EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000003858 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 3207 bases
Position: chr14:17288990-17292196
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000006362	Smg4_UPF3	PF03467.15	2.6e-53	1	1
ENSSMAP00000006382	Smg4_UPF3	PF03467.15	1.2e-40	1	1
ENSSMAP00000006378	Smg4_UPF3	PF03467.15	2.2e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000006444	-	1476	-	ENSSMAP00000006362	491 (aa)	-	-
ENSSMAT00000006464	-	597	-	ENSSMAP00000006382	198 (aa)	-	-
ENSSMAT00000006460	-	450	-	ENSSMAP00000006378	149 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000003858's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000003858's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000003858	upf3a	95	63.014	ENSSMAG00000012913	upf3b	52	71.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000003858	upf3a	78	67.241	ENSG00000125351	UPF3B	74	70.000	Homo_sapiens
ENSSMAG00000003858	upf3a	100	86.354	ENSAPOG00000013484	upf3a	100	85.132	Acanthochromis_polyacanthus
ENSSMAG00000003858	upf3a	79	73.109	ENSAMEG00000004259	UPF3A	86	56.416	Ailuropoda_melanoleuca
ENSSMAG00000003858	upf3a	98	88.320	ENSACIG00000020468	upf3a	99	87.090	Amphilophus_citrinellus
ENSSMAG00000003858	upf3a	100	86.762	ENSAOCG00000020784	upf3a	100	85.540	Amphiprion_ocellaris
ENSSMAG00000003858	upf3a	100	86.762	ENSAPEG00000003519	upf3a	100	85.540	Amphiprion_percula
ENSSMAG00000003858	upf3a	100	85.540	ENSATEG00000005843	upf3a	100	84.318	Anabas_testudineus
ENSSMAG00000003858	upf3a	70	80.000	ENSACAG00000001540	UPF3A	95	61.124	Anolis_carolinensis
ENSSMAG00000003858	upf3a	78	59.483	ENSANAG00000025598	-	51	55.034	Aotus_nancymaae
ENSSMAG00000003858	upf3a	67	65.000	ENSANAG00000033169	-	55	63.768	Aotus_nancymaae
ENSSMAG00000003858	upf3a	78	67.241	ENSANAG00000021894	-	75	69.565	Aotus_nancymaae
ENSSMAG00000003858	upf3a	100	87.373	ENSACLG00000026274	upf3a	100	86.151	Astatotilapia_calliptera
ENSSMAG00000003858	upf3a	99	75.918	ENSAMXG00000002608	upf3a	100	75.918	Astyanax_mexicanus
ENSSMAG00000003858	upf3a	95	60.690	ENSAMXG00000000199	upf3b	55	65.644	Astyanax_mexicanus
ENSSMAG00000003858	upf3a	79	76.068	ENSBTAG00000047365	-	66	79.310	Bos_taurus
ENSSMAG00000003858	upf3a	78	67.241	ENSBTAG00000035615	UPF3B	52	70.000	Bos_taurus
ENSSMAG00000003858	upf3a	78	66.379	ENSCJAG00000004975	UPF3B	75	68.944	Callithrix_jacchus
ENSSMAG00000003858	upf3a	78	67.241	ENSCAFG00020004074	UPF3B	70	71.014	Canis_lupus_dingo
ENSSMAG00000003858	upf3a	78	67.241	ENSCHIG00000018011	-	52	70.000	Capra_hircus
ENSSMAG00000003858	upf3a	78	66.379	ENSTSYG00000014690	UPF3B	74	64.458	Carlito_syrichta
ENSSMAG00000003858	upf3a	75	52.185	ENSTSYG00000001918	UPF3A	99	52.332	Carlito_syrichta
