EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000004275 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 7770 bases
Position: chr9:7101059-7108828
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000006927	PRP21_like_P	PF12230.8	1.1e-50	1	1
ENSSMAP00000006999	PRP21_like_P	PF12230.8	1.1e-50	1	1
ENSSMAP00000006927	Surp	PF01805.20	6.1e-46	1	2
ENSSMAP00000006927	Surp	PF01805.20	6.1e-46	2	2
ENSSMAP00000006999	Surp	PF01805.20	6.1e-46	1	2
ENSSMAP00000006999	Surp	PF01805.20	6.1e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000007088	-	3615	-	ENSSMAP00000006999	778 (aa)	-	A0A2U9BRA9
ENSSMAT00000007012	-	2704	-	ENSSMAP00000006927	778 (aa)	-	A0A2U9BRA9

Gene Model

Click here to download ENSSMAG00000004275's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000004275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000004275	sf3a1	97	83.268	ENSG00000099995	SF3A1	100	81.761	Homo_sapiens
ENSSMAG00000004275	sf3a1	100	91.349	ENSAPOG00000020465	sf3a1	100	91.858	Acanthochromis_polyacanthus
ENSSMAG00000004275	sf3a1	97	82.876	ENSAMEG00000007737	SF3A1	100	81.430	Ailuropoda_melanoleuca
ENSSMAG00000004275	sf3a1	100	90.331	ENSACIG00000020672	sf3a1	100	91.094	Amphilophus_citrinellus
ENSSMAG00000004275	sf3a1	100	91.349	ENSAOCG00000003060	sf3a1	100	91.858	Amphiprion_ocellaris
ENSSMAG00000004275	sf3a1	100	91.476	ENSAPEG00000010735	sf3a1	100	91.985	Amphiprion_percula
ENSSMAG00000004275	sf3a1	98	90.495	ENSATEG00000021201	sf3a1	96	90.850	Anabas_testudineus
ENSSMAG00000004275	sf3a1	96	81.794	ENSAPLG00000009057	SF3A1	100	81.586	Anas_platyrhynchos
ENSSMAG00000004275	sf3a1	100	79.332	ENSACAG00000009415	SF3A1	100	78.616	Anolis_carolinensis
ENSSMAG00000004275	sf3a1	97	83.007	ENSANAG00000032045	SF3A1	100	81.887	Aotus_nancymaae
ENSSMAG00000004275	sf3a1	100	89.936	ENSACLG00000012622	sf3a1	100	91.083	Astatotilapia_calliptera
ENSSMAG00000004275	sf3a1	99	87.006	ENSAMXG00000005382	sf3a1	97	88.351	Astyanax_mexicanus
ENSSMAG00000004275	sf3a1	97	83.007	ENSBTAG00000003390	SF3A1	100	81.761	Bos_taurus
ENSSMAG00000004275	sf3a1	83	46.109	WBGene00004188	prp-21	58	51.773	Caenorhabditis_elegans
ENSSMAG00000004275	sf3a1	97	82.876	ENSCJAG00000010370	SF3A1	100	81.761	Callithrix_jacchus
ENSSMAG00000004275	sf3a1	97	82.876	ENSCAFG00000012559	SF3A1	100	81.635	Canis_familiaris
ENSSMAG00000004275	sf3a1	97	82.876	ENSCAFG00020000838	SF3A1	100	81.635	Canis_lupus_dingo
ENSSMAG00000004275	sf3a1	97	83.007	ENSCHIG00000018642	SF3A1	100	81.761	Capra_hircus
ENSSMAG00000004275	sf3a1	97	82.876	ENSTSYG00000004739	SF3A1	100	81.635	Carlito_syrichta
ENSSMAG00000004275	sf3a1	95	66.578	ENSCAPG00000015414	SF3A1	97	67.204	Cavia_aperea
ENSSMAG00000004275	sf3a1	97	83.268	ENSCPOG00000014589	SF3A1	100	81.635	Cavia_porcellus
ENSSMAG00000004275	sf3a1	97	83.007	ENSCCAG00000032006	SF3A1	100	81.887	Cebus_capucinus
ENSSMAG00000004275	sf3a1	97	82.876	ENSCATG00000029241	SF3A1	100	81.635	Cercocebus_atys
ENSSMAG00000004275	sf3a1	98	82.817	ENSCLAG00000006508	SF3A1	100	81.887	Chinchilla_lanigera
ENSSMAG00000004275	sf3a1	99	82.005	ENSCSAG00000009470	SF3A1	100	81.761	Chlorocebus_sabaeus
ENSSMAG00000004275	sf3a1	58	89.695	ENSCHOG00000005201	SF3A1	60	90.840	Choloepus_hoffmanni
ENSSMAG00000004275	sf3a1	100	81.037	ENSCPBG00000007595	SF3A1	100	81.795	Chrysemys_picta_bellii
ENSSMAG00000004275	sf3a1	98	51.392	ENSCING00000008526	-	99	51.015	Ciona_intestinalis
ENSSMAG00000004275	sf3a1	97	50.193	ENSCSAVG00000005608	-	100	50.000	Ciona_savignyi
ENSSMAG00000004275	sf3a1	99	82.005	ENSCANG00000033564	SF3A1	100	81.761	Colobus_angolensis_palliatus
ENSSMAG00000004275	sf3a1	97	83.553	ENSCGRG00001008933	Sf3a1	100	81.509	Cricetulus_griseus_chok1gshd
ENSSMAG00000004275	sf3a1	97	83.553	ENSCGRG00000006127	Sf3a1	100	81.509	Cricetulus_griseus_crigri
ENSSMAG00000004275	sf3a1	100	90.331	ENSCSEG00000010792	sf3a1	100	90.585	Cynoglossus_semilaevis
ENSSMAG00000004275	sf3a1	100	88.917	ENSCVAG00000004560	sf3a1	100	89.045	Cyprinodon_variegatus
ENSSMAG00000004275	sf3a1	100	86.658	ENSDARG00000041887	sf3a1	100	89.143	Danio_rerio
ENSSMAG00000004275	sf3a1	97	83.029	ENSDNOG00000010629	SF3A1	98	82.061	Dasypus_novemcinctus
ENSSMAG00000004275	sf3a1	97	83.268	ENSDORG00000005613	Sf3a1	100	81.635	Dipodomys_ordii
ENSSMAG00000004275	sf3a1	81	60.566	FBgn0266917	Sf3a1	82	60.370	Drosophila_melanogaster
ENSSMAG00000004275	sf3a1	85	80.960	ENSETEG00000017194	SF3A1	95	82.036	Echinops_telfairi
ENSSMAG00000004275	sf3a1	98	66.295	ENSEBUG00000001285	sf3a1	96	66.504	Eptatretus_burgeri
ENSSMAG00000004275	sf3a1	97	82.876	ENSEASG00005010254	SF3A1	100	81.887	Equus_asinus_asinus
ENSSMAG00000004275	sf3a1	97	82.876	ENSECAG00000023962	SF3A1	100	81.887	Equus_caballus
ENSSMAG00000004275	sf3a1	74	90.164	ENSEEUG00000003159	SF3A1	83	90.164	Erinaceus_europaeus
ENSSMAG00000004275	sf3a1	100	82.636	ENSELUG00000022578	sf3a1	100	83.777	Esox_lucius
ENSSMAG00000004275	sf3a1	97	82.745	ENSFCAG00000011932	SF3A1	100	81.509	Felis_catus
ENSSMAG00000004275	sf3a1	96	81.878	ENSFALG00000006944	SF3A1	100	80.808	Ficedula_albicollis
ENSSMAG00000004275	sf3a1	97	82.745	ENSFDAG00000009560	SF3A1	100	81.509	Fukomys_damarensis
ENSSMAG00000004275	sf3a1	100	88.310	ENSFHEG00000010866	sf3a1	100	89.454	Fundulus_heteroclitus
ENSSMAG00000004275	sf3a1	100	86.061	ENSGMOG00000016024	sf3a1	100	86.701	Gadus_morhua
ENSSMAG00000004275	sf3a1	96	82.299	ENSGALG00000007937	SF3A1	100	80.958	Gallus_gallus
ENSSMAG00000004275	sf3a1	100	89.554	ENSGAFG00000009111	sf3a1	100	89.809	Gambusia_affinis
ENSSMAG00000004275	sf3a1	100	88.593	ENSGACG00000011893	sf3a1	100	88.340	Gasterosteus_aculeatus
