EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000002441 (Gene tree)
Gene ID: -
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 4614 bases
Position: chr17:516499-521112
Accession: ZDB-GENE-040426-818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000004003	SRP54	PF00448.22	1.8e-77	1	1
ENSSMAP00000004003	SRP54_N	PF02881.19	1.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000004067	-	1802	-	ENSSMAP00000004003	534 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000002441's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000002441's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000002441	srp54	100	89.888	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSSMAG00000002441	srp54	100	93.446	ENSAPOG00000011314	srp54	100	93.446	Acanthochromis_polyacanthus
ENSSMAG00000002441	srp54	100	89.888	ENSAMEG00000015544	SRP54	100	89.888	Ailuropoda_melanoleuca
ENSSMAG00000002441	srp54	84	97.550	ENSACIG00000022831	srp54	97	97.550	Amphilophus_citrinellus
ENSSMAG00000002441	srp54	100	93.446	ENSAOCG00000019401	srp54	100	93.446	Amphiprion_ocellaris
ENSSMAG00000002441	srp54	100	93.446	ENSAPEG00000001977	srp54	100	93.446	Amphiprion_percula
ENSSMAG00000002441	srp54	100	93.258	ENSATEG00000013877	srp54	100	93.258	Anabas_testudineus
ENSSMAG00000002441	srp54	89	94.515	ENSAPLG00000010125	SRP54	95	94.515	Anas_platyrhynchos
ENSSMAG00000002441	srp54	67	72.576	ENSACAG00000001124	-	100	72.576	Anolis_carolinensis
ENSSMAG00000002441	srp54	100	89.326	ENSACAG00000002103	-	100	89.326	Anolis_carolinensis
ENSSMAG00000002441	srp54	87	85.991	ENSACAG00000010631	-	100	85.991	Anolis_carolinensis
ENSSMAG00000002441	srp54	100	89.888	ENSANAG00000022133	SRP54	100	89.888	Aotus_nancymaae
ENSSMAG00000002441	srp54	100	93.446	ENSACLG00000015866	srp54	100	93.446	Astatotilapia_calliptera
ENSSMAG00000002441	srp54	100	91.760	ENSAMXG00000032669	SRP54	100	91.760	Astyanax_mexicanus
ENSSMAG00000002441	srp54	100	89.888	ENSBTAG00000019085	SRP54	100	89.888	Bos_taurus
ENSSMAG00000002441	srp54	98	68.750	WBGene00009012	F21D5.7	100	68.750	Caenorhabditis_elegans
ENSSMAG00000002441	srp54	100	89.888	ENSCJAG00000006581	SRP54	100	89.888	Callithrix_jacchus
ENSSMAG00000002441	srp54	100	89.888	ENSCAFG00000013331	SRP54	100	89.888	Canis_familiaris
ENSSMAG00000002441	srp54	100	89.888	ENSCAFG00020023427	SRP54	100	89.888	Canis_lupus_dingo
ENSSMAG00000002441	srp54	100	89.888	ENSCHIG00000026345	SRP54	100	89.888	Capra_hircus
ENSSMAG00000002441	srp54	100	89.700	ENSTSYG00000002680	-	100	89.700	Carlito_syrichta
ENSSMAG00000002441	srp54	89	83.579	ENSTSYG00000035333	-	93	83.579	Carlito_syrichta
ENSSMAG00000002441	srp54	89	61.020	ENSCAPG00000008780	SRP54	100	61.020	Cavia_aperea
ENSSMAG00000002441	srp54	100	89.513	ENSCPOG00000003691	SRP54	100	89.513	Cavia_porcellus
ENSSMAG00000002441	srp54	90	88.667	ENSCCAG00000024179	SRP54	100	88.864	Cebus_capucinus
