EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000003589 (Gene tree)
Gene ID: -
Gene Symbol: rack1
Alias: gnb2l1|rack1|wu:fb80d08|wu:fk65d12
Full Name: receptor for activated C kinase 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 12459 bases
Position: chr13:13578215-13590673
Accession: ZDB-GENE-990415-89
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000005886	eIF2A	PF08662.11	4.1e-07	1	1
ENSSMAP00000005926	eIF2A	PF08662.11	1.5e-06	1	1
ENSSMAP00000005957	eIF2A	PF08662.11	1.5e-06	1	1
ENSSMAP00000006005	eIF2A	PF08662.11	1.5e-06	1	1
ENSSMAP00000005842	eIF2A	PF08662.11	4.2e-06	1	1
ENSSMAP00000005868	eIF2A	PF08662.11	4.2e-06	1	1
ENSSMAP00000006067	eIF2A	PF08662.11	4.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000005920	-	4609	-	ENSSMAP00000005842	324 (aa)	-	-
ENSSMAT00000005946	-	4609	-	ENSSMAP00000005868	324 (aa)	-	-
ENSSMAT00000005989	-	1107	-	ENSSMAP00000005911	312 (aa)	-	-
ENSSMAT00000006004	-	1604	-	ENSSMAP00000005926	317 (aa)	-	-
ENSSMAT00000005964	-	1166	-	ENSSMAP00000005886	324 (aa)	-	-
ENSSMAT00000006060	-	1568	-	ENSSMAP00000005982	305 (aa)	-	-
ENSSMAT00000006083	-	3359	-	ENSSMAP00000006005	317 (aa)	-	-
ENSSMAT00000006145	-	1135	-	ENSSMAP00000006067	324 (aa)	-	-
ENSSMAT00000006036	-	1604	-	ENSSMAP00000005957	317 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000003589's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000003589's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000003589	rack1	98	30.389	ENSSMAG00000015719	wdr5	95	30.389
ENSSMAG00000003589	rack1	96	30.634	ENSSMAG00000013505	POC1A	72	31.674
ENSSMAG00000003589	rack1	96	30.952	ENSSMAG00000008889	prpf4	57	30.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000003589	rack1	96	81.865	ENSTSYG00000033831	-	100	66.246	Carlito_syrichta
ENSSMAG00000003589	rack1	100	97.792	ENSMAMG00000007841	rack1	100	97.792	Mastacembelus_armatus
ENSSMAG00000003589	rack1	100	97.476	ENSPFOG00000008165	rack1	98	97.476	Poecilia_formosa
ENSSMAG00000003589	rack1	100	97.476	ENSPMEG00000019993	rack1	100	97.476	Poecilia_mexicana
ENSSMAG00000003589	rack1	100	97.476	ENSPREG00000004039	rack1	100	97.476	Poecilia_reticulata
ENSSMAG00000003589	rack1	100	94.953	ENSPNAG00000000469	rack1	100	94.953	Pygocentrus_nattereri
ENSSMAG00000003589	rack1	100	94.006	ENSTRUG00000000550	rack1	100	94.006	Takifugu_rubripes