EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000004195 (Gene tree)
Gene ID: -
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 2713 bases
Position: chr12:12250699-12253411
Accession: ZDB-GENE-030131-8284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000006792	LSM	PF01423.22	1.2e-20	1	1
ENSSMAP00000006780	LSM	PF01423.22	1.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000006876	-	951	-	ENSSMAP00000006792	109 (aa)	-	-
ENSSMAT00000006865	-	1105	-	ENSSMAP00000006780	110 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000004195's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000004195's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000004195	lsm7	65	38.356	ENSSMAG00000001167	snrpg	83	38.356

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000004195	lsm7	93	95.050	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSSMAG00000004195	lsm7	89	96.907	ENSAPOG00000015573	lsm7	82	98.947	Acanthochromis_polyacanthus
ENSSMAG00000004195	lsm7	94	93.204	ENSAMEG00000005484	LSM7	100	93.204	Ailuropoda_melanoleuca
ENSSMAG00000004195	lsm7	89	98.969	ENSACIG00000006498	lsm7	77	98.969	Amphilophus_citrinellus
ENSSMAG00000004195	lsm7	100	93.636	ENSAOCG00000001077	lsm7	100	93.636	Amphiprion_ocellaris
ENSSMAG00000004195	lsm7	93	100.000	ENSAPEG00000000694	lsm7	100	98.058	Amphiprion_percula
ENSSMAG00000004195	lsm7	100	93.636	ENSAPEG00000024447	lsm7	100	93.636	Amphiprion_percula
ENSSMAG00000004195	lsm7	93	100.000	ENSATEG00000008557	lsm7	100	98.058	Anabas_testudineus
ENSSMAG00000004195	lsm7	93	95.050	ENSANAG00000037196	-	100	93.204	Aotus_nancymaae
ENSSMAG00000004195	lsm7	93	86.139	ENSANAG00000022222	-	100	84.466	Aotus_nancymaae
ENSSMAG00000004195	lsm7	93	99.010	ENSACLG00000021021	lsm7	100	97.087	Astatotilapia_calliptera
ENSSMAG00000004195	lsm7	93	98.020	ENSAMXG00000037622	lsm7	100	96.117	Astyanax_mexicanus
ENSSMAG00000004195	lsm7	93	95.050	ENSBTAG00000004521	LSM7	100	93.204	Bos_taurus
ENSSMAG00000004195	lsm7	92	58.000	WBGene00003081	lsm-7	97	57.426	Caenorhabditis_elegans
ENSSMAG00000004195	lsm7	50	94.444	ENSCJAG00000039713	-	87	74.648	Callithrix_jacchus
ENSSMAG00000004195	lsm7	93	94.118	ENSCAFG00000019409	LSM7	99	94.118	Canis_familiaris
ENSSMAG00000004195	lsm7	96	91.509	ENSCAFG00020018168	LSM7	78	91.509	Canis_lupus_dingo
ENSSMAG00000004195	lsm7	94	94.175	ENSCHIG00000023663	LSM7	100	94.175	Capra_hircus
ENSSMAG00000004195	lsm7	65	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSSMAG00000004195	lsm7	93	95.050	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSSMAG00000004195	lsm7	93	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSSMAG00000004195	lsm7	93	95.050	ENSCATG00000023543	LSM7	100	93.204	Cercocebus_atys
ENSSMAG00000004195	lsm7	93	95.050	ENSCLAG00000011635	LSM7	100	93.204	Chinchilla_lanigera
ENSSMAG00000004195	lsm7	93	95.050	ENSCSAG00000011599	LSM7	100	93.204	Chlorocebus_sabaeus
ENSSMAG00000004195	lsm7	66	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSSMAG00000004195	lsm7	88	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSSMAG00000004195	lsm7	93	95.050	ENSCANG00000035525	LSM7	100	93.204	Colobus_angolensis_palliatus
