EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000001932 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 158055 bases
Position: chr2:18830297-18988351
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000003191	TUDOR	PF00567.24	4.7e-26	1	1
ENSSMAP00000003191	SNase	PF00565.17	1.4e-64	1	4
ENSSMAP00000003191	SNase	PF00565.17	1.4e-64	2	4
ENSSMAP00000003191	SNase	PF00565.17	1.4e-64	3	4
ENSSMAP00000003191	SNase	PF00565.17	1.4e-64	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000003248	-	4424	-	ENSSMAP00000003191	964 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000001932's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000001932's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000001932	snd1	93	83.519	ENSG00000197157	SND1	98	83.781	Homo_sapiens
ENSSMAG00000001932	snd1	95	95.390	ENSAPOG00000017599	snd1	100	95.390	Acanthochromis_polyacanthus
ENSSMAG00000001932	snd1	95	82.424	ENSAMEG00000004664	SND1	93	83.705	Ailuropoda_melanoleuca
ENSSMAG00000001932	snd1	95	91.438	ENSACIG00000003551	snd1	100	91.438	Amphilophus_citrinellus
ENSSMAG00000001932	snd1	95	95.609	ENSAOCG00000014166	snd1	100	95.609	Amphiprion_ocellaris
ENSSMAG00000001932	snd1	95	95.390	ENSAPEG00000007067	snd1	100	95.390	Amphiprion_percula
ENSSMAG00000001932	snd1	93	94.295	ENSATEG00000018475	snd1	89	94.295	Anabas_testudineus
ENSSMAG00000001932	snd1	93	83.408	ENSANAG00000034463	SND1	99	83.634	Aotus_nancymaae
ENSSMAG00000001932	snd1	95	93.743	ENSACLG00000022897	snd1	100	93.743	Astatotilapia_calliptera
ENSSMAG00000001932	snd1	94	89.670	ENSAMXG00000016318	snd1	98	90.513	Astyanax_mexicanus
ENSSMAG00000001932	snd1	93	83.630	ENSBTAG00000010692	SND1	98	83.893	Bos_taurus
ENSSMAG00000001932	snd1	94	46.328	WBGene00006626	tsn-1	99	45.926	Caenorhabditis_elegans
ENSSMAG00000001932	snd1	93	83.408	ENSCJAG00000017668	SND1	99	83.634	Callithrix_jacchus
ENSSMAG00000001932	snd1	95	82.675	ENSCAFG00000001700	SND1	98	83.781	Canis_familiaris
ENSSMAG00000001932	snd1	95	82.675	ENSCAFG00020021639	SND1	98	83.781	Canis_lupus_dingo
ENSSMAG00000001932	snd1	93	83.519	ENSCHIG00000023390	SND1	98	83.781	Capra_hircus
ENSSMAG00000001932	snd1	66	86.316	ENSTSYG00000004979	SND1	96	86.316	Carlito_syrichta
ENSSMAG00000001932	snd1	92	73.649	ENSCAPG00000010677	SND1	97	73.649	Cavia_aperea
ENSSMAG00000001932	snd1	93	83.296	ENSCPOG00000006251	SND1	98	83.557	Cavia_porcellus
ENSSMAG00000001932	snd1	93	83.408	ENSCCAG00000036847	SND1	98	83.669	Cebus_capucinus
ENSSMAG00000001932	snd1	93	83.742	ENSCATG00000035214	SND1	99	83.973	Cercocebus_atys
ENSSMAG00000001932	snd1	93	83.781	ENSCLAG00000011796	SND1	98	83.781	Chinchilla_lanigera
ENSSMAG00000001932	snd1	93	83.742	ENSCSAG00000010182	SND1	98	84.004	Chlorocebus_sabaeus
ENSSMAG00000001932	snd1	73	75.248	ENSCHOG00000002218	SND1	85	75.000	Choloepus_hoffmanni
ENSSMAG00000001932	snd1	95	83.754	ENSCPBG00000018094	SND1	98	84.340	Chrysemys_picta_bellii
ENSSMAG00000001932	snd1	93	56.216	ENSCING00000000524	-	98	56.478	Ciona_intestinalis
ENSSMAG00000001932	snd1	94	57.065	ENSCSAVG00000008807	-	98	57.572	Ciona_savignyi
ENSSMAG00000001932	snd1	93	83.742	ENSCANG00000035119	SND1	98	84.004	Colobus_angolensis_palliatus
