EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000003782 (Gene tree)
Gene ID: -
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 13973 bases
Position: chr3:7675014-7688986
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000006149	Npa1	PF11707.8	7.7e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000006228	-	8381	-	ENSSMAP00000006149	2261 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000003782's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000003782's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000003782	urb1	99	43.928	ENSG00000142207	URB1	98	44.102	Homo_sapiens
ENSSMAG00000003782	urb1	97	78.510	ENSAPOG00000020308	urb1	99	77.890	Acanthochromis_polyacanthus
ENSSMAG00000003782	urb1	99	44.615	ENSAMEG00000011998	URB1	99	44.440	Ailuropoda_melanoleuca
ENSSMAG00000003782	urb1	98	69.864	ENSACIG00000003248	urb1	99	69.593	Amphilophus_citrinellus
ENSSMAG00000003782	urb1	95	78.959	ENSAOCG00000010364	urb1	99	78.959	Amphiprion_ocellaris
ENSSMAG00000003782	urb1	97	80.340	ENSAPEG00000010758	urb1	99	80.340	Amphiprion_percula
ENSSMAG00000003782	urb1	100	77.460	ENSATEG00000011790	urb1	100	77.373	Anabas_testudineus
ENSSMAG00000003782	urb1	97	46.807	ENSAPLG00000012791	URB1	99	46.762	Anas_platyrhynchos
ENSSMAG00000003782	urb1	99	44.983	ENSACAG00000002817	URB1	98	45.120	Anolis_carolinensis
ENSSMAG00000003782	urb1	99	44.177	ENSANAG00000024617	URB1	99	43.991	Aotus_nancymaae
ENSSMAG00000003782	urb1	100	75.518	ENSACLG00000024865	urb1	100	75.210	Astatotilapia_calliptera
ENSSMAG00000003782	urb1	99	49.933	ENSAMXG00000012306	urb1	99	49.889	Astyanax_mexicanus
ENSSMAG00000003782	urb1	99	43.815	ENSBTAG00000012412	URB1	98	43.833	Bos_taurus
ENSSMAG00000003782	urb1	99	43.783	ENSCJAG00000009118	URB1	99	43.658	Callithrix_jacchus
ENSSMAG00000003782	urb1	99	43.731	ENSCAFG00000008892	URB1	99	43.446	Canis_familiaris
ENSSMAG00000003782	urb1	99	43.118	ENSCAFG00020025994	-	99	42.944	Canis_lupus_dingo
ENSSMAG00000003782	urb1	99	43.529	ENSCAFG00020025987	-	99	43.243	Canis_lupus_dingo
ENSSMAG00000003782	urb1	99	43.976	ENSCHIG00000015645	URB1	99	43.850	Capra_hircus
ENSSMAG00000003782	urb1	99	44.406	ENSTSYG00000013286	URB1	99	44.016	Carlito_syrichta
ENSSMAG00000003782	urb1	98	43.403	ENSCAPG00000015589	URB1	99	43.054	Cavia_aperea
ENSSMAG00000003782	urb1	99	44.168	ENSCPOG00000006748	URB1	99	43.911	Cavia_porcellus
ENSSMAG00000003782	urb1	99	44.181	ENSCCAG00000021299	URB1	98	44.425	Cebus_capucinus
ENSSMAG00000003782	urb1	99	44.240	ENSCATG00000042630	URB1	99	44.174	Cercocebus_atys
ENSSMAG00000003782	urb1	99	44.682	ENSCLAG00000005262	URB1	99	44.178	Chinchilla_lanigera
ENSSMAG00000003782	urb1	99	43.560	ENSCSAG00000009584	URB1	99	43.499	Chlorocebus_sabaeus
ENSSMAG00000003782	urb1	99	47.677	ENSCPBG00000006454	URB1	99	47.569	Chrysemys_picta_bellii
ENSSMAG00000003782	urb1	99	44.313	ENSCANG00000031088	URB1	99	44.247	Colobus_angolensis_palliatus
ENSSMAG00000003782	urb1	99	43.627	ENSCGRG00001010616	Urb1	99	43.665	Cricetulus_griseus_chok1gshd