ENSSMAG00000003858	upf3a	81	50.833	ENSCCAG00000029813	-	51	59.091	Cebus_capucinus
ENSSMAG00000003858	upf3a	79	75.214	ENSCATG00000029733	UPF3A	95	54.095	Cercocebus_atys
ENSSMAG00000003858	upf3a	78	67.241	ENSCATG00000017506	UPF3B	75	69.565	Cercocebus_atys
ENSSMAG00000003858	upf3a	56	69.048	ENSCLAG00000000093	-	79	56.140	Chinchilla_lanigera
ENSSMAG00000003858	upf3a	78	75.214	ENSCSAG00000017388	UPF3A	95	52.092	Chlorocebus_sabaeus
ENSSMAG00000003858	upf3a	73	83.486	ENSCPBG00000022854	-	87	79.825	Chrysemys_picta_bellii
ENSSMAG00000003858	upf3a	72	51.852	ENSCING00000008396	-	88	50.714	Ciona_intestinalis
ENSSMAG00000003858	upf3a	78	67.241	ENSCANG00000029220	UPF3B	50	70.000	Colobus_angolensis_palliatus
ENSSMAG00000003858	upf3a	79	71.795	ENSCGRG00001017387	Upf3a	94	54.808	Cricetulus_griseus_chok1gshd
ENSSMAG00000003858	upf3a	79	71.795	ENSCGRG00000001468	Upf3a	94	54.808	Cricetulus_griseus_crigri
ENSSMAG00000003858	upf3a	99	83.469	ENSCSEG00000005106	upf3a	99	82.245	Cynoglossus_semilaevis
ENSSMAG00000003858	upf3a	100	79.675	ENSCVAG00000022333	upf3a	100	79.472	Cyprinodon_variegatus
ENSSMAG00000003858	upf3a	99	75.356	ENSDARG00000069297	upf3a	100	74.338	Danio_rerio
ENSSMAG00000003858	upf3a	78	77.586	ENSDNOG00000034391	UPF3A	81	63.144	Dasypus_novemcinctus
ENSSMAG00000003858	upf3a	90	49.892	ENSETEG00000010110	UPF3A	91	50.756	Echinops_telfairi
ENSSMAG00000003858	upf3a	78	67.241	ENSEASG00005012919	UPF3B	66	67.692	Equus_asinus_asinus
ENSSMAG00000003858	upf3a	78	67.241	ENSECAG00000016947	UPF3B	66	60.606	Equus_caballus
ENSSMAG00000003858	upf3a	95	80.921	ENSELUG00000011050	upf3a	99	75.102	Esox_lucius
ENSSMAG00000003858	upf3a	72	79.630	ENSFCAG00000014602	UPF3A	89	52.381	Felis_catus
ENSSMAG00000003858	upf3a	97	74.194	ENSFHEG00000010418	upf3a	97	66.146	Fundulus_heteroclitus
ENSSMAG00000003858	upf3a	76	82.301	ENSGALG00000016815	-	74	82.301	Gallus_gallus
ENSSMAG00000003858	upf3a	100	81.301	ENSGAFG00000021170	upf3a	100	80.081	Gambusia_affinis
ENSSMAG00000003858	upf3a	72	73.148	ENSGACG00000017435	upf3b	59	70.000	Gasterosteus_aculeatus
ENSSMAG00000003858	upf3a	72	91.589	ENSGACG00000001972	upf3a	50	94.410	Gasterosteus_aculeatus
ENSSMAG00000003858	upf3a	70	83.810	ENSGAGG00000001952	UPF3A	81	83.099	Gopherus_agassizii
ENSSMAG00000003858	upf3a	78	68.103	ENSGGOG00000023995	UPF3B	64	64.286	Gorilla_gorilla
ENSSMAG00000003858	upf3a	79	74.359	ENSGGOG00000015428	UPF3A	80	55.501	Gorilla_gorilla
ENSSMAG00000003858	upf3a	100	85.947	ENSHBUG00000011325	upf3a	99	84.898	Haplochromis_burtoni
ENSSMAG00000003858	upf3a	95	74.359	ENSHCOG00000013985	upf3a	94	73.504	Hippocampus_comes
ENSSMAG00000003858	upf3a	99	74.134	ENSIPUG00000023450	upf3a	100	72.912	Ictalurus_punctatus
ENSSMAG00000003858	upf3a	79	71.795	ENSSTOG00000030282	-	95	57.965	Ictidomys_tridecemlineatus
ENSSMAG00000003858	upf3a	77	74.783	ENSJJAG00000018099	-	68	76.552	Jaculus_jaculus
ENSSMAG00000003858	upf3a	100	83.740	ENSKMAG00000004381	upf3a	100	82.520	Kryptolebias_marmoratus
ENSSMAG00000003858	upf3a	98	80.745	ENSLBEG00000021570	upf3a	100	78.969	Labrus_bergylta
ENSSMAG00000003858	upf3a	60	41.436	ENSLACG00000006645	UPF3A	64	87.500	Latimeria_chalumnae
ENSSMAG00000003858	upf3a	95	75.000	ENSLOCG00000002665	upf3a	98	68.994	Lepisosteus_oculatus
ENSSMAG00000003858	upf3a	83	53.383	ENSMFAG00000045275	-	81	58.580	Macaca_fascicularis
ENSSMAG00000003858	upf3a	95	58.140	ENSMFAG00000045016	UPF3A	80	54.634	Macaca_fascicularis
ENSSMAG00000003858	upf3a	78	67.241	ENSMFAG00000045414	UPF3B	75	69.565	Macaca_fascicularis
ENSSMAG00000003858	upf3a	95	62.025	ENSMMUG00000007449	UPF3A	83	58.228	Macaca_mulatta
ENSSMAG00000003858	upf3a	78	67.241	ENSMMUG00000020222	UPF3B	75	69.565	Macaca_mulatta
ENSSMAG00000003858	upf3a	72	55.556	ENSMMUG00000046682	-	83	57.988	Macaca_mulatta
ENSSMAG00000003858	upf3a	78	67.241	ENSMNEG00000039794	UPF3B	75	69.565	Macaca_nemestrina
ENSSMAG00000003858	upf3a	71	80.189	ENSMNEG00000036402	UPF3A	78	58.081	Macaca_nemestrina
ENSSMAG00000003858	upf3a	83	53.383	ENSMNEG00000040898	-	81	57.988	Macaca_nemestrina
ENSSMAG00000003858	upf3a	71	80.189	ENSMLEG00000014726	UPF3A	98	49.034	Mandrillus_leucophaeus
ENSSMAG00000003858	upf3a	78	67.241	ENSMLEG00000010999	UPF3B	75	69.565	Mandrillus_leucophaeus
ENSSMAG00000003858	upf3a	100	87.576	ENSMAMG00000018364	upf3a	100	86.354	Mastacembelus_armatus
ENSSMAG00000003858	upf3a	100	87.373	ENSMZEG00005021571	upf3a	100	86.151	Maylandia_zebra
ENSSMAG00000003858	upf3a	59	86.364	ENSMGAG00000014837	UPF3A	96	61.298	Meleagris_gallopavo
ENSSMAG00000003858	upf3a	55	69.512	ENSMICG00000042420	-	54	66.265	Microcebus_murinus
ENSSMAG00000003858	upf3a	78	67.241	ENSMICG00000001743	UPF3B	50	70.000	Microcebus_murinus
ENSSMAG00000003858	upf3a	79	72.650	ENSMOCG00000000550	Upf3a	57	67.822	Microtus_ochrogaster
ENSSMAG00000003858	upf3a	100	85.132	ENSMMOG00000019751	upf3a	100	83.910	Mola_mola
ENSSMAG00000003858	upf3a	72	82.407	ENSMODG00000003159	UPF3A	99	60.659	Monodelphis_domestica
ENSSMAG00000003858	upf3a	79	90.756	ENSMALG00000002454	-	64	90.756	Monopterus_albus
ENSSMAG00000003858	upf3a	79	72.650	ENSMUSG00000038398	Upf3a	85	58.402	Mus_musculus
ENSSMAG00000003858	upf3a	79	72.650	MGP_PahariEiJ_G0021311	Upf3a	85	59.229	Mus_pahari
ENSSMAG00000003858	upf3a	79	72.650	MGP_SPRETEiJ_G0031958	Upf3a	85	58.127	Mus_spretus
ENSSMAG00000003858	upf3a	95	56.571	ENSMPUG00000009139	UPF3A	96	52.066	Mustela_putorius_furo
