EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSMAG00000004550 (Gene tree)
Gene ID
-
Gene Symbol
lsm6
Alias
zgc:92379
Full Name
LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Scophthalmus_maximus
Status
putative
Strand
Minus strand
Length
21264 bases
Position
chr8:7395993-7417256
Accession
ZDB-GENE-040625-50
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSMAP00000007352LSMPF01423.221.8e-1811
ENSSMAP00000007365LSMPF01423.221.8e-1811
ENSSMAP00000007378LSMPF01423.224.4e-1711
ENSSMAP00000007332LSMPF01423.226.2e-1511
ENSSMAP00000007337LSMPF01423.226.2e-1511
ENSSMAP00000007346LSMPF01423.221.3e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSMAT00000007430-1941-ENSSMAP00000007332131 (aa)--
ENSSMAT00000007443-1104-ENSSMAP00000007346177 (aa)--
ENSSMAT00000007435-1214-ENSSMAP00000007337131 (aa)--
ENSSMAT00000007462-1296-ENSSMAP0000000736580 (aa)-A0A2U9BPB3
ENSSMAT00000007474-1210-ENSSMAP0000000737877 (aa)--
ENSSMAT00000007450-1557-ENSSMAP0000000735280 (aa)-A0A2U9BPB3
Gene Model
Click here to download ENSSMAG00000004550's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000004550's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSMAG00000004550lsm68350.000ENSSMAG00000005533snrpf7650.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSMAG00000004550lsm610095.000ENSG00000164167LSM610095.000Homo_sapiens
ENSSMAG00000004550lsm6100100.000ENSAPOG00000019832lsm6100100.000Acanthochromis_polyacanthus
ENSSMAG00000004550lsm610095.000ENSAMEG00000016671LSM610095.000Ailuropoda_melanoleuca
ENSSMAG00000004550lsm6100100.000ENSACIG00000016711lsm6100100.000Amphilophus_citrinellus
ENSSMAG00000004550lsm6100100.000ENSAOCG00000002110lsm652100.000Amphiprion_ocellaris
ENSSMAG00000004550lsm6100100.000ENSAPEG00000023992lsm6100100.000Amphiprion_percula
ENSSMAG00000004550lsm6100100.000ENSATEG00000012610lsm6100100.000Anabas_testudineus
ENSSMAG00000004550lsm69694.805ENSAPLG00000012594LSM69994.805Anas_platyrhynchos
ENSSMAG00000004550lsm610095.000ENSACAG00000004004LSM610095.000Anolis_carolinensis
ENSSMAG00000004550lsm610082.500ENSANAG00000021839-10082.500Aotus_nancymaae
ENSSMAG00000004550lsm610095.000ENSANAG00000030568-10095.000Aotus_nancymaae
ENSSMAG00000004550lsm6100100.000ENSACLG00000025621lsm6100100.000Astatotilapia_calliptera
ENSSMAG00000004550lsm610097.500ENSAMXG00000038738lsm610097.500Astyanax_mexicanus
ENSSMAG00000004550lsm610095.000ENSBTAG00000014060LSM610095.000Bos_taurus
ENSSMAG00000004550lsm610088.750ENSBTAG00000052085-10088.750Bos_taurus
ENSSMAG00000004550lsm69478.667WBGene00003080lsm-69778.667Caenorhabditis_elegans
ENSSMAG00000004550lsm610095.000ENSCJAG00000002482LSM610095.000Callithrix_jacchus
ENSSMAG00000004550lsm610095.000ENSCAFG00000007738LSM610095.000Canis_familiaris
ENSSMAG00000004550lsm610095.000ENSCAFG00020025902LSM610095.000Canis_lupus_dingo
ENSSMAG00000004550lsm610080.000ENSCHIG00000024198-9580.000Capra_hircus
ENSSMAG00000004550lsm69295.775ENSCHIG00000012864-10097.183Capra_hircus
ENSSMAG00000004550lsm610095.000ENSCHIG00000010334-10095.000Capra_hircus
ENSSMAG00000004550lsm68389.062ENSTSYG00000012759-9682.192Carlito_syrichta
ENSSMAG00000004550lsm610095.000ENSTSYG00000026972LSM610095.000Carlito_syrichta
ENSSMAG00000004550lsm68493.846ENSCAPG00000011179-10093.846Cavia_aperea
ENSSMAG00000004550lsm610095.000ENSCAPG00000008104LSM610095.000Cavia_aperea
ENSSMAG00000004550lsm610095.000ENSCPOG00000032655LSM610095.000Cavia_porcellus