ENSSMAG00000003782	urb1	98	43.609	ENSCGRG00000015840	Urb1	99	43.789	Cricetulus_griseus_crigri
ENSSMAG00000003782	urb1	100	71.285	ENSCSEG00000012616	urb1	99	71.241	Cynoglossus_semilaevis
ENSSMAG00000003782	urb1	93	70.514	ENSCVAG00000009076	urb1	98	73.214	Cyprinodon_variegatus
ENSSMAG00000003782	urb1	99	53.590	ENSDARG00000060308	urb1	99	53.634	Danio_rerio
ENSSMAG00000003782	urb1	85	47.565	ENSDNOG00000015586	URB1	99	47.565	Dasypus_novemcinctus
ENSSMAG00000003782	urb1	99	44.106	ENSDORG00000006735	Urb1	99	43.889	Dipodomys_ordii
ENSSMAG00000003782	urb1	85	54.833	ENSETEG00000009080	URB1	85	54.833	Echinops_telfairi
ENSSMAG00000003782	urb1	97	49.738	ENSEASG00005007711	URB1	98	49.738	Equus_asinus_asinus
ENSSMAG00000003782	urb1	95	54.214	ENSECAG00000013206	URB1	98	54.214	Equus_caballus
ENSSMAG00000003782	urb1	99	58.537	ENSELUG00000020516	urb1	99	58.555	Esox_lucius
ENSSMAG00000003782	urb1	99	44.211	ENSFCAG00000002177	URB1	99	44.079	Felis_catus
ENSSMAG00000003782	urb1	98	43.172	ENSFALG00000004636	URB1	98	43.845	Ficedula_albicollis
ENSSMAG00000003782	urb1	99	44.191	ENSFDAG00000007288	URB1	95	44.024	Fukomys_damarensis
ENSSMAG00000003782	urb1	100	65.581	ENSFHEG00000000202	urb1	99	69.040	Fundulus_heteroclitus
ENSSMAG00000003782	urb1	94	59.774	ENSGMOG00000001838	urb1	94	59.774	Gadus_morhua
ENSSMAG00000003782	urb1	99	46.596	ENSGALG00000015887	URB1	99	46.684	Gallus_gallus
ENSSMAG00000003782	urb1	99	66.064	ENSGAFG00000020694	urb1	98	70.670	Gambusia_affinis
ENSSMAG00000003782	urb1	99	75.399	ENSGACG00000011703	urb1	99	74.956	Gasterosteus_aculeatus
ENSSMAG00000003782	urb1	99	47.364	ENSGAGG00000022544	URB1	99	47.187	Gopherus_agassizii
ENSSMAG00000003782	urb1	99	44.196	ENSGGOG00000000285	URB1	98	44.347	Gorilla_gorilla
ENSSMAG00000003782	urb1	100	75.342	ENSHBUG00000001904	urb1	100	75.077	Haplochromis_burtoni
ENSSMAG00000003782	urb1	99	42.716	ENSHGLG00000004907	URB1	99	42.611	Heterocephalus_glaber_female
ENSSMAG00000003782	urb1	99	43.144	ENSHGLG00100010749	URB1	99	43.038	Heterocephalus_glaber_male
ENSSMAG00000003782	urb1	70	75.191	ENSHCOG00000018683	urb1	98	75.723	Hippocampus_comes
ENSSMAG00000003782	urb1	99	48.972	ENSIPUG00000014721	urb1	99	48.798	Ictalurus_punctatus
ENSSMAG00000003782	urb1	99	44.425	ENSSTOG00000004539	URB1	98	44.567	Ictidomys_tridecemlineatus
ENSSMAG00000003782	urb1	91	76.491	ENSKMAG00000006001	urb1	97	76.399	Kryptolebias_marmoratus
ENSSMAG00000003782	urb1	94	78.473	ENSLBEG00000027208	urb1	99	78.473	Labrus_bergylta
ENSSMAG00000003782	urb1	99	44.883	ENSLACG00000017059	URB1	99	44.803	Latimeria_chalumnae
ENSSMAG00000003782	urb1	99	53.763	ENSLOCG00000009190	urb1	99	53.719	Lepisosteus_oculatus
ENSSMAG00000003782	urb1	99	44.517	ENSLAFG00000010407	URB1	99	44.087	Loxodonta_africana
ENSSMAG00000003782	urb1	99	44.086	ENSMFAG00000034391	URB1	96	44.073	Macaca_fascicularis
ENSSMAG00000003782	urb1	99	44.094	ENSMMUG00000010295	URB1	99	44.030	Macaca_mulatta
ENSSMAG00000003782	urb1	99	43.764	ENSMNEG00000032981	URB1	99	43.658	Macaca_nemestrina