ENSSMAG00000003858	upf3a	71	77.273	ENSMLUG00000015905	UPF3A	92	57.178	Myotis_lucifugus
ENSSMAG00000003858	upf3a	79	70.085	ENSNGAG00000019314	Upf3a	95	53.465	Nannospalax_galili
ENSSMAG00000003858	upf3a	100	85.743	ENSNBRG00000000828	upf3a	100	84.521	Neolamprologus_brichardi
ENSSMAG00000003858	upf3a	95	61.644	ENSNBRG00000011560	upf3b	96	61.538	Neolamprologus_brichardi
ENSSMAG00000003858	upf3a	81	53.333	ENSNLEG00000027516	-	76	58.125	Nomascus_leucogenys
ENSSMAG00000003858	upf3a	79	73.504	ENSNLEG00000007563	UPF3A	80	56.642	Nomascus_leucogenys
ENSSMAG00000003858	upf3a	78	68.103	ENSNLEG00000014897	UPF3B	67	64.286	Nomascus_leucogenys
ENSSMAG00000003858	upf3a	81	54.032	ENSODEG00000007164	-	68	55.215	Octodon_degus
ENSSMAG00000003858	upf3a	54	59.756	ENSODEG00000000596	-	67	59.398	Octodon_degus
ENSSMAG00000003858	upf3a	79	70.940	ENSODEG00000009176	-	73	63.934	Octodon_degus
ENSSMAG00000003858	upf3a	81	55.000	ENSODEG00000006064	-	77	60.526	Octodon_degus
ENSSMAG00000003858	upf3a	100	85.425	ENSONIG00000006817	upf3a	100	84.211	Oreochromis_niloticus
ENSSMAG00000003858	upf3a	73	55.676	ENSOANG00000006985	-	95	55.676	Ornithorhynchus_anatinus
ENSSMAG00000003858	upf3a	100	81.874	ENSORLG00000010911	upf3a	100	80.652	Oryzias_latipes
ENSSMAG00000003858	upf3a	100	79.633	ENSORLG00020014317	upf3a	100	78.411	Oryzias_latipes_hni
ENSSMAG00000003858	upf3a	100	80.652	ENSORLG00015017339	upf3a	58	79.430	Oryzias_latipes_hsok
ENSSMAG00000003858	upf3a	100	81.466	ENSOMEG00000014425	upf3a	100	80.244	Oryzias_melastigma
ENSSMAG00000003858	upf3a	79	73.729	ENSOARG00000009004	UPF3A	84	53.303	Ovis_aries
ENSSMAG00000003858	upf3a	78	68.103	ENSPPAG00000040390	UPF3B	64	64.286	Pan_paniscus
ENSSMAG00000003858	upf3a	72	79.630	ENSPPRG00000025062	UPF3A	89	52.165	Panthera_pardus
ENSSMAG00000003858	upf3a	78	67.241	ENSPTIG00000015264	UPF3B	50	70.000	Panthera_tigris_altaica
ENSSMAG00000003858	upf3a	78	68.103	ENSPTRG00000022228	UPF3B	64	64.286	Pan_troglodytes
ENSSMAG00000003858	upf3a	79	75.214	ENSPANG00000004346	UPF3A	95	54.741	Papio_anubis
ENSSMAG00000003858	upf3a	87	51.799	ENSPANG00000029350	-	82	57.988	Papio_anubis
ENSSMAG00000003858	upf3a	78	67.241	ENSPANG00000000900	UPF3B	75	69.565	Papio_anubis
ENSSMAG00000003858	upf3a	95	75.000	ENSPKIG00000004422	upf3a	98	70.495	Paramormyrops_kingsleyae
ENSSMAG00000003858	upf3a	95	60.959	ENSPKIG00000019226	upf3b	94	60.959	Paramormyrops_kingsleyae
ENSSMAG00000003858	upf3a	71	83.962	ENSPSIG00000007468	UPF3A	96	62.440	Pelodiscus_sinensis
ENSSMAG00000003858	upf3a	100	81.048	ENSPMGG00000012696	upf3a	100	79.839	Periophthalmus_magnuspinnatus
ENSSMAG00000003858	upf3a	95	60.417	ENSPMGG00000016067	upf3b	58	68.553	Periophthalmus_magnuspinnatus
ENSSMAG00000003858	upf3a	79	73.504	ENSPEMG00000019968	-	92	55.283	Peromyscus_maniculatus_bairdii
