EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000002412 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 4543 bases
Position: chr7:11822671-11827213
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000003879	RRM_1	PF00076.22	3e-25	1	1
ENSSMAP00000003885	RRM_1	PF00076.22	3e-25	1	1
ENSSMAP00000003911	RRM_1	PF00076.22	3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000003944	-	828	-	ENSSMAP00000003879	195 (aa)	-	-
ENSSMAT00000003975	-	784	-	ENSSMAP00000003911	198 (aa)	-	A0A2U9BJF7
ENSSMAT00000003949	-	1590	-	ENSSMAP00000003885	196 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000002412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000002412's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000002412	cirbpa	100	60.101	ENSAOCG00000016212	cirbpa	100	68.182	Amphiprion_ocellaris
ENSSMAG00000002412	cirbpa	100	68.528	ENSATEG00000014985	cirbpa	100	70.408	Anabas_testudineus
ENSSMAG00000002412	cirbpa	100	63.131	ENSACLG00000002094	-	100	69.543	Astatotilapia_calliptera
ENSSMAG00000002412	cirbpa	100	63.636	ENSCSEG00000014344	cirbpa	100	68.687	Cynoglossus_semilaevis
ENSSMAG00000002412	cirbpa	100	70.918	ENSCVAG00000004853	cirbpa	100	69.697	Cyprinodon_variegatus
ENSSMAG00000002412	cirbpa	100	64.615	ENSFHEG00000002580	cirbpa	100	68.020	Fundulus_heteroclitus
ENSSMAG00000002412	cirbpa	99	52.941	ENSGMOG00000007179	cirbpb	98	46.919	Gadus_morhua
ENSSMAG00000002412	cirbpa	100	70.202	ENSGAFG00000008654	cirbpa	100	69.192	Gambusia_affinis
ENSSMAG00000002412	cirbpa	100	65.152	ENSGACG00000015206	cirbpa	100	67.337	Gasterosteus_aculeatus
ENSSMAG00000002412	cirbpa	100	63.131	ENSHBUG00000022060	cirbpa	100	70.000	Haplochromis_burtoni
ENSSMAG00000002412	cirbpa	100	56.863	ENSIPUG00000000698	cirbpb	100	53.670	Ictalurus_punctatus
ENSSMAG00000002412	cirbpa	100	68.844	ENSKMAG00000005905	cirbpa	100	68.342	Kryptolebias_marmoratus
ENSSMAG00000002412	cirbpa	59	69.828	ENSLBEG00000027731	-	80	71.717	Labrus_bergylta
ENSSMAG00000002412	cirbpa	100	62.626	ENSLBEG00000000292	cirbpa	100	63.131	Labrus_bergylta
ENSSMAG00000002412	cirbpa	100	66.667	ENSMAMG00000010168	cirbpa	100	71.717	Mastacembelus_armatus
ENSSMAG00000002412	cirbpa	99	62.944	ENSMZEG00005025577	-	100	70.000	Maylandia_zebra
ENSSMAG00000002412	cirbpa	100	62.245	ENSMALG00000020092	cirbpa	100	69.898	Monopterus_albus
ENSSMAG00000002412	cirbpa	99	62.944	ENSNBRG00000019658	cirbpa	100	70.000	Neolamprologus_brichardi
ENSSMAG00000002412	cirbpa	100	61.194	ENSONIG00000010169	cirbpa	100	65.500	Oreochromis_niloticus
ENSSMAG00000002412	cirbpa	100	67.172	ENSORLG00000015433	cirbpa	100	66.162	Oryzias_latipes
ENSSMAG00000002412	cirbpa	100	67.172	ENSORLG00020016909	cirbpa	100	66.162	Oryzias_latipes_hni
ENSSMAG00000002412	cirbpa	100	67.172	ENSORLG00015016636	cirbpa	100	66.162	Oryzias_latipes_hsok
ENSSMAG00000002412	cirbpa	100	66.162	ENSOMEG00000021469	cirbpa	73	66.162	Oryzias_melastigma
ENSSMAG00000002412	cirbpa	99	58.673	ENSPMGG00000017342	cirbpa	95	64.322	Periophthalmus_magnuspinnatus
ENSSMAG00000002412	cirbpa	100	71.859	ENSPFOG00000015653	cirbpa	100	72.362	Poecilia_formosa
ENSSMAG00000002412	cirbpa	100	71.282	ENSPLAG00000011125	cirbpa	100	72.589	Poecilia_latipinna
ENSSMAG00000002412	cirbpa	100	72.222	ENSPMEG00000013878	cirbpa	100	72.727	Poecilia_mexicana
ENSSMAG00000002412	cirbpa	99	71.134	ENSPREG00000018042	cirbpa	98	71.066	Poecilia_reticulata
ENSSMAG00000002412	cirbpa	99	62.944	ENSPNYG00000007198	-	100	70.000	Pundamilia_nyererei
ENSSMAG00000002412	cirbpa	100	51.442	ENSPNAG00000019997	cirbpb	100	57.073	Pygocentrus_nattereri
ENSSMAG00000002412	cirbpa	100	57.000	ENSSFOG00015005346	cirbpb	100	57.789	Scleropages_formosus
ENSSMAG00000002412	cirbpa	100	50.739	ENSSDUG00000016099	cirbpa	100	56.566	Seriola_dumerili
ENSSMAG00000002412	cirbpa	99	61.538	ENSSPAG00000023037	cirbpa	99	53.555	Stegastes_partitus
ENSSMAG00000002412	cirbpa	100	58.586	ENSTRUG00000010187	cirbpa	100	62.000	Takifugu_rubripes
ENSSMAG00000002412	cirbpa	100	57.071	ENSTNIG00000000450	cirbpa	100	65.152	Tetraodon_nigroviridis
ENSSMAG00000002412	cirbpa	99	71.134	ENSXCOG00000008262	cirbpa	92	84.932	Xiphophorus_couchianus
ENSSMAG00000002412	cirbpa	100	71.717	ENSXMAG00000019336	cirbpa	100	71.212	Xiphophorus_maculatus