ENSSMAG00000004275	sf3a1	96	80.607	ENSGAGG00000000762	SF3A1	99	81.135	Gopherus_agassizii
ENSSMAG00000004275	sf3a1	97	83.268	ENSGGOG00000012631	SF3A1	100	81.761	Gorilla_gorilla
ENSSMAG00000004275	sf3a1	100	90.955	ENSHBUG00000015795	sf3a1	100	91.083	Haplochromis_burtoni
ENSSMAG00000004275	sf3a1	99	81.667	ENSHGLG00000007907	SF3A1	100	81.635	Heterocephalus_glaber_female
ENSSMAG00000004275	sf3a1	99	81.667	ENSHGLG00100013799	SF3A1	100	81.635	Heterocephalus_glaber_male
ENSSMAG00000004275	sf3a1	100	88.250	ENSHCOG00000015423	sf3a1	100	87.229	Hippocampus_comes
ENSSMAG00000004275	sf3a1	97	85.286	ENSIPUG00000002470	sf3a1	98	85.417	Ictalurus_punctatus
ENSSMAG00000004275	sf3a1	99	81.877	ENSSTOG00000013892	SF3A1	100	81.635	Ictidomys_tridecemlineatus
ENSSMAG00000004275	sf3a1	97	83.268	ENSJJAG00000022566	Sf3a1	100	81.533	Jaculus_jaculus
ENSSMAG00000004275	sf3a1	100	89.186	ENSKMAG00000002400	sf3a1	100	89.567	Kryptolebias_marmoratus
ENSSMAG00000004275	sf3a1	100	90.677	ENSLBEG00000022974	sf3a1	100	90.294	Labrus_bergylta
ENSSMAG00000004275	sf3a1	100	81.242	ENSLACG00000003565	SF3A1	100	80.633	Latimeria_chalumnae
ENSSMAG00000004275	sf3a1	100	84.937	ENSLOCG00000008251	sf3a1	99	84.430	Lepisosteus_oculatus
ENSSMAG00000004275	sf3a1	99	53.894	ENSLAFG00000026032	-	99	53.643	Loxodonta_africana
ENSSMAG00000004275	sf3a1	97	83.007	ENSLAFG00000000448	SF3A1	100	81.761	Loxodonta_africana
ENSSMAG00000004275	sf3a1	99	81.877	ENSMFAG00000031979	SF3A1	100	81.635	Macaca_fascicularis
ENSSMAG00000004275	sf3a1	99	81.877	ENSMMUG00000005547	SF3A1	100	81.635	Macaca_mulatta
ENSSMAG00000004275	sf3a1	99	82.005	ENSMNEG00000037229	SF3A1	100	81.761	Macaca_nemestrina
ENSSMAG00000004275	sf3a1	99	82.005	ENSMLEG00000041908	SF3A1	100	81.761	Mandrillus_leucophaeus
ENSSMAG00000004275	sf3a1	98	90.921	ENSMAMG00000006460	sf3a1	96	91.440	Mastacembelus_armatus
ENSSMAG00000004275	sf3a1	100	89.936	ENSMZEG00005009633	sf3a1	100	91.083	Maylandia_zebra
ENSSMAG00000004275	sf3a1	96	82.299	ENSMGAG00000001330	SF3A1	99	82.445	Meleagris_gallopavo
ENSSMAG00000004275	sf3a1	93	79.155	ENSMAUG00000020317	Sf3a1	100	75.443	Mesocricetus_auratus
ENSSMAG00000004275	sf3a1	97	83.137	ENSMICG00000010038	SF3A1	100	81.006	Microcebus_murinus
ENSSMAG00000004275	sf3a1	97	83.137	ENSMOCG00000008438	Sf3a1	100	81.384	Microtus_ochrogaster
ENSSMAG00000004275	sf3a1	100	88.761	ENSMMOG00000015588	sf3a1	99	88.889	Mola_mola
ENSSMAG00000004275	sf3a1	99	81.338	ENSMODG00000009270	SF3A1	100	81.612	Monodelphis_domestica
ENSSMAG00000004275	sf3a1	100	89.467	ENSMALG00000000148	sf3a1	100	90.482	Monopterus_albus
ENSSMAG00000004275	sf3a1	98	82.987	MGP_CAROLIEiJ_G0016029	Sf3a1	99	81.692	Mus_caroli
ENSSMAG00000004275	sf3a1	98	82.987	ENSMUSG00000002129	Sf3a1	99	81.692	Mus_musculus