ENSSMAG00000003782	urb1	99	44.376	ENSMLEG00000041435	URB1	98	44.679	Mandrillus_leucophaeus
ENSSMAG00000003782	urb1	99	73.571	ENSMAMG00000011238	urb1	99	73.483	Mastacembelus_armatus
ENSSMAG00000003782	urb1	100	68.228	ENSMZEG00005011862	urb1	100	67.921	Maylandia_zebra
ENSSMAG00000003782	urb1	98	46.307	ENSMGAG00000014512	URB1	98	46.819	Meleagris_gallopavo
ENSSMAG00000003782	urb1	92	51.868	ENSMAUG00000010516	Urb1	99	51.537	Mesocricetus_auratus
ENSSMAG00000003782	urb1	99	43.981	ENSMICG00000016424	URB1	99	43.850	Microcebus_murinus
ENSSMAG00000003782	urb1	99	43.663	ENSMOCG00000012613	Urb1	98	43.628	Microtus_ochrogaster
ENSSMAG00000003782	urb1	99	43.505	ENSMODG00000021076	URB1	99	43.461	Monodelphis_domestica
ENSSMAG00000003782	urb1	99	72.203	ENSMALG00000017411	urb1	99	72.115	Monopterus_albus
ENSSMAG00000003782	urb1	99	42.925	MGP_CAROLIEiJ_G0020948	Urb1	99	42.925	Mus_caroli
ENSSMAG00000003782	urb1	99	42.832	ENSMUSG00000039929	Urb1	99	43.139	Mus_musculus
ENSSMAG00000003782	urb1	99	42.919	MGP_PahariEiJ_G0016653	Urb1	99	43.012	Mus_pahari
ENSSMAG00000003782	urb1	99	42.789	MGP_SPRETEiJ_G0021854	Urb1	99	43.095	Mus_spretus
ENSSMAG00000003782	urb1	99	44.167	ENSMPUG00000001123	URB1	99	44.035	Mustela_putorius_furo
ENSSMAG00000003782	urb1	99	42.601	ENSNGAG00000001905	Urb1	99	42.250	Nannospalax_galili
ENSSMAG00000003782	urb1	83	71.093	ENSNBRG00000001049	urb1	99	70.609	Neolamprologus_brichardi
ENSSMAG00000003782	urb1	99	42.725	ENSNLEG00000026872	URB1	98	42.763	Nomascus_leucogenys
ENSSMAG00000003782	urb1	92	49.513	ENSMEUG00000010828	URB1	95	41.180	Notamacropus_eugenii
ENSSMAG00000003782	urb1	99	42.512	ENSOPRG00000013482	URB1	98	42.648	Ochotona_princeps
ENSSMAG00000003782	urb1	99	44.100	ENSODEG00000002587	URB1	99	43.862	Octodon_degus
ENSSMAG00000003782	urb1	100	75.651	ENSONIG00000005599	urb1	100	75.254	Oreochromis_niloticus
ENSSMAG00000003782	urb1	99	44.784	ENSOCUG00000009381	URB1	98	45.066	Oryctolagus_cuniculus
ENSSMAG00000003782	urb1	99	69.329	ENSORLG00000003429	urb1	99	69.373	Oryzias_latipes
ENSSMAG00000003782	urb1	99	69.149	ENSORLG00020013785	urb1	99	69.193	Oryzias_latipes_hni
ENSSMAG00000003782	urb1	93	74.510	ENSORLG00015019421	urb1	99	74.510	Oryzias_latipes_hsok
ENSSMAG00000003782	urb1	77	69.529	ENSOMEG00000002094	urb1	98	70.000	Oryzias_melastigma
ENSSMAG00000003782	urb1	99	43.970	ENSOGAG00000017140	URB1	99	44.474	Otolemur_garnettii
ENSSMAG00000003782	urb1	95	48.351	ENSOARG00000013679	URB1	98	47.745	Ovis_aries
ENSSMAG00000003782	urb1	99	44.054	ENSPPAG00000003423	URB1	98	44.204	Pan_paniscus
ENSSMAG00000003782	urb1	99	44.303	ENSPPRG00000023131	URB1	99	44.079	Panthera_pardus
ENSSMAG00000003782	urb1	87	45.970	ENSPTIG00000016125	URB1	93	45.974	Panthera_tigris_altaica
ENSSMAG00000003782	urb1	99	43.967	ENSPTRG00000013852	URB1	98	44.116	Pan_troglodytes
ENSSMAG00000003782	urb1	99	44.333	ENSPANG00000021964	URB1	99	44.266	Papio_anubis
ENSSMAG00000003782	urb1	99	54.052	ENSPKIG00000003683	urb1	98	54.461	Paramormyrops_kingsleyae
ENSSMAG00000003782	urb1	99	43.720	ENSPEMG00000021205	Urb1	98	43.898	Peromyscus_maniculatus_bairdii
ENSSMAG00000003782	urb1	80	32.578	ENSPMAG00000009733	URB1	99	33.333	Petromyzon_marinus
ENSSMAG00000003782	urb1	99	42.913	ENSPCIG00000016350	URB1	99	43.100	Phascolarctos_cinereus
ENSSMAG00000003782	urb1	97	69.486	ENSPLAG00000004371	urb1	100	69.427	Poecilia_latipinna
ENSSMAG00000003782	urb1	100	69.810	ENSPMEG00000006634	urb1	100	69.797	Poecilia_mexicana
ENSSMAG00000003782	urb1	100	69.309	ENSPREG00000013453	urb1	100	69.251	Poecilia_reticulata
ENSSMAG00000003782	urb1	99	43.977	ENSPPYG00000011359	URB1	98	44.164	Pongo_abelii
ENSSMAG00000003782	urb1	99	39.261	ENSPCAG00000007430	URB1	99	38.940	Procavia_capensis
ENSSMAG00000003782	urb1	99	44.071	ENSPCOG00000022695	URB1	99	44.057	Propithecus_coquereli
ENSSMAG00000003782	urb1	99	43.837	ENSPVAG00000000889	URB1	99	43.755	Pteropus_vampyrus
ENSSMAG00000003782	urb1	100	71.359	ENSPNYG00000010589	urb1	100	70.963	Pundamilia_nyererei
ENSSMAG00000003782	urb1	99	50.504	ENSPNAG00000019324	urb1	99	50.799	Pygocentrus_nattereri
ENSSMAG00000003782	urb1	99	43.185	ENSRNOG00000002080	Urb1	99	43.098	Rattus_norvegicus
ENSSMAG00000003782	urb1	99	43.963	ENSRBIG00000033122	URB1	98	44.308	Rhinopithecus_bieti
ENSSMAG00000003782	urb1	99	43.939	ENSRROG00000040237	URB1	98	44.283	Rhinopithecus_roxellana
ENSSMAG00000003782	urb1	99	44.046	ENSSBOG00000027672	URB1	99	43.918	Saimiri_boliviensis_boliviensis
ENSSMAG00000003782	urb1	99	43.704	ENSSHAG00000005140	URB1	99	43.573	Sarcophilus_harrisii
ENSSMAG00000003782	urb1	93	57.711	ENSSFOG00015000339	urb1	99	57.521	Scleropages_formosus
ENSSMAG00000003782	urb1	100	85.040	ENSSDUG00000012313	urb1	99	84.643	Seriola_dumerili
ENSSMAG00000003782	urb1	100	84.819	ENSSLDG00000023179	urb1	99	84.422	Seriola_lalandi_dorsalis
ENSSMAG00000003782	urb1	99	46.061	ENSSPUG00000012447	URB1	99	46.107	Sphenodon_punctatus
ENSSMAG00000003782	urb1	99	77.504	ENSSPAG00000006325	urb1	99	77.373	Stegastes_partitus
ENSSMAG00000003782	urb1	99	43.514	ENSSSCG00000032024	URB1	98	43.471	Sus_scrofa
ENSSMAG00000003782	urb1	74	48.553	ENSTGUG00000013442	URB1	100	48.349	Taeniopygia_guttata
ENSSMAG00000003782	urb1	99	70.760	ENSTRUG00000009372	urb1	99	70.274	Takifugu_rubripes
ENSSMAG00000003782	urb1	99	68.131	ENSTNIG00000016277	urb1	99	67.643	Tetraodon_nigroviridis
ENSSMAG00000003782	urb1	78	48.563	ENSTBEG00000010044	URB1	77	48.563	Tupaia_belangeri
ENSSMAG00000003782	urb1	90	49.643	ENSTTRG00000007712	URB1	90	49.542	Tursiops_truncatus
ENSSMAG00000003782	urb1	99	44.323	ENSUAMG00000012231	URB1	99	44.235	Ursus_americanus
ENSSMAG00000003782	urb1	82	55.928	ENSUMAG00000017419	URB1	94	45.637	Ursus_maritimus
ENSSMAG00000003782	urb1	67	60.959	ENSVPAG00000001164	URB1	67	60.959	Vicugna_pacos
ENSSMAG00000003782	urb1	94	54.805	ENSVVUG00000000551	URB1	99	44.071	Vulpes_vulpes
ENSSMAG00000003782	urb1	99	45.355	ENSXETG00000009895	urb1	98	45.355	Xenopus_tropicalis
ENSSMAG00000003782	urb1	100	65.170	ENSXCOG00000005500	urb1	98	68.238	Xiphophorus_couchianus
ENSSMAG00000003782	urb1	99	74.863	ENSXMAG00000007253	urb1	98	68.549	Xiphophorus_maculatus