ENSSMAG00000004195	lsm7	83	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSSMAG00000004195	lsm7	93	94.059	ENSCGRG00001000807	-	100	92.233	Cricetulus_griseus_chok1gshd
ENSSMAG00000004195	lsm7	94	93.204	ENSCGRG00000014355	-	99	93.204	Cricetulus_griseus_crigri
ENSSMAG00000004195	lsm7	83	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSSMAG00000004195	lsm7	98	95.455	ENSCSEG00000014900	lsm7	93	95.455	Cynoglossus_semilaevis
ENSSMAG00000004195	lsm7	93	99.010	ENSCVAG00000021091	lsm7	94	99.010	Cyprinodon_variegatus
ENSSMAG00000004195	lsm7	93	97.030	ENSDARG00000058328	lsm7	100	95.146	Danio_rerio
ENSSMAG00000004195	lsm7	93	93.069	ENSDORG00000024460	Lsm7	99	93.069	Dipodomys_ordii
ENSSMAG00000004195	lsm7	89	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSSMAG00000004195	lsm7	93	92.157	ENSETEG00000012788	LSM7	100	92.157	Echinops_telfairi
ENSSMAG00000004195	lsm7	76	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSSMAG00000004195	lsm7	94	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSSMAG00000004195	lsm7	93	91.089	ENSECAG00000001440	LSM7	65	91.089	Equus_caballus
ENSSMAG00000004195	lsm7	93	94.059	ENSFCAG00000003445	LSM7	100	92.233	Felis_catus
ENSSMAG00000004195	lsm7	93	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSSMAG00000004195	lsm7	88	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSSMAG00000004195	lsm7	93	99.010	ENSFHEG00000006349	lsm7	90	99.010	Fundulus_heteroclitus
ENSSMAG00000004195	lsm7	94	97.087	ENSGMOG00000013320	lsm7	100	97.087	Gadus_morhua
ENSSMAG00000004195	lsm7	93	99.010	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSSMAG00000004195	lsm7	94	99.029	ENSGACG00000010390	lsm7	100	99.029	Gasterosteus_aculeatus
ENSSMAG00000004195	lsm7	93	95.050	ENSGGOG00000010172	LSM7	100	93.204	Gorilla_gorilla
ENSSMAG00000004195	lsm7	97	96.226	ENSHBUG00000004616	lsm7	100	97.087	Haplochromis_burtoni
ENSSMAG00000004195	lsm7	93	95.050	ENSHGLG00000010587	LSM7	100	93.204	Heterocephalus_glaber_female
ENSSMAG00000004195	lsm7	93	95.050	ENSHGLG00100000852	LSM7	100	93.204	Heterocephalus_glaber_male
ENSSMAG00000004195	lsm7	93	99.010	ENSHCOG00000020252	lsm7	100	99.010	Hippocampus_comes
ENSSMAG00000004195	lsm7	93	96.040	ENSIPUG00000024724	lsm7	100	94.175	Ictalurus_punctatus
ENSSMAG00000004195	lsm7	100	90.909	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSSMAG00000004195	lsm7	93	95.050	ENSJJAG00000001936	Lsm7	98	95.050	Jaculus_jaculus
ENSSMAG00000004195	lsm7	93	99.010	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSSMAG00000004195	lsm7	93	100.000	ENSLBEG00000005203	lsm7	98	100.000	Labrus_bergylta
ENSSMAG00000004195	lsm7	93	96.040	ENSLACG00000015700	LSM7	100	94.175	Latimeria_chalumnae
ENSSMAG00000004195	lsm7	93	97.059	ENSLOCG00000004356	lsm7	99	97.059	Lepisosteus_oculatus
ENSSMAG00000004195	lsm7	93	95.098	ENSLAFG00000029302	LSM7	99	95.098	Loxodonta_africana
ENSSMAG00000004195	lsm7	93	95.050	ENSMFAG00000044572	LSM7	100	93.204	Macaca_fascicularis
ENSSMAG00000004195	lsm7	93	95.050	ENSMMUG00000000452	LSM7	99	95.050	Macaca_mulatta