ENSSMAG00000004550lsm69994.937ENSCCAG00000020665-9994.937Cebus_capucinus
ENSSMAG00000004550lsm610095.000ENSCCAG00000036437LSM610095.000Cebus_capucinus
ENSSMAG00000004550lsm610072.500ENSCATG00000038799-10072.500Cercocebus_atys
ENSSMAG00000004550lsm610095.000ENSCATG00000002770-10095.000Cercocebus_atys
ENSSMAG00000004550lsm69276.056ENSCLAG00000005685-10077.465Chinchilla_lanigera
ENSSMAG00000004550lsm610095.000ENSCLAG00000005495LSM610095.000Chinchilla_lanigera
ENSSMAG00000004550lsm610095.000ENSCSAG00000003421LSM610095.000Chlorocebus_sabaeus
ENSSMAG00000004550lsm610075.000ENSCHOG00000003420LSM68498.113Choloepus_hoffmanni
ENSSMAG00000004550lsm610095.000ENSCPBG00000027472LSM68495.000Chrysemys_picta_bellii
ENSSMAG00000004550lsm69594.737ENSCING00000019152-9394.737Ciona_intestinalis
ENSSMAG00000004550lsm69596.053ENSCSAVG00000002065-9396.053Ciona_savignyi
ENSSMAG00000004550lsm610068.750ENSCANG00000035214-10068.750Colobus_angolensis_palliatus
ENSSMAG00000004550lsm610095.000ENSCANG00000006849-10095.000Colobus_angolensis_palliatus
ENSSMAG00000004550lsm610095.000ENSCANG00000041263-10095.000Colobus_angolensis_palliatus
ENSSMAG00000004550lsm610095.000ENSCGRG00001017142Lsm610095.000Cricetulus_griseus_chok1gshd
ENSSMAG00000004550lsm610095.000ENSCGRG00000008320Lsm610095.000Cricetulus_griseus_crigri
ENSSMAG00000004550lsm6100100.000ENSCSEG00000000423lsm6100100.000Cynoglossus_semilaevis
ENSSMAG00000004550lsm6100100.000ENSCVAG00000001592lsm6100100.000Cyprinodon_variegatus
ENSSMAG00000004550lsm610097.500ENSDARG00000036995lsm610097.500Danio_rerio
ENSSMAG00000004550lsm69097.101ENSDNOG00000040186-7794.444Dasypus_novemcinctus
ENSSMAG00000004550lsm610093.750ENSDNOG00000044848-10093.750Dasypus_novemcinctus
ENSSMAG00000004550lsm610095.000ENSDORG00000000933Lsm610095.000Dipodomys_ordii
ENSSMAG00000004550lsm69683.117FBgn0034564CG93449783.117Drosophila_melanogaster
ENSSMAG00000004550lsm66091.667ENSETEG00000013098LSM610091.667Echinops_telfairi
ENSSMAG00000004550lsm610096.250ENSEBUG00000017073lsm610096.250Eptatretus_burgeri
ENSSMAG00000004550lsm69097.101ENSEASG00005001533LSM67297.101Equus_asinus_asinus
ENSSMAG00000004550lsm610095.000ENSECAG00000021036LSM610095.000Equus_caballus
ENSSMAG00000004550lsm69967.089ENSEEUG00000002101LSM610067.089Erinaceus_europaeus
ENSSMAG00000004550lsm610097.500ENSELUG00000014301LSM610097.500Esox_lucius
ENSSMAG00000004550lsm610095.000ENSFCAG00000003047LSM610095.000Felis_catus
ENSSMAG00000004550lsm610095.000ENSFALG00000005509LSM69295.000Ficedula_albicollis
ENSSMAG00000004550lsm610095.000ENSFDAG00000020913-10095.000Fukomys_damarensis
ENSSMAG00000004550lsm610085.000ENSFDAG00000019073-10085.000Fukomys_damarensis
ENSSMAG00000004550lsm6100100.000ENSFHEG00000007948lsm6100100.000Fundulus_heteroclitus
ENSSMAG00000004550lsm6100100.000ENSGMOG00000015550lsm6100100.000Gadus_morhua
ENSSMAG00000004550lsm610095.000ENSGALG00000009985LSM610095.000Gallus_gallus
ENSSMAG00000004550lsm6100100.000ENSGAFG00000017763lsm6100100.000Gambusia_affinis
ENSSMAG00000004550lsm610098.750ENSGACG00000017223lsm610098.750Gasterosteus_aculeatus
ENSSMAG00000004550lsm610095.000ENSGAGG00000020980LSM610095.000Gopherus_agassizii
ENSSMAG00000004550lsm610095.000ENSGGOG00000001310LSM610095.000Gorilla_gorilla
ENSSMAG00000004550lsm6100100.000ENSHBUG00000008618lsm6100100.000Haplochromis_burtoni
ENSSMAG00000004550lsm610095.000ENSHGLG00000000205LSM610095.000Heterocephalus_glaber_female
