EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000003738 (Gene tree)
Gene ID: -
Gene Symbol: scaf4b
Alias: im:6900467|si:ch211-245g11.2
Full Name: SR-related CTD-associated factor 4b
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 21373 bases
Position: chr3:7653319-7674691
Accession: ZDB-GENE-050506-42
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000006093	RRM_1	PF00076.22	6.3e-06	1	1
ENSSMAP00000006119	RRM_1	PF00076.22	6.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000006198	-	3341	-	ENSSMAP00000006119	762 (aa)	-	-
ENSSMAT00000006171	-	3545	-	ENSSMAP00000006093	675 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000003738's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000003738's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000003738	scaf4b	54	71.519	ENSG00000156304	SCAF4	65	58.423	Homo_sapiens
ENSSMAG00000003738	scaf4b	81	50.651	ENSAPOG00000002946	scaf4a	80	44.284	Acanthochromis_polyacanthus
ENSSMAG00000003738	scaf4b	100	77.326	ENSAPOG00000019615	scaf4b	100	77.647	Acanthochromis_polyacanthus
ENSSMAG00000003738	scaf4b	100	78.899	ENSAOCG00000010433	scaf4b	100	79.423	Amphiprion_ocellaris
ENSSMAG00000003738	scaf4b	81	48.991	ENSAOCG00000000615	scaf4a	79	44.173	Amphiprion_ocellaris
ENSSMAG00000003738	scaf4b	100	78.506	ENSAPEG00000010913	scaf4b	100	79.030	Amphiprion_percula
ENSSMAG00000003738	scaf4b	81	48.847	ENSAPEG00000021229	scaf4a	80	44.062	Amphiprion_percula
ENSSMAG00000003738	scaf4b	98	77.733	ENSATEG00000011758	scaf4b	100	78.400	Anabas_testudineus
ENSSMAG00000003738	scaf4b	61	71.023	ENSAPLG00000002509	SCAF4	74	52.108	Anas_platyrhynchos
ENSSMAG00000003738	scaf4b	54	71.519	ENSANAG00000037494	SCAF4	65	57.042	Aotus_nancymaae
ENSSMAG00000003738	scaf4b	100	74.016	ENSACLG00000024833	scaf4b	100	74.147	Astatotilapia_calliptera
ENSSMAG00000003738	scaf4b	51	45.707	ENSAMXG00000008585	scaf4a	82	49.076	Astyanax_mexicanus
ENSSMAG00000003738	scaf4b	54	72.152	ENSBTAG00000018855	SCAF4	66	59.636	Bos_taurus
ENSSMAG00000003738	scaf4b	54	71.519	ENSCJAG00000008993	SCAF4	66	57.092	Callithrix_jacchus
ENSSMAG00000003738	scaf4b	53	72.152	ENSCAFG00000008863	SCAF4	66	59.551	Canis_familiaris
ENSSMAG00000003738	scaf4b	52	72.152	ENSCAFG00020026019	SCAF4	69	59.551	Canis_lupus_dingo
ENSSMAG00000003738	scaf4b	54	72.152	ENSCHIG00000008385	SCAF4	65	58.273	Capra_hircus
ENSSMAG00000003738	scaf4b	52	71.519	ENSTSYG00000011344	SCAF4	65	59.245	Carlito_syrichta
ENSSMAG00000003738	scaf4b	72	44.308	ENSCPOG00000030311	-	54	40.480	Cavia_porcellus
ENSSMAG00000003738	scaf4b	54	71.429	ENSCPOG00000012443	SCAF4	66	57.993	Cavia_porcellus
ENSSMAG00000003738	scaf4b	54	71.519	ENSCCAG00000033727	SCAF4	67	56.569	Cebus_capucinus
ENSSMAG00000003738	scaf4b	54	71.519	ENSCATG00000030379	SCAF4	65	56.690	Cercocebus_atys
ENSSMAG00000003738	scaf4b	52	72.050	ENSCLAG00000006298	SCAF4	64	58.621	Chinchilla_lanigera