ENSSMAG00000002441	srp54	100	89.888	ENSCATG00000034083	SRP54	100	89.888	Cercocebus_atys
ENSSMAG00000002441	srp54	100	89.888	ENSCLAG00000015076	SRP54	100	89.888	Chinchilla_lanigera
ENSSMAG00000002441	srp54	100	89.888	ENSCSAG00000015575	SRP54	100	89.888	Chlorocebus_sabaeus
ENSSMAG00000002441	srp54	89	84.000	ENSCHOG00000008986	SRP54	99	84.000	Choloepus_hoffmanni
ENSSMAG00000002441	srp54	100	89.888	ENSCPBG00000026195	SRP54	100	89.888	Chrysemys_picta_bellii
ENSSMAG00000002441	srp54	100	77.903	ENSCING00000007380	-	100	77.903	Ciona_intestinalis
ENSSMAG00000002441	srp54	100	89.888	ENSCANG00000028532	SRP54	100	89.888	Colobus_angolensis_palliatus
ENSSMAG00000002441	srp54	100	89.888	ENSCGRG00001009525	-	100	89.888	Cricetulus_griseus_chok1gshd
ENSSMAG00000002441	srp54	72	95.325	ENSCGRG00000009453	-	89	95.325	Cricetulus_griseus_crigri
ENSSMAG00000002441	srp54	100	93.071	ENSCSEG00000012392	srp54	100	93.071	Cynoglossus_semilaevis
ENSSMAG00000002441	srp54	100	93.071	ENSCVAG00000010395	srp54	100	93.071	Cyprinodon_variegatus
ENSSMAG00000002441	srp54	100	92.509	ENSDARG00000098367	srp54	100	92.509	Danio_rerio
ENSSMAG00000002441	srp54	100	89.888	ENSDNOG00000032525	SRP54	100	89.888	Dasypus_novemcinctus
ENSSMAG00000002441	srp54	84	80.088	ENSDORG00000005159	-	98	80.088	Dipodomys_ordii
ENSSMAG00000002441	srp54	89	79.368	FBgn0010747	Srp54k	98	74.053	Drosophila_melanogaster
ENSSMAG00000002441	srp54	84	52.009	ENSETEG00000012102	-	99	52.009	Echinops_telfairi
ENSSMAG00000002441	srp54	100	88.764	ENSETEG00000016307	-	100	88.764	Echinops_telfairi
ENSSMAG00000002441	srp54	100	83.146	ENSEBUG00000009437	-	100	83.146	Eptatretus_burgeri
ENSSMAG00000002441	srp54	100	89.888	ENSEASG00005002057	SRP54	100	89.888	Equus_asinus_asinus
ENSSMAG00000002441	srp54	99	89.583	ENSECAG00000018042	SRP54	98	89.583	Equus_caballus
ENSSMAG00000002441	srp54	100	75.281	ENSEEUG00000001511	SRP54	100	75.281	Erinaceus_europaeus
ENSSMAG00000002441	srp54	100	91.760	ENSELUG00000003395	srp54	100	91.760	Esox_lucius
ENSSMAG00000002441	srp54	100	89.700	ENSFCAG00000032033	SRP54	100	89.700	Felis_catus
ENSSMAG00000002441	srp54	100	89.513	ENSFALG00000005995	SRP54	100	89.513	Ficedula_albicollis
ENSSMAG00000002441	srp54	100	89.888	ENSFDAG00000016767	SRP54	100	89.888	Fukomys_damarensis
ENSSMAG00000002441	srp54	100	93.446	ENSFHEG00000004263	srp54	100	93.446	Fundulus_heteroclitus
ENSSMAG00000002441	srp54	95	86.417	ENSGMOG00000011391	srp54	100	86.417	Gadus_morhua
ENSSMAG00000002441	srp54	100	89.513	ENSGALG00000023135	SRP54	100	89.513	Gallus_gallus
ENSSMAG00000002441	srp54	100	93.258	ENSGAFG00000011586	srp54	100	93.258	Gambusia_affinis
ENSSMAG00000002441	srp54	100	93.071	ENSGACG00000004181	srp54	100	98.387	Gasterosteus_aculeatus
ENSSMAG00000002441	srp54	100	89.888	ENSGAGG00000014766	SRP54	100	89.888	Gopherus_agassizii
ENSSMAG00000002441	srp54	100	89.888	ENSGGOG00000002926	SRP54	100	89.888	Gorilla_gorilla