ENSSMAG00000004195	lsm7	93	95.050	ENSMNEG00000004393	LSM7	100	93.204	Macaca_nemestrina
ENSSMAG00000004195	lsm7	93	95.050	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSSMAG00000004195	lsm7	93	99.010	ENSMAMG00000005410	lsm7	100	97.087	Mastacembelus_armatus
ENSSMAG00000004195	lsm7	93	99.010	ENSMZEG00005028055	lsm7	100	97.087	Maylandia_zebra
ENSSMAG00000004195	lsm7	93	97.030	ENSMGAG00000000750	LSM7	92	93.458	Meleagris_gallopavo
ENSSMAG00000004195	lsm7	94	93.204	ENSMAUG00000009276	Lsm7	100	93.204	Mesocricetus_auratus
ENSSMAG00000004195	lsm7	93	95.050	ENSMICG00000009988	-	100	93.204	Microcebus_murinus
ENSSMAG00000004195	lsm7	93	95.050	ENSMICG00000028619	-	100	93.204	Microcebus_murinus
ENSSMAG00000004195	lsm7	93	94.059	ENSMOCG00000016925	Lsm7	100	92.233	Microtus_ochrogaster
ENSSMAG00000004195	lsm7	93	100.000	ENSMMOG00000019645	lsm7	98	98.058	Mola_mola
ENSSMAG00000004195	lsm7	93	96.040	ENSMODG00000004722	LSM7	100	94.175	Monodelphis_domestica
ENSSMAG00000004195	lsm7	93	99.010	ENSMALG00000014511	lsm7	78	99.010	Monopterus_albus
ENSSMAG00000004195	lsm7	92	94.000	MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	Mus_caroli
ENSSMAG00000004195	lsm7	92	94.000	ENSMUSG00000035215	Lsm7	99	92.157	Mus_musculus
ENSSMAG00000004195	lsm7	92	94.000	MGP_PahariEiJ_G0031020	Lsm7	99	92.157	Mus_pahari
ENSSMAG00000004195	lsm7	92	94.000	MGP_SPRETEiJ_G0016425	Lsm7	99	92.157	Mus_spretus
ENSSMAG00000004195	lsm7	92	89.000	ENSMLUG00000024002	-	94	87.255	Myotis_lucifugus
ENSSMAG00000004195	lsm7	94	93.204	ENSMLUG00000013097	-	100	93.204	Myotis_lucifugus
ENSSMAG00000004195	lsm7	93	93.069	ENSNGAG00000021637	Lsm7	100	91.262	Nannospalax_galili
ENSSMAG00000004195	lsm7	93	99.010	ENSNBRG00000001237	-	81	99.010	Neolamprologus_brichardi
ENSSMAG00000004195	lsm7	97	96.226	ENSNBRG00000015770	lsm7	92	95.327	Neolamprologus_brichardi
ENSSMAG00000004195	lsm7	93	95.050	ENSNLEG00000002265	LSM7	100	93.204	Nomascus_leucogenys
ENSSMAG00000004195	lsm7	93	95.050	ENSODEG00000013590	-	100	93.204	Octodon_degus
ENSSMAG00000004195	lsm7	93	75.248	ENSODEG00000008190	-	100	73.786	Octodon_degus
ENSSMAG00000004195	lsm7	93	88.119	ENSODEG00000018769	-	100	86.408	Octodon_degus
ENSSMAG00000004195	lsm7	93	99.010	ENSONIG00000001801	lsm7	90	96.154	Oreochromis_niloticus
ENSSMAG00000004195	lsm7	95	98.077	ENSORLG00000023951	lsm7	100	98.058	Oryzias_latipes
ENSSMAG00000004195	lsm7	95	98.077	ENSORLG00020022226	lsm7	100	98.058	Oryzias_latipes_hni
ENSSMAG00000004195	lsm7	95	98.077	ENSORLG00015020044	lsm7	94	100.000	Oryzias_latipes_hsok
ENSSMAG00000004195	lsm7	93	100.000	ENSOMEG00000012806	lsm7	100	98.058	Oryzias_melastigma
ENSSMAG00000004195	lsm7	93	93.137	ENSOGAG00000000144	-	100	93.137	Otolemur_garnettii
ENSSMAG00000004195	lsm7	94	82.353	ENSOGAG00000024373	-	98	83.168	Otolemur_garnettii
ENSSMAG00000004195	lsm7	94	94.175	ENSOARG00000014013	LSM7	100	94.175	Ovis_aries
ENSSMAG00000004195	lsm7	93	95.050	ENSPPAG00000026500	LSM7	100	93.204	Pan_paniscus
ENSSMAG00000004195	lsm7	93	94.059	ENSPPRG00000008624	LSM7	100	92.233	Panthera_pardus