ENSSMAG00000004275	sf3a1	98	82.857	MGP_PahariEiJ_G0016862	Sf3a1	99	81.156	Mus_pahari
ENSSMAG00000004275	sf3a1	98	82.987	MGP_SPRETEiJ_G0016870	Sf3a1	99	81.692	Mus_spretus
ENSSMAG00000004275	sf3a1	97	83.137	ENSMPUG00000013144	SF3A1	100	81.761	Mustela_putorius_furo
ENSSMAG00000004275	sf3a1	97	82.876	ENSMLUG00000002139	SF3A1	100	81.384	Myotis_lucifugus
ENSSMAG00000004275	sf3a1	97	83.529	ENSNGAG00000016977	Sf3a1	100	81.635	Nannospalax_galili
ENSSMAG00000004275	sf3a1	100	90.470	ENSNBRG00000016642	sf3a1	100	90.597	Neolamprologus_brichardi
ENSSMAG00000004275	sf3a1	99	82.005	ENSNLEG00000003686	SF3A1	100	81.761	Nomascus_leucogenys
ENSSMAG00000004275	sf3a1	94	74.114	ENSMEUG00000008741	SF3A1	100	73.351	Notamacropus_eugenii
ENSSMAG00000004275	sf3a1	97	83.529	ENSOPRG00000016636	SF3A1	100	81.750	Ochotona_princeps
ENSSMAG00000004275	sf3a1	98	82.575	ENSODEG00000002571	SF3A1	100	81.612	Octodon_degus
ENSSMAG00000004275	sf3a1	100	91.338	ENSONIG00000010848	sf3a1	100	91.465	Oreochromis_niloticus
ENSSMAG00000004275	sf3a1	97	82.876	ENSOCUG00000007633	SF3A1	100	81.384	Oryctolagus_cuniculus
ENSSMAG00000004275	sf3a1	96	90.788	ENSORLG00000013050	sf3a1	99	90.521	Oryzias_latipes
ENSSMAG00000004275	sf3a1	99	88.417	ENSORLG00020003236	sf3a1	95	90.788	Oryzias_latipes_hni
ENSSMAG00000004275	sf3a1	100	90.409	ENSORLG00015017411	sf3a1	100	90.153	Oryzias_latipes_hsok
ENSSMAG00000004275	sf3a1	100	90.064	ENSOMEG00000013362	sf3a1	100	89.809	Oryzias_melastigma
ENSSMAG00000004275	sf3a1	97	83.137	ENSOGAG00000012931	SF3A1	100	81.887	Otolemur_garnettii
ENSSMAG00000004275	sf3a1	97	83.246	ENSOARG00000006849	SF3A1	100	81.084	Ovis_aries
ENSSMAG00000004275	sf3a1	97	82.876	ENSPPAG00000041790	SF3A1	100	80.224	Pan_paniscus
ENSSMAG00000004275	sf3a1	97	82.745	ENSPPRG00000004391	SF3A1	100	81.509	Panthera_pardus
ENSSMAG00000004275	sf3a1	97	82.614	ENSPTIG00000000844	SF3A1	99	83.399	Panthera_tigris_altaica
ENSSMAG00000004275	sf3a1	97	83.268	ENSPTRG00000014240	SF3A1	100	81.761	Pan_troglodytes
ENSSMAG00000004275	sf3a1	99	82.005	ENSPANG00000020772	SF3A1	100	81.761	Papio_anubis
ENSSMAG00000004275	sf3a1	79	90.110	ENSPSIG00000012803	SF3A1	100	90.110	Pelodiscus_sinensis
ENSSMAG00000004275	sf3a1	97	87.763	ENSPMGG00000023096	sf3a1	100	89.474	Periophthalmus_magnuspinnatus
ENSSMAG00000004275	sf3a1	97	83.421	ENSPEMG00000009494	Sf3a1	100	81.384	Peromyscus_maniculatus_bairdii
ENSSMAG00000004275	sf3a1	69	76.514	ENSPMAG00000007139	-	100	70.903	Petromyzon_marinus
ENSSMAG00000004275	sf3a1	98	82.315	ENSPCIG00000022692	SF3A1	100	81.360	Phascolarctos_cinereus
ENSSMAG00000004275	sf3a1	100	80.587	ENSPFOG00000016768	sf3a1	100	80.204	Poecilia_formosa
ENSSMAG00000004275	sf3a1	100	89.835	ENSPLAG00000017268	sf3a1	100	90.089	Poecilia_latipinna
ENSSMAG00000004275	sf3a1	96	90.498	ENSPMEG00000019811	sf3a1	100	90.045	Poecilia_mexicana