ENSSMAG00000002441	srp54	100	93.446	ENSHBUG00000005678	srp54	100	93.446	Haplochromis_burtoni
ENSSMAG00000002441	srp54	100	89.888	ENSHGLG00000002850	SRP54	100	89.888	Heterocephalus_glaber_female
ENSSMAG00000002441	srp54	100	89.888	ENSHGLG00100005263	SRP54	100	89.888	Heterocephalus_glaber_male
ENSSMAG00000002441	srp54	100	62.804	ENSHGLG00100007281	-	100	62.804	Heterocephalus_glaber_male
ENSSMAG00000002441	srp54	100	91.760	ENSHCOG00000021127	srp54	100	91.760	Hippocampus_comes
ENSSMAG00000002441	srp54	100	91.760	ENSIPUG00000001420	srp54	100	91.760	Ictalurus_punctatus
ENSSMAG00000002441	srp54	100	89.888	ENSSTOG00000016023	SRP54	100	89.888	Ictidomys_tridecemlineatus
ENSSMAG00000002441	srp54	88	69.149	ENSJJAG00000016404	-	100	69.149	Jaculus_jaculus
ENSSMAG00000002441	srp54	100	85.393	ENSJJAG00000013417	-	100	85.393	Jaculus_jaculus
ENSSMAG00000002441	srp54	100	92.884	ENSKMAG00000007707	srp54	100	92.884	Kryptolebias_marmoratus
ENSSMAG00000002441	srp54	100	93.633	ENSLBEG00000018690	srp54	100	93.633	Labrus_bergylta
ENSSMAG00000002441	srp54	100	93.633	ENSLBEG00000021122	srp54	100	93.633	Labrus_bergylta
ENSSMAG00000002441	srp54	100	90.262	ENSLACG00000017890	SRP54	100	90.262	Latimeria_chalumnae
ENSSMAG00000002441	srp54	100	91.760	ENSLOCG00000009440	srp54	100	91.760	Lepisosteus_oculatus
ENSSMAG00000002441	srp54	100	89.888	ENSLAFG00000012007	SRP54	100	89.888	Loxodonta_africana
ENSSMAG00000002441	srp54	100	89.888	ENSMFAG00000044371	SRP54	100	89.888	Macaca_fascicularis
ENSSMAG00000002441	srp54	100	89.888	ENSMMUG00000015073	FAM177A1	100	89.888	Macaca_mulatta
ENSSMAG00000002441	srp54	100	89.888	ENSMNEG00000006947	SRP54	100	89.888	Macaca_nemestrina
ENSSMAG00000002441	srp54	100	89.888	ENSMLEG00000042251	SRP54	100	89.888	Mandrillus_leucophaeus
ENSSMAG00000002441	srp54	100	93.446	ENSMAMG00000004803	srp54	100	93.446	Mastacembelus_armatus
ENSSMAG00000002441	srp54	100	93.446	ENSMZEG00005027528	srp54	100	93.446	Maylandia_zebra
ENSSMAG00000002441	srp54	100	85.448	ENSMGAG00000012481	SRP54	100	85.448	Meleagris_gallopavo
ENSSMAG00000002441	srp54	100	90.075	ENSMAUG00000014447	-	100	90.075	Mesocricetus_auratus
ENSSMAG00000002441	srp54	100	89.888	ENSMICG00000010270	SRP54	100	89.888	Microcebus_murinus
ENSSMAG00000002441	srp54	88	89.362	ENSMOCG00000000948	-	100	89.362	Microtus_ochrogaster
ENSSMAG00000002441	srp54	85	96.256	ENSMMOG00000020303	srp54	99	96.256	Mola_mola
ENSSMAG00000002441	srp54	100	89.888	ENSMODG00000023150	-	100	89.888	Monodelphis_domestica
ENSSMAG00000002441	srp54	100	89.888	ENSMODG00000012925	-	100	89.888	Monodelphis_domestica
ENSSMAG00000002441	srp54	83	98.646	ENSMALG00000009163	srp54	98	98.646	Monopterus_albus
ENSSMAG00000002441	srp54	100	90.075	MGP_CAROLIEiJ_G0017754	-	100	90.075	Mus_caroli
ENSSMAG00000002441	srp54	100	90.075	ENSMUSG00000073079	Srp54a	100	95.455	Mus_musculus
ENSSMAG00000002441	srp54	100	89.326	ENSMUSG00000079108	Srp54c	100	89.326	Mus_musculus
ENSSMAG00000002441	srp54	100	90.075	ENSMUSG00000112449	Srp54b	100	90.075	Mus_musculus
ENSSMAG00000002441	srp54	100	90.075	MGP_PahariEiJ_G0029510	-	100	90.075	Mus_pahari
ENSSMAG00000002441	srp54	100	89.888	ENSMPUG00000016302	SRP54	100	89.888	Mustela_putorius_furo
ENSSMAG00000002441	srp54	100	89.326	ENSMLUG00000008958	SRP54	100	89.326	Myotis_lucifugus
ENSSMAG00000002441	srp54	100	81.273	ENSNGAG00000019806	-	100	81.273	Nannospalax_galili
ENSSMAG00000002441	srp54	88	92.979	ENSNBRG00000006000	srp54	100	92.979	Neolamprologus_brichardi
ENSSMAG00000002441	srp54	100	89.888	ENSNLEG00000003496	SRP54	100	89.888	Nomascus_leucogenys
ENSSMAG00000002441	srp54	63	96.429	ENSMEUG00000000138	-	76	96.429	Notamacropus_eugenii
ENSSMAG00000002441	srp54	60	88.889	ENSOPRG00000014502	-	60	88.889	Ochotona_princeps
ENSSMAG00000002441	srp54	100	89.888	ENSODEG00000004865	SRP54	100	89.888	Octodon_degus
ENSSMAG00000002441	srp54	100	93.446	ENSONIG00000011768	srp54	100	93.446	Oreochromis_niloticus
ENSSMAG00000002441	srp54	100	89.888	ENSOANG00000014051	SRP54	100	89.888	Ornithorhynchus_anatinus
ENSSMAG00000002441	srp54	100	89.326	ENSOCUG00000007838	SRP54	100	89.326	Oryctolagus_cuniculus
ENSSMAG00000002441	srp54	100	93.633	ENSORLG00000010027	srp54	100	93.633	Oryzias_latipes
ENSSMAG00000002441	srp54	100	93.633	ENSORLG00020001878	srp54	100	93.633	Oryzias_latipes_hni
ENSSMAG00000002441	srp54	100	93.633	ENSORLG00015021866	srp54	100	93.633	Oryzias_latipes_hsok
ENSSMAG00000002441	srp54	100	93.446	ENSOMEG00000020952	srp54	100	93.446	Oryzias_melastigma
ENSSMAG00000002441	srp54	100	89.888	ENSOGAG00000012188	SRP54	100	89.888	Otolemur_garnettii
ENSSMAG00000002441	srp54	100	89.888	ENSOARG00000007160	SRP54	100	89.888	Ovis_aries
ENSSMAG00000002441	srp54	100	89.888	ENSPPAG00000017434	SRP54	100	89.888	Pan_paniscus
ENSSMAG00000002441	srp54	100	88.951	ENSPPRG00000014047	SRP54	100	88.951	Panthera_pardus
ENSSMAG00000002441	srp54	100	89.700	ENSPTIG00000000744	SRP54	96	89.700	Panthera_tigris_altaica
ENSSMAG00000002441	srp54	100	89.888	ENSPTRG00000006259	FAM177A1	100	89.888	Pan_troglodytes
ENSSMAG00000002441	srp54	100	89.888	ENSPANG00000023853	SRP54	100	89.888	Papio_anubis
ENSSMAG00000002441	srp54	100	91.948	ENSPKIG00000001953	srp54	100	91.948	Paramormyrops_kingsleyae
ENSSMAG00000002441	srp54	100	89.700	ENSPSIG00000006476	SRP54	100	89.700	Pelodiscus_sinensis
ENSSMAG00000002441	srp54	86	95.435	ENSPMGG00000004127	srp54	99	95.435	Periophthalmus_magnuspinnatus
ENSSMAG00000002441	srp54	89	100.000	ENSPEMG00000019634	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSSMAG00000002441	srp54	100	84.644	ENSPMAG00000006078	-	100	84.644	Petromyzon_marinus
ENSSMAG00000002441	srp54	100	89.888	ENSPCIG00000016175	SRP54	100	89.888	Phascolarctos_cinereus
ENSSMAG00000002441	srp54	100	93.258	ENSPFOG00000008870	srp54	100	93.258	Poecilia_formosa
ENSSMAG00000002441	srp54	100	93.258	ENSPLAG00000009889	srp54	100	93.258	Poecilia_latipinna
ENSSMAG00000002441	srp54	100	93.258	ENSPMEG00000008601	srp54	100	93.258	Poecilia_mexicana
ENSSMAG00000002441	srp54	100	93.258	ENSPREG00000004505	srp54	100	93.258	Poecilia_reticulata
ENSSMAG00000002441	srp54	100	85.393	ENSPPYG00000005739	SRP54	100	85.393	Pongo_abelii
ENSSMAG00000002441	srp54	100	86.517	ENSPCAG00000006268	SRP54	100	86.517	Procavia_capensis
ENSSMAG00000002441	srp54	100	88.037	ENSPCOG00000022473	SRP54	100	88.037	Propithecus_coquereli
ENSSMAG00000002441	srp54	59	95.745	ENSPVAG00000010056	SRP54	82	95.745	Pteropus_vampyrus
ENSSMAG00000002441	srp54	100	93.446	ENSPNYG00000009717	srp54	100	93.446	Pundamilia_nyererei
ENSSMAG00000002441	srp54	100	91.948	ENSPNAG00000008544	srp54	100	91.948	Pygocentrus_nattereri
ENSSMAG00000002441	srp54	100	89.888	ENSRNOG00000032776	Srp54a	100	89.888	Rattus_norvegicus
ENSSMAG00000002441	srp54	100	89.888	ENSRROG00000041292	SRP54	100	89.888	Rhinopithecus_roxellana
ENSSMAG00000002441	srp54	81	51.474	YPR088C	SRP54	81	51.474	Saccharomyces_cerevisiae
ENSSMAG00000002441	srp54	94	89.286	ENSSBOG00000035145	SRP54	100	89.286	Saimiri_boliviensis_boliviensis
ENSSMAG00000002441	srp54	70	86.863	ENSSHAG00000000671	SRP54	100	86.863	Sarcophilus_harrisii
ENSSMAG00000002441	srp54	100	92.322	ENSSFOG00015013920	srp54	100	92.322	Scleropages_formosus
ENSSMAG00000002441	srp54	100	93.258	ENSSDUG00000018586	srp54	100	93.258	Seriola_dumerili
ENSSMAG00000002441	srp54	100	93.446	ENSSLDG00000010476	srp54	100	93.446	Seriola_lalandi_dorsalis
ENSSMAG00000002441	srp54	100	89.888	ENSSARG00000002744	SRP54	100	89.888	Sorex_araneus
ENSSMAG00000002441	srp54	100	89.888	ENSSPUG00000013101	SRP54	100	89.888	Sphenodon_punctatus
ENSSMAG00000002441	srp54	100	93.446	ENSSPAG00000002354	srp54	100	93.446	Stegastes_partitus
ENSSMAG00000002441	srp54	100	89.888	ENSSSCG00000001955	SRP54	100	89.888	Sus_scrofa
ENSSMAG00000002441	srp54	89	94.515	ENSTGUG00000011945	-	95	94.515	Taeniopygia_guttata
ENSSMAG00000002441	srp54	100	92.884	ENSTRUG00000007057	srp54	100	92.884	Takifugu_rubripes
ENSSMAG00000002441	srp54	100	92.322	ENSTNIG00000002589	srp54	100	92.322	Tetraodon_nigroviridis
ENSSMAG00000002441	srp54	89	81.342	ENSTBEG00000011409	SRP54	100	81.342	Tupaia_belangeri
ENSSMAG00000002441	srp54	100	81.273	ENSTTRG00000000928	SRP54	100	81.273	Tursiops_truncatus
ENSSMAG00000002441	srp54	100	89.888	ENSUMAG00000011234	SRP54	100	89.888	Ursus_maritimus
ENSSMAG00000002441	srp54	89	94.726	ENSVPAG00000005668	SRP54	100	94.726	Vicugna_pacos
ENSSMAG00000002441	srp54	100	89.888	ENSVVUG00000019962	SRP54	100	89.888	Vulpes_vulpes
ENSSMAG00000002441	srp54	100	76.164	ENSXETG00000012290	srp54	100	76.199	Xenopus_tropicalis
ENSSMAG00000002441	srp54	83	98.646	ENSXCOG00000004658	srp54	96	98.646	Xiphophorus_couchianus
ENSSMAG00000002441	srp54	100	93.258	ENSXMAG00000018315	srp54	100	93.258	Xiphophorus_maculatus