ENSSMAG00000001932	snd1	93	83.408	ENSCGRG00001022514	Snd1	98	83.669	Cricetulus_griseus_chok1gshd
ENSSMAG00000001932	snd1	92	83.634	ENSCGRG00000012277	Snd1	99	83.634	Cricetulus_griseus_crigri
ENSSMAG00000001932	snd1	95	93.853	ENSCSEG00000008661	snd1	100	93.853	Cynoglossus_semilaevis
ENSSMAG00000001932	snd1	95	93.633	ENSCVAG00000010316	snd1	100	93.633	Cyprinodon_variegatus
ENSSMAG00000001932	snd1	95	89.595	ENSDARG00000006766	snd1	98	90.615	Danio_rerio
ENSSMAG00000001932	snd1	92	81.665	ENSDNOG00000006795	SND1	100	81.665	Dasypus_novemcinctus
ENSSMAG00000001932	snd1	93	83.296	ENSDORG00000000336	Snd1	98	83.557	Dipodomys_ordii
ENSSMAG00000001932	snd1	92	49.781	FBgn0035121	Tudor-SN	97	49.781	Drosophila_melanogaster
ENSSMAG00000001932	snd1	85	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSSMAG00000001932	snd1	57	67.027	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSSMAG00000001932	snd1	93	82.366	ENSEASG00005008513	SND1	98	82.618	Equus_asinus_asinus
ENSSMAG00000001932	snd1	93	83.519	ENSECAG00000011451	SND1	98	83.781	Equus_caballus
ENSSMAG00000001932	snd1	93	73.608	ENSEEUG00000014737	SND1	98	73.826	Erinaceus_europaeus
ENSSMAG00000001932	snd1	95	88.986	ENSELUG00000001805	snd1	97	88.986	Esox_lucius
ENSSMAG00000001932	snd1	95	82.566	ENSFCAG00000008289	SND1	98	83.669	Felis_catus
ENSSMAG00000001932	snd1	93	83.333	ENSFDAG00000015881	SND1	98	83.333	Fukomys_damarensis
ENSSMAG00000001932	snd1	95	91.837	ENSFHEG00000004093	snd1	99	93.288	Fundulus_heteroclitus
ENSSMAG00000001932	snd1	71	84.181	ENSGMOG00000018932	snd1	66	84.181	Gadus_morhua
ENSSMAG00000001932	snd1	95	94.512	ENSGAFG00000008421	snd1	100	94.512	Gambusia_affinis
ENSSMAG00000001932	snd1	95	61.346	ENSGACG00000019793	snd1	100	61.346	Gasterosteus_aculeatus
ENSSMAG00000001932	snd1	93	83.742	ENSGGOG00000009614	SND1	99	83.973	Gorilla_gorilla
ENSSMAG00000001932	snd1	95	93.633	ENSHBUG00000019135	snd1	98	94.183	Haplochromis_burtoni
ENSSMAG00000001932	snd1	93	83.073	ENSHGLG00000003618	SND1	98	83.333	Heterocephalus_glaber_female
ENSSMAG00000001932	snd1	94	82.450	ENSHGLG00100012449	SND1	99	83.333	Heterocephalus_glaber_male
ENSSMAG00000001932	snd1	95	93.194	ENSHCOG00000005266	snd1	100	93.194	Hippocampus_comes
ENSSMAG00000001932	snd1	94	88.145	ENSIPUG00000013279	snd1	99	88.145	Ictalurus_punctatus
ENSSMAG00000001932	snd1	93	83.519	ENSSTOG00000002140	SND1	98	83.781	Ictidomys_tridecemlineatus
ENSSMAG00000001932	snd1	93	83.630	ENSJJAG00000009561	Snd1	98	83.893	Jaculus_jaculus
ENSSMAG00000001932	snd1	95	94.402	ENSKMAG00000016997	snd1	100	94.402	Kryptolebias_marmoratus
ENSSMAG00000001932	snd1	95	95.630	ENSLBEG00000013563	snd1	100	94.841	Labrus_bergylta
ENSSMAG00000001932	snd1	93	87.748	ENSLOCG00000015537	snd1	98	87.929	Lepisosteus_oculatus
ENSSMAG00000001932	snd1	94	83.077	ENSLAFG00000009696	SND1	98	84.228	Loxodonta_africana
ENSSMAG00000001932	snd1	93	83.742	ENSMFAG00000038114	SND1	99	83.973	Macaca_fascicularis
ENSSMAG00000001932	snd1	93	83.742	ENSMMUG00000015432	SND1	98	84.004	Macaca_mulatta
ENSSMAG00000001932	snd1	93	83.742	ENSMNEG00000039808	SND1	100	83.991	Macaca_nemestrina