ENSSMAG00000004195	lsm7	93	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSSMAG00000004195	lsm7	93	95.050	ENSPTRG00000010233	LSM7	100	93.204	Pan_troglodytes
ENSSMAG00000004195	lsm7	93	95.050	ENSPANG00000020668	LSM7	100	93.204	Papio_anubis
ENSSMAG00000004195	lsm7	94	97.087	ENSPKIG00000011325	lsm7	100	96.117	Paramormyrops_kingsleyae
ENSSMAG00000004195	lsm7	93	97.030	ENSPSIG00000017149	LSM7	94	92.523	Pelodiscus_sinensis
ENSSMAG00000004195	lsm7	93	100.000	ENSPMGG00000006498	lsm7	100	98.058	Periophthalmus_magnuspinnatus
ENSSMAG00000004195	lsm7	93	96.040	ENSPCIG00000030454	LSM7	99	96.040	Phascolarctos_cinereus
ENSSMAG00000004195	lsm7	94	97.087	ENSPFOG00000012467	lsm7	91	97.087	Poecilia_formosa
ENSSMAG00000004195	lsm7	94	97.087	ENSPLAG00000000252	lsm7	94	98.020	Poecilia_latipinna
ENSSMAG00000004195	lsm7	94	97.087	ENSPMEG00000000587	lsm7	94	98.020	Poecilia_mexicana
ENSSMAG00000004195	lsm7	72	77.215	ENSPREG00000016718	lsm7	65	75.309	Poecilia_reticulata
ENSSMAG00000004195	lsm7	92	75.248	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSSMAG00000004195	lsm7	93	95.050	ENSPCOG00000017177	LSM7	99	95.050	Propithecus_coquereli
ENSSMAG00000004195	lsm7	93	99.010	ENSPNYG00000006938	lsm7	100	97.087	Pundamilia_nyererei
ENSSMAG00000004195	lsm7	93	98.020	ENSPNAG00000010141	lsm7	99	98.020	Pygocentrus_nattereri
ENSSMAG00000004195	lsm7	92	95.000	ENSRNOG00000019552	Lsm7	99	93.137	Rattus_norvegicus
ENSSMAG00000004195	lsm7	93	95.050	ENSRBIG00000035978	LSM7	100	93.204	Rhinopithecus_bieti
ENSSMAG00000004195	lsm7	93	95.050	ENSRROG00000034044	LSM7	100	93.204	Rhinopithecus_roxellana
ENSSMAG00000004195	lsm7	87	43.689	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSSMAG00000004195	lsm7	93	95.050	ENSSBOG00000034899	LSM7	100	93.204	Saimiri_boliviensis_boliviensis
ENSSMAG00000004195	lsm7	93	96.040	ENSSFOG00015006728	lsm7	100	94.175	Scleropages_formosus
ENSSMAG00000004195	lsm7	93	100.000	ENSSDUG00000001863	lsm7	100	98.058	Seriola_dumerili
ENSSMAG00000004195	lsm7	93	100.000	ENSSLDG00000016339	lsm7	100	98.058	Seriola_lalandi_dorsalis
ENSSMAG00000004195	lsm7	100	93.578	ENSSPAG00000015221	lsm7	100	98.058	Stegastes_partitus
ENSSMAG00000004195	lsm7	93	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSSMAG00000004195	lsm7	93	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSSMAG00000004195	lsm7	93	98.020	ENSTRUG00000022913	lsm7	100	96.117	Takifugu_rubripes
ENSSMAG00000004195	lsm7	93	98.020	ENSTNIG00000015525	lsm7	100	96.117	Tetraodon_nigroviridis
ENSSMAG00000004195	lsm7	64	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSSMAG00000004195	lsm7	94	93.204	ENSUAMG00000000912	LSM7	86	93.204	Ursus_americanus
ENSSMAG00000004195	lsm7	93	94.059	ENSUMAG00000006556	LSM7	79	94.059	Ursus_maritimus
ENSSMAG00000004195	lsm7	65	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSSMAG00000004195	lsm7	93	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSSMAG00000004195	lsm7	93	99.010	ENSXCOG00000002572	lsm7	99	99.010	Xiphophorus_couchianus
ENSSMAG00000004195	lsm7	94	98.058	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus