	92	67.105	Pongo_abelii
ENSSMAG00000001761	pspc1	61	80.357	ENSPCAG00000008314	-	50	80.588	Procavia_capensis
ENSSMAG00000001761	pspc1	87	74.359	ENSPCOG00000014364	PSPC1	95	60.811	Propithecus_coquereli
ENSSMAG00000001761	pspc1	82	76.667	ENSPVAG00000005036	PSPC1	94	64.497	Pteropus_vampyrus
ENSSMAG00000001761	pspc1	100	73.585	ENSPNYG00000008893	pspc1	100	73.171	Pundamilia_nyererei
ENSSMAG00000001761	pspc1	100	67.844	ENSPNAG00000016511	pspc1	100	68.216	Pygocentrus_nattereri
ENSSMAG00000001761	pspc1	86	74.571	ENSRNOG00000020782	Pspc1	86	71.883	Rattus_norvegicus
ENSSMAG00000001761	pspc1	86	74.785	ENSRBIG00000036057	PSPC1	96	74.785	Rhinopithecus_bieti
ENSSMAG00000001761	pspc1	86	74.785	ENSRROG00000036334	PSPC1	87	74.785	Rhinopithecus_roxellana
ENSSMAG00000001761	pspc1	69	77.256	ENSSBOG00000028172	PSPC1	89	77.256	Saimiri_boliviensis_boliviensis
ENSSMAG00000001761	pspc1	85	67.714	ENSSHAG00000004696	PSPC1	95	59.393	Sarcophilus_harrisii
ENSSMAG00000001761	pspc1	83	81.381	ENSSFOG00015001395	pspc1	99	73.795	Scleropages_formosus
ENSSMAG00000001761	pspc1	100	84.182	ENSSDUG00000010651	pspc1	100	84.182	Seriola_dumerili
ENSSMAG00000001761	pspc1	100	75.992	ENSSLDG00000004284	pspc1	100	74.906	Seriola_lalandi_dorsalis
ENSSMAG00000001761	pspc1	82	69.091	ENSSARG00000000888	PSPC1	89	61.297	Sorex_araneus
ENSSMAG00000001761	pspc1	78	59.048	ENSSPUG00000001136	-	52	52.247	Sphenodon_punctatus
ENSSMAG00000001761	pspc1	82	65.758	ENSSPUG00000008550	PSPC1	99	51.465	Sphenodon_punctatus
ENSSMAG00000001761	pspc1	100	82.841	ENSSPAG00000001921	pspc1	100	83.210	Stegastes_partitus
ENSSMAG00000001761	pspc1	83	75.976	ENSSSCG00000009569	PSPC1	89	74.148	Sus_scrofa
ENSSMAG00000001761	pspc1	82	75.758	ENSTGUG00000011295	PSPC1	99	66.385	Taeniopygia_guttata
ENSSMAG00000001761	pspc1	100	71.321	ENSTRUG00000011335	pspc1	100	71.132	Takifugu_rubripes
ENSSMAG00000001761	pspc1	100	71.456	ENSTNIG00000010358	pspc1	100	71.456	Tetraodon_nigroviridis
ENSSMAG00000001761	pspc1	82	69.486	ENSTBEG00000002361	PSPC1	88	57.537	Tupaia_belangeri
ENSSMAG00000001761	pspc1	86	74.571	ENSTTRG00000003343	PSPC1	90	66.804	Tursiops_truncatus
ENSSMAG00000001761	pspc1	76	76.547	ENSUAMG00000012309	PSPC1	87	76.974	Ursus_americanus
ENSSMAG00000001761	pspc1	86	74.785	ENSUMAG00000013993	PSPC1	96	74.785	Ursus_maritimus
ENSSMAG00000001761	pspc1	67	78.439	ENSVPAG00000010029	PSPC1	100	66.667	Vicugna_pacos
ENSSMAG00000001761	pspc1	84	76.036	ENSVVUG00000006414	PSPC1	89	75.072	Vulpes_vulpes
ENSSMAG00000001761	pspc1	91	74.670	ENSXCOG00000017438	pspc1	93	77.612	Xiphophorus_couchianus
ENSSMAG00000001761	pspc1	91	74.934	ENSXMAG00000007929	pspc1	93	77.861	Xiphophorus_maculatus