ENSSMAG00000001932	snd1	93	83.630	ENSMLEG00000029040	SND1	100	83.878	Mandrillus_leucophaeus
ENSSMAG00000001932	snd1	95	93.633	ENSMAMG00000011739	snd1	100	93.633	Mastacembelus_armatus
ENSSMAG00000001932	snd1	95	93.743	ENSMZEG00005005681	snd1	100	93.743	Maylandia_zebra
ENSSMAG00000001932	snd1	93	83.630	ENSMICG00000000097	SND1	98	83.893	Microcebus_murinus
ENSSMAG00000001932	snd1	93	83.853	ENSMOCG00000005040	Snd1	98	84.116	Microtus_ochrogaster
ENSSMAG00000001932	snd1	95	94.292	ENSMMOG00000001795	snd1	100	94.292	Mola_mola
ENSSMAG00000001932	snd1	93	82.851	ENSMODG00000015182	SND1	98	83.110	Monodelphis_domestica
ENSSMAG00000001932	snd1	95	94.182	ENSMALG00000012071	snd1	100	94.182	Monopterus_albus
ENSSMAG00000001932	snd1	93	83.669	MGP_CAROLIEiJ_G0028159	Snd1	96	86.135	Mus_caroli
ENSSMAG00000001932	snd1	93	83.445	ENSMUSG00000001424	Snd1	98	83.445	Mus_musculus
ENSSMAG00000001932	snd1	93	83.669	MGP_PahariEiJ_G0021917	Snd1	97	86.135	Mus_pahari
ENSSMAG00000001932	snd1	93	83.669	MGP_SPRETEiJ_G0029159	Snd1	97	84.746	Mus_spretus
ENSSMAG00000001932	snd1	95	82.566	ENSMPUG00000006545	SND1	98	83.669	Mustela_putorius_furo
ENSSMAG00000001932	snd1	92	82.497	ENSMLUG00000017130	SND1	99	82.497	Myotis_lucifugus
ENSSMAG00000001932	snd1	93	83.519	ENSNGAG00000011186	Snd1	98	83.781	Nannospalax_galili
ENSSMAG00000001932	snd1	95	93.524	ENSNBRG00000006681	snd1	100	93.524	Neolamprologus_brichardi
ENSSMAG00000001932	snd1	94	82.747	ENSNLEG00000012263	SND1	100	83.991	Nomascus_leucogenys
ENSSMAG00000001932	snd1	86	88.889	ENSOPRG00000013405	SND1	90	88.889	Ochotona_princeps
ENSSMAG00000001932	snd1	93	83.669	ENSODEG00000011502	SND1	98	83.669	Octodon_degus
ENSSMAG00000001932	snd1	97	92.949	ENSONIG00000011481	snd1	99	92.949	Oreochromis_niloticus
ENSSMAG00000001932	snd1	92	83.146	ENSOANG00000000817	SND1	98	83.146	Ornithorhynchus_anatinus
ENSSMAG00000001932	snd1	94	81.758	ENSOCUG00000001620	SND1	98	82.998	Oryctolagus_cuniculus
ENSSMAG00000001932	snd1	95	92.645	ENSORLG00000015201	snd1	100	92.645	Oryzias_latipes
ENSSMAG00000001932	snd1	95	92.865	ENSORLG00020013991	snd1	100	92.865	Oryzias_latipes_hni
ENSSMAG00000001932	snd1	95	92.865	ENSORLG00015012436	snd1	100	92.865	Oryzias_latipes_hsok
ENSSMAG00000001932	snd1	95	93.414	ENSOMEG00000006406	snd1	100	93.414	Oryzias_melastigma
ENSSMAG00000001932	snd1	93	83.556	ENSOGAG00000013356	SND1	92	83.817	Otolemur_garnettii
ENSSMAG00000001932	snd1	92	81.511	ENSOARG00000002149	SND1	100	81.511	Ovis_aries
ENSSMAG00000001932	snd1	93	83.630	ENSPPAG00000042947	SND1	99	83.860	Pan_paniscus
ENSSMAG00000001932	snd1	95	82.566	ENSPPRG00000004494	SND1	98	83.669	Panthera_pardus
ENSSMAG00000001932	snd1	95	82.456	ENSPTIG00000014214	SND1	98	83.557	Panthera_tigris_altaica
ENSSMAG00000001932	snd1	93	83.630	ENSPTRG00000023911	SND1	99	83.860	Pan_troglodytes
ENSSMAG00000001932	snd1	92	83.973	ENSPANG00000011997	SND1	99	83.973	Papio_anubis
ENSSMAG00000001932	snd1	93	86.203	ENSPKIG00000023494	snd1	98	86.459	Paramormyrops_kingsleyae
ENSSMAG00000001932	snd1	87	92.943	ENSPMGG00000003629	snd1	100	92.943	Periophthalmus_magnuspinnatus
ENSSMAG00000001932	snd1	93	83.630	ENSPEMG00000010240	Snd1	98	83.893	Peromyscus_maniculatus_bairdii