ENSSMAG00000004275	sf3a1	100	89.835	ENSPREG00000010347	sf3a1	100	90.089	Poecilia_reticulata
ENSSMAG00000004275	sf3a1	99	82.005	ENSPPYG00000011707	SF3A1	100	81.761	Pongo_abelii
ENSSMAG00000004275	sf3a1	58	81.818	ENSPCAG00000003266	SF3A1	57	78.512	Procavia_capensis
ENSSMAG00000004275	sf3a1	97	82.876	ENSPCOG00000026630	SF3A1	100	80.755	Propithecus_coquereli
ENSSMAG00000004275	sf3a1	95	82.195	ENSPVAG00000017719	SF3A1	94	82.999	Pteropus_vampyrus
ENSSMAG00000004275	sf3a1	100	90.955	ENSPNYG00000018706	sf3a1	100	91.083	Pundamilia_nyererei
ENSSMAG00000004275	sf3a1	99	86.497	ENSPNAG00000003721	sf3a1	99	85.478	Pygocentrus_nattereri
ENSSMAG00000004275	sf3a1	98	82.406	ENSRNOG00000005218	Sf3a1	99	81.957	Rattus_norvegicus
ENSSMAG00000004275	sf3a1	99	82.005	ENSRBIG00000032167	SF3A1	100	81.761	Rhinopithecus_bieti
ENSSMAG00000004275	sf3a1	99	82.005	ENSRROG00000044908	SF3A1	100	81.761	Rhinopithecus_roxellana
ENSSMAG00000004275	sf3a1	93	82.857	ENSSBOG00000021960	SF3A1	100	82.916	Saimiri_boliviensis_boliviensis
ENSSMAG00000004275	sf3a1	100	78.753	ENSSHAG00000003666	SF3A1	99	79.389	Sarcophilus_harrisii
ENSSMAG00000004275	sf3a1	100	86.852	ENSSFOG00015004579	sf3a1	100	86.599	Scleropages_formosus
ENSSMAG00000004275	sf3a1	100	91.975	ENSSDUG00000022219	sf3a1	100	91.847	Seriola_dumerili
ENSSMAG00000004275	sf3a1	100	91.975	ENSSLDG00000012642	sf3a1	100	91.847	Seriola_lalandi_dorsalis
ENSSMAG00000004275	sf3a1	97	80.261	ENSSARG00000005960	SF3A1	99	80.654	Sorex_araneus
ENSSMAG00000004275	sf3a1	97	82.055	ENSSPUG00000018863	SF3A1	100	80.175	Sphenodon_punctatus
ENSSMAG00000004275	sf3a1	100	92.102	ENSSPAG00000011856	sf3a1	100	91.975	Stegastes_partitus
ENSSMAG00000004275	sf3a1	97	83.137	ENSSSCG00000010002	SF3A1	100	81.887	Sus_scrofa
ENSSMAG00000004275	sf3a1	96	81.818	ENSTGUG00000010547	SF3A1	99	82.490	Taeniopygia_guttata
ENSSMAG00000004275	sf3a1	79	88.045	ENSTRUG00000006118	sf3a1	100	85.696	Takifugu_rubripes
ENSSMAG00000004275	sf3a1	56	86.940	ENSTNIG00000005713	sf3a1	88	89.381	Tetraodon_nigroviridis
ENSSMAG00000004275	sf3a1	98	75.911	ENSTBEG00000012771	SF3A1	100	75.094	Tupaia_belangeri
ENSSMAG00000004275	sf3a1	97	82.898	ENSTTRG00000001535	SF3A1	100	81.784	Tursiops_truncatus
ENSSMAG00000004275	sf3a1	99	79.848	ENSUAMG00000006750	SF3A1	98	81.050	Ursus_americanus
ENSSMAG00000004275	sf3a1	100	80.779	ENSUMAG00000016665	SF3A1	100	81.281	Ursus_maritimus
ENSSMAG00000004275	sf3a1	97	82.876	ENSVVUG00000003075	SF3A1	100	81.635	Vulpes_vulpes
ENSSMAG00000004275	sf3a1	100	76.759	ENSXETG00000016144	sf3a1	96	83.806	Xenopus_tropicalis
ENSSMAG00000004275	sf3a1	100	89.936	ENSXCOG00000015653	sf3a1	100	90.191	Xiphophorus_couchianus
ENSSMAG00000004275	sf3a1	100	90.191	ENSXMAG00000002753	sf3a1	100	90.446	Xiphophorus_maculatus