ENSSMAG00000003738	scaf4b	54	71.519	ENSCSAG00000009438	SCAF4	65	57.042	Chlorocebus_sabaeus
ENSSMAG00000003738	scaf4b	54	71.519	ENSCANG00000029847	SCAF4	66	58.065	Colobus_angolensis_palliatus
ENSSMAG00000003738	scaf4b	51	79.137	ENSCGRG00001020821	Scaf4	61	58.621	Cricetulus_griseus_chok1gshd
ENSSMAG00000003738	scaf4b	50	79.137	ENSCGRG00000014360	Scaf4	61	58.594	Cricetulus_griseus_crigri
ENSSMAG00000003738	scaf4b	100	66.797	ENSCSEG00000012808	-	99	66.797	Cynoglossus_semilaevis
ENSSMAG00000003738	scaf4b	64	55.462	ENSCSEG00000019549	scaf4a	78	47.734	Cynoglossus_semilaevis
ENSSMAG00000003738	scaf4b	100	68.235	ENSCVAG00000009142	scaf4b	100	68.235	Cyprinodon_variegatus
ENSSMAG00000003738	scaf4b	99	45.276	ENSDARG00000077093	scaf4a	79	47.541	Danio_rerio
ENSSMAG00000003738	scaf4b	53	68.627	ENSDARG00000018854	scaf4b	62	66.129	Danio_rerio
ENSSMAG00000003738	scaf4b	54	71.519	ENSDNOG00000019014	SCAF4	62	48.014	Dasypus_novemcinctus
ENSSMAG00000003738	scaf4b	67	50.694	ENSEBUG00000003891	SCAF8	60	50.758	Eptatretus_burgeri
ENSSMAG00000003738	scaf4b	54	72.152	ENSEASG00005007756	SCAF4	66	60.000	Equus_asinus_asinus
ENSSMAG00000003738	scaf4b	54	72.152	ENSECAG00000014248	SCAF4	66	60.000	Equus_caballus
ENSSMAG00000003738	scaf4b	53	62.564	ENSELUG00000002779	SCAF8	98	43.314	Esox_lucius
ENSSMAG00000003738	scaf4b	54	72.152	ENSFCAG00000002228	SCAF4	66	59.636	Felis_catus
ENSSMAG00000003738	scaf4b	52	71.429	ENSFDAG00000017780	SCAF4	63	59.363	Fukomys_damarensis
ENSSMAG00000003738	scaf4b	76	39.130	ENSFHEG00000017866	scaf4a	56	51.275	Fundulus_heteroclitus
ENSSMAG00000003738	scaf4b	100	69.634	ENSFHEG00000007634	scaf4b	100	69.895	Fundulus_heteroclitus
ENSSMAG00000003738	scaf4b	63	69.512	ENSGMOG00000015188	scaf4a	62	54.264	Gadus_morhua
ENSSMAG00000003738	scaf4b	65	61.321	ENSGALG00000033965	SCAF4	72	60.148	Gallus_gallus
ENSSMAG00000003738	scaf4b	81	48.286	ENSGAFG00000019460	scaf4a	77	49.501	Gambusia_affinis
ENSSMAG00000003738	scaf4b	52	69.930	ENSGACG00000020580	scaf4a	63	59.245	Gasterosteus_aculeatus
ENSSMAG00000003738	scaf4b	54	71.519	ENSGGOG00000015557	SCAF4	60	58.423	Gorilla_gorilla
ENSSMAG00000003738	scaf4b	59	64.615	ENSHBUG00000019537	SCAF8	55	43.158	Haplochromis_burtoni
ENSSMAG00000003738	scaf4b	54	71.429	ENSHGLG00000010582	SCAF4	65	59.273	Heterocephalus_glaber_female
ENSSMAG00000003738	scaf4b	52	71.429	ENSHGLG00100009441	SCAF4	65	58.621	Heterocephalus_glaber_male
ENSSMAG00000003738	scaf4b	52	72.785	ENSSTOG00000004450	SCAF4	63	46.091	Ictidomys_tridecemlineatus
ENSSMAG00000003738	scaf4b	52	73.418	ENSJJAG00000019447	Scaf4	66	54.717	Jaculus_jaculus
ENSSMAG00000003738	scaf4b	100	71.765	ENSKMAG00000005742	scaf4b	100	72.549	Kryptolebias_marmoratus
ENSSMAG00000003738	scaf4b	53	61.635	ENSLBEG00000012484	-	50	41.151	Labrus_bergylta
ENSSMAG00000003738	scaf4b	95	42.232	ENSLBEG00000014675	scaf4a	79	42.357	Labrus_bergylta
ENSSMAG00000003738	scaf4b	74	55.061	ENSLACG00000013913	SCAF4	67	56.275	Latimeria_chalumnae
ENSSMAG00000003738	scaf4b	99	47.026	ENSLOCG00000009162	scaf4a	85	49.229	Lepisosteus_oculatus
ENSSMAG00000003738	scaf4b	58	71.698	ENSLAFG00000010710	SCAF4	72	54.259	Loxodonta_africana
ENSSMAG00000003738	scaf4b	54	71.519	ENSMFAG00000037668	SCAF4	65	56.690	Macaca_fascicularis
ENSSMAG00000003738	scaf4b	54	71.519	ENSMMUG00000001712	SCAF4	65	56.690	Macaca_mulatta
ENSSMAG00000003738	scaf4b	54	71.519	ENSMNEG00000032966	SCAF4	65	56.690	Macaca_nemestrina
ENSSMAG00000003738	scaf4b	52	71.519	ENSMLEG00000039674	SCAF4	65	56.204	Mandrillus_leucophaeus
ENSSMAG00000003738	scaf4b	55	71.023	ENSMGAG00000014515	SCAF4	69	59.542	Meleagris_gallopavo
ENSSMAG00000003738	scaf4b	52	72.785	ENSMAUG00000013307	Scaf4	66	57.414	Mesocricetus_auratus
ENSSMAG00000003738	scaf4b	54	71.519	ENSMICG00000005256	SCAF4	66	59.636	Microcebus_murinus
ENSSMAG00000003738	scaf4b	57	71.271	ENSMOCG00000012087	Scaf4	62	59.480	Microtus_ochrogaster
ENSSMAG00000003738	scaf4b	65	59.420	ENSMODG00000021040	SCAF4	73	54.489	Monodelphis_domestica
ENSSMAG00000003738	scaf4b	60	60.526	ENSMALG00000013825	scaf4a	73	54.355	Monopterus_albus
ENSSMAG00000003738	scaf4b	54	72.785	MGP_CAROLIEiJ_G0020944	Scaf4	61	57.621	Mus_caroli
ENSSMAG00000003738	scaf4b	54	72.785	ENSMUSG00000022983	Scaf4	61	57.621	Mus_musculus
ENSSMAG00000003738	scaf4b	54	72.785	MGP_PahariEiJ_G0016649	Scaf4	61	58.364	Mus_pahari
ENSSMAG00000003738	scaf4b	54	72.785	MGP_SPRETEiJ_G0021850	Scaf4	61	57.621	Mus_spretus
ENSSMAG00000003738	scaf4b	54	72.152	ENSMPUG00000001078	SCAF4	66	57.692	Mustela_putorius_furo
ENSSMAG00000003738	scaf4b	53	72.785	ENSNGAG00000005214	Scaf4	65	59.542	Nannospalax_galili
ENSSMAG00000003738	scaf4b	54	71.519	ENSNLEG00000003569	SCAF4	65	58.781	Nomascus_leucogenys
ENSSMAG00000003738	scaf4b	50	78.417	ENSODEG00000002718	SCAF4	63	59.608	Octodon_degus
ENSSMAG00000003738	scaf4b	63	56.522	ENSONIG00000004687	scaf4a	73	55.137	Oreochromis_niloticus
ENSSMAG00000003738	scaf4b	71	64.780	ENSONIG00000005610	scaf4b	99	64.780	Oreochromis_niloticus
ENSSMAG00000003738	scaf4b	54	71.519	ENSOCUG00000008336	SCAF4	64	58.909	Oryctolagus_cuniculus
ENSSMAG00000003738	scaf4b	100	65.269	ENSORLG00000003420	scaf4b	100	66.972	Oryzias_latipes
ENSSMAG00000003738	scaf4b	100	65.138	ENSORLG00020013853	scaf4b	100	66.841	Oryzias_latipes_hni
ENSSMAG00000003738	scaf4b	52	71.519	ENSOGAG00000014653	SCAF4	61	50.923	Otolemur_garnettii
ENSSMAG00000003738	scaf4b	52	72.152	ENSOARG00000013894	SCAF4	64	57.353	Ovis_aries
ENSSMAG00000003738	scaf4b	54	71.519	ENSPPAG00000028535	SCAF4	65	58.423	Pan_paniscus
ENSSMAG00000003738	scaf4b	52	72.152	ENSPPRG00000000635	SCAF4	65	59.245	Panthera_pardus
ENSSMAG00000003738	scaf4b	54	71.519	ENSPTRG00000013848	SCAF4	65	58.423	Pan_troglodytes
ENSSMAG00000003738	scaf4b	54	71.519	ENSPANG00000017332	SCAF4	65	56.690	Papio_anubis
ENSSMAG00000003738	scaf4b	62	58.696	ENSPKIG00000022408	scaf4a	100	52.420	Paramormyrops_kingsleyae
ENSSMAG00000003738	scaf4b	57	70.701	ENSPSIG00000014242	SCAF4	72	53.651	Pelodiscus_sinensis
ENSSMAG00000003738	scaf4b	59	57.554	ENSPMAG00000006192	SCAF8	71	58.084	Petromyzon_marinus
ENSSMAG00000003738	scaf4b	58	71.519	ENSPCIG00000028183	SCAF4	66	53.822	Phascolarctos_cinereus
ENSSMAG00000003738	scaf4b	81	70.480	ENSPFOG00000003261	scaf4b	80	70.370	Poecilia_formosa
ENSSMAG00000003738	scaf4b	81	47.639	ENSPLAG00000001972	scaf4a	84	48.847	Poecilia_latipinna
ENSSMAG00000003738	scaf4b	100	65.578	ENSPLAG00000004403	-	100	65.704	Poecilia_latipinna
ENSSMAG00000003738	scaf4b	100	65.747	ENSPMEG00000006666	-	100	65.872	Poecilia_mexicana
ENSSMAG00000003738	scaf4b	100	64.492	ENSPREG00000013510	scaf4b	100	65.245	Poecilia_reticulata
ENSSMAG00000003738	scaf4b	54	71.519	ENSPPYG00000011355	SCAF4	65	58.423	Pongo_abelii
ENSSMAG00000003738	scaf4b	55	72.222	ENSPCAG00000009998	SCAF4	51	60.073	Procavia_capensis
ENSSMAG00000003738	scaf4b	54	71.519	ENSPCOG00000018710	SCAF4	66	58.303	Propithecus_coquereli
ENSSMAG00000003738	scaf4b	54	73.418	ENSPVAG00000005220	SCAF4	66	59.928	Pteropus_vampyrus
ENSSMAG00000003738	scaf4b	100	73.885	ENSPNYG00000010526	scaf4b	100	74.016	Pundamilia_nyererei
ENSSMAG00000003738	scaf4b	100	75.177	ENSPNAG00000015199	-	81	75.177	Pygocentrus_nattereri
ENSSMAG00000003738	scaf4b	54	72.785	ENSRNOG00000002104	Scaf4	60	59.480	Rattus_norvegicus
ENSSMAG00000003738	scaf4b	54	69.006	ENSRBIG00000040007	SCAF4	66	56.777	Rhinopithecus_bieti
ENSSMAG00000003738	scaf4b	54	71.519	ENSRROG00000029488	SCAF4	66	58.065	Rhinopithecus_roxellana
ENSSMAG00000003738	scaf4b	65	63.208	ENSSHAG00000001581	SCAF4	75	53.722	Sarcophilus_harrisii
ENSSMAG00000003738	scaf4b	74	43.274	ENSSFOG00015006338	scaf4a	80	42.506	Scleropages_formosus
ENSSMAG00000003738	scaf4b	100	87.156	ENSSDUG00000012380	scaf4b	100	87.156	Seriola_dumerili
ENSSMAG00000003738	scaf4b	100	87.025	ENSSLDG00000023152	-	100	87.025	Seriola_lalandi_dorsalis
ENSSMAG00000003738	scaf4b	54	72.152	ENSSSCG00000021023	SCAF4	64	60.000	Sus_scrofa
ENSSMAG00000003738	scaf4b	52	70.064	ENSTGUG00000013464	SCAF4	69	60.448	Taeniopygia_guttata
ENSSMAG00000003738	scaf4b	100	62.073	ENSTRUG00000009536	-	100	62.598	Takifugu_rubripes
ENSSMAG00000003738	scaf4b	52	71.519	ENSTTRG00000010963	SCAF4	65	57.358	Tursiops_truncatus
ENSSMAG00000003738	scaf4b	51	78.417	ENSUAMG00000008860	SCAF4	65	60.000	Ursus_americanus
ENSSMAG00000003738	scaf4b	50	78.417	ENSUMAG00000016962	SCAF4	68	61.538	Ursus_maritimus
ENSSMAG00000003738	scaf4b	52	72.152	ENSVVUG00000002953	SCAF4	66	59.387	Vulpes_vulpes
ENSSMAG00000003738	scaf4b	80	42.482	ENSXETG00000013132	scaf8	54	43.188	Xenopus_tropicalis
ENSSMAG00000003738	scaf4b	69	56.349	ENSXETG00000007351	scaf4	73	52.786	Xenopus_tropicalis