ENSSMAG00000003858	upf3a	79	78.632	ENSPCIG00000019590	-	90	67.961	Phascolarctos_cinereus
ENSSMAG00000003858	upf3a	100	81.466	ENSPFOG00000013222	upf3a	100	80.244	Poecilia_formosa
ENSSMAG00000003858	upf3a	99	80.412	ENSPLAG00000011960	upf3a	100	79.175	Poecilia_latipinna
ENSSMAG00000003858	upf3a	100	82.317	ENSPMEG00000000836	upf3a	100	81.098	Poecilia_mexicana
ENSSMAG00000003858	upf3a	76	70.175	ENSPREG00000012214	upf3b	99	59.333	Poecilia_reticulata
ENSSMAG00000003858	upf3a	97	74.839	ENSPREG00000005566	upf3a	91	74.839	Poecilia_reticulata
ENSSMAG00000003858	upf3a	79	73.504	ENSPPYG00000005536	UPF3A	81	56.479	Pongo_abelii
ENSSMAG00000003858	upf3a	78	67.241	ENSPCOG00000021960	UPF3B	50	70.000	Propithecus_coquereli
ENSSMAG00000003858	upf3a	100	87.373	ENSPNYG00000011289	upf3a	100	86.151	Pundamilia_nyererei
ENSSMAG00000003858	upf3a	98	75.155	ENSPNAG00000019532	upf3a	100	73.814	Pygocentrus_nattereri
ENSSMAG00000003858	upf3a	72	75.701	ENSPNAG00000021528	upf3b	53	71.875	Pygocentrus_nattereri
ENSSMAG00000003858	upf3a	70	80.000	ENSRBIG00000034007	UPF3A	89	55.797	Rhinopithecus_bieti
ENSSMAG00000003858	upf3a	70	80.000	ENSRROG00000012212	UPF3A	84	56.039	Rhinopithecus_roxellana
ENSSMAG00000003858	upf3a	78	67.241	ENSRROG00000041031	UPF3B	75	69.565	Rhinopithecus_roxellana
ENSSMAG00000003858	upf3a	81	67.500	ENSSBOG00000019740	UPF3B	76	70.440	Saimiri_boliviensis_boliviensis
ENSSMAG00000003858	upf3a	79	78.632	ENSSHAG00000009895	UPF3A	94	62.972	Sarcophilus_harrisii
ENSSMAG00000003858	upf3a	95	73.026	ENSSFOG00015021851	upf3a	100	65.377	Scleropages_formosus
ENSSMAG00000003858	upf3a	100	89.206	ENSSDUG00000009680	upf3a	100	88.391	Seriola_dumerili
ENSSMAG00000003858	upf3a	100	87.576	ENSSLDG00000009700	upf3a	100	86.354	Seriola_lalandi_dorsalis
ENSSMAG00000003858	upf3a	100	87.373	ENSSPAG00000007938	upf3a	100	86.151	Stegastes_partitus
ENSSMAG00000003858	upf3a	72	83.333	ENSTGUG00000009493	UPF3A	98	63.768	Taeniopygia_guttata
ENSSMAG00000003858	upf3a	100	79.226	ENSTRUG00000012730	upf3a	100	78.004	Takifugu_rubripes
ENSSMAG00000003858	upf3a	72	85.185	ENSTNIG00000014973	upf3a	97	71.960	Tetraodon_nigroviridis
ENSSMAG00000003858	upf3a	72	51.892	ENSTTRG00000015414	UPF3A	71	51.791	Tursiops_truncatus
ENSSMAG00000003858	upf3a	78	67.241	ENSUAMG00000024565	UPF3B	68	66.154	Ursus_americanus
ENSSMAG00000003858	upf3a	78	67.241	ENSVVUG00000011594	UPF3B	75	69.565	Vulpes_vulpes
ENSSMAG00000003858	upf3a	72	72.222	ENSXETG00000007440	upf3b	69	70.625	Xenopus_tropicalis
ENSSMAG00000003858	upf3a	76	71.053	ENSXCOG00000016586	upf3b	99	60.000	Xiphophorus_couchianus
ENSSMAG00000003858	upf3a	100	81.504	ENSXMAG00000013452	upf3a	100	80.285	Xiphophorus_maculatus