ENSSMAG00000001932	snd1	92	73.476	ENSPMAG00000007915	-	99	73.476	Petromyzon_marinus
ENSSMAG00000001932	snd1	93	83.408	ENSPCIG00000011561	SND1	98	83.669	Phascolarctos_cinereus
ENSSMAG00000001932	snd1	95	94.182	ENSPFOG00000001557	snd1	100	94.182	Poecilia_formosa
ENSSMAG00000001932	snd1	97	92.636	ENSPLAG00000018459	snd1	99	92.636	Poecilia_latipinna
ENSSMAG00000001932	snd1	95	94.402	ENSPMEG00000006803	snd1	100	94.402	Poecilia_mexicana
ENSSMAG00000001932	snd1	95	94.182	ENSPREG00000002189	snd1	100	94.182	Poecilia_reticulata
ENSSMAG00000001932	snd1	86	88.889	ENSPPYG00000017972	SND1	98	76.957	Pongo_abelii
ENSSMAG00000001932	snd1	93	73.719	ENSPCAG00000011305	SND1	98	73.937	Procavia_capensis
ENSSMAG00000001932	snd1	93	83.742	ENSPCOG00000026791	SND1	100	83.991	Propithecus_coquereli
ENSSMAG00000001932	snd1	93	81.292	ENSPVAG00000013945	SND1	98	81.544	Pteropus_vampyrus
ENSSMAG00000001932	snd1	95	93.633	ENSPNYG00000000932	snd1	100	93.633	Pundamilia_nyererei
ENSSMAG00000001932	snd1	94	89.670	ENSPNAG00000001206	snd1	98	90.290	Pygocentrus_nattereri
ENSSMAG00000001932	snd1	93	83.557	ENSRNOG00000031173	Snd1	100	82.437	Rattus_norvegicus
ENSSMAG00000001932	snd1	66	86.742	ENSRBIG00000027782	-	93	86.742	Rhinopithecus_bieti
ENSSMAG00000001932	snd1	95	81.987	ENSRROG00000033020	SND1	98	84.004	Rhinopithecus_roxellana
ENSSMAG00000001932	snd1	93	83.408	ENSSBOG00000032461	SND1	99	83.634	Saimiri_boliviensis_boliviensis
ENSSMAG00000001932	snd1	92	80.112	ENSSHAG00000015359	SND1	100	80.112	Sarcophilus_harrisii
ENSSMAG00000001932	snd1	93	87.251	ENSSFOG00015001103	snd1	98	87.251	Scleropages_formosus
ENSSMAG00000001932	snd1	99	93.375	ENSSDUG00000002699	snd1	99	93.375	Seriola_dumerili
ENSSMAG00000001932	snd1	95	88.694	ENSSLDG00000001950	snd1	100	88.694	Seriola_lalandi_dorsalis
ENSSMAG00000001932	snd1	81	78.940	ENSSARG00000004877	SND1	92	78.940	Sorex_araneus
ENSSMAG00000001932	snd1	66	80.416	ENSSPUG00000017586	SND1	96	80.416	Sphenodon_punctatus
ENSSMAG00000001932	snd1	69	95.431	ENSSPAG00000021398	snd1	99	95.431	Stegastes_partitus
ENSSMAG00000001932	snd1	93	83.296	ENSSSCG00000016590	SND1	98	83.557	Sus_scrofa
ENSSMAG00000001932	snd1	92	97.222	ENSTRUG00000014067	snd1	100	92.097	Takifugu_rubripes
ENSSMAG00000001932	snd1	95	91.767	ENSTNIG00000011019	snd1	100	91.767	Tetraodon_nigroviridis
ENSSMAG00000001932	snd1	88	78.000	ENSTBEG00000003999	SND1	100	78.000	Tupaia_belangeri
ENSSMAG00000001932	snd1	93	79.176	ENSTTRG00000006059	SND1	98	79.418	Tursiops_truncatus
ENSSMAG00000001932	snd1	65	74.413	ENSUAMG00000002820	-	84	76.712	Ursus_americanus
ENSSMAG00000001932	snd1	82	83.270	ENSUAMG00000005604	-	93	83.270	Ursus_americanus
ENSSMAG00000001932	snd1	95	82.566	ENSUMAG00000005960	SND1	98	83.669	Ursus_maritimus
ENSSMAG00000001932	snd1	73	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSSMAG00000001932	snd1	95	82.566	ENSVVUG00000007226	SND1	98	83.669	Vulpes_vulpes
ENSSMAG00000001932	snd1	92	79.594	ENSXETG00000023043	snd1	100	79.452	Xenopus_tropicalis
ENSSMAG00000001932	snd1	87	92.162	ENSXCOG00000013629	snd1	99	92.162	Xiphophorus_couchianus
ENSSMAG00000001932	snd1	95	94.951	ENSXMAG00000011469	snd1	100	94.951	Xiphophorus_maculatus