ENSSMAG00000004550lsm610095.000ENSHGLG00100014341LSM610095.000Heterocephalus_glaber_male
ENSSMAG00000004550lsm610098.750ENSHCOG00000005591lsm610098.750Hippocampus_comes
ENSSMAG00000004550lsm610096.250ENSIPUG00000004508lsm610096.250Ictalurus_punctatus
ENSSMAG00000004550lsm610095.000ENSSTOG00000002678LSM610095.000Ictidomys_tridecemlineatus
ENSSMAG00000004550lsm610095.000ENSJJAG00000013845-10095.000Jaculus_jaculus
ENSSMAG00000004550lsm69675.325ENSJJAG00000016942-9775.325Jaculus_jaculus
ENSSMAG00000004550lsm610085.000ENSJJAG00000011211-10085.000Jaculus_jaculus
ENSSMAG00000004550lsm6100100.000ENSKMAG00000004105lsm6100100.000Kryptolebias_marmoratus
ENSSMAG00000004550lsm6100100.000ENSLBEG00000018441lsm6100100.000Labrus_bergylta
ENSSMAG00000004550lsm610095.000ENSLACG00000006937LSM610095.000Latimeria_chalumnae
ENSSMAG00000004550lsm610097.500ENSLOCG00000008852lsm610097.500Lepisosteus_oculatus
ENSSMAG00000004550lsm610096.250ENSLOCG00000017683-10096.250Lepisosteus_oculatus
ENSSMAG00000004550lsm610095.000ENSLAFG00000001952LSM610095.000Loxodonta_africana
ENSSMAG00000004550lsm610095.000ENSMFAG00000033073LSM610095.000Macaca_fascicularis
ENSSMAG00000004550lsm610095.000ENSMNEG00000034820-10095.000Macaca_nemestrina
ENSSMAG00000004550lsm610073.750ENSMNEG00000040412-10073.750Macaca_nemestrina
ENSSMAG00000004550lsm610095.000ENSMLEG00000035153LSM610095.000Mandrillus_leucophaeus
ENSSMAG00000004550lsm6100100.000ENSMAMG00000014029lsm6100100.000Mastacembelus_armatus
ENSSMAG00000004550lsm6100100.000ENSMZEG00005009146lsm6100100.000Maylandia_zebra
ENSSMAG00000004550lsm610095.000ENSMGAG00000003802LSM610095.000Meleagris_gallopavo
ENSSMAG00000004550lsm610095.000ENSMAUG00000014938Lsm610095.000Mesocricetus_auratus
ENSSMAG00000004550lsm610095.000ENSMICG00000042599LSM610095.000Microcebus_murinus
ENSSMAG00000004550lsm69888.462ENSMICG00000047411-9288.462Microcebus_murinus
ENSSMAG00000004550lsm610095.000ENSMOCG00000020049Lsm610095.000Microtus_ochrogaster
ENSSMAG00000004550lsm6100100.000ENSMMOG00000005470lsm6100100.000Mola_mola
ENSSMAG00000004550lsm610093.750ENSMMOG00000007379-10093.750Mola_mola
ENSSMAG00000004550lsm610095.000ENSMODG00000000526LSM610095.000Monodelphis_domestica
ENSSMAG00000004550lsm6100100.000ENSMALG00000002419lsm6100100.000Monopterus_albus
ENSSMAG00000004550lsm610095.000MGP_CAROLIEiJ_G0031245Lsm610095.000Mus_caroli
ENSSMAG00000004550lsm610095.000ENSMUSG00000031683Lsm610095.000Mus_musculus
ENSSMAG00000004550lsm610095.000MGP_PahariEiJ_G0022851Lsm610095.000Mus_pahari
ENSSMAG00000004550lsm610095.000MGP_SPRETEiJ_G0032365Lsm610095.000Mus_spretus
ENSSMAG00000004550lsm69996.203ENSMPUG00000006936LSM69296.203Mustela_putorius_furo
ENSSMAG00000004550lsm610095.000ENSMLUG00000026355LSM610095.000Myotis_lucifugus
ENSSMAG00000004550lsm610095.000ENSNGAG00000019116Lsm610095.000Nannospalax_galili
ENSSMAG00000004550lsm6100100.000ENSNBRG00000004887lsm6100100.000Neolamprologus_brichardi
ENSSMAG00000004550lsm610095.000ENSNLEG00000005584LSM610095.000Nomascus_leucogenys
ENSSMAG00000004550lsm610093.750ENSOPRG00000011199LSM610093.750Ochotona_princeps
ENSSMAG00000004550lsm610093.750ENSODEG00000002307-10093.750Octodon_degus
ENSSMAG00000004550lsm610093.750ENSODEG00000019419-10093.750Octodon_degus
ENSSMAG00000004550lsm610092.500ENSODEG00000020420-10092.500Octodon_degus
ENSSMAG00000004550lsm69685.714ENSODEG00000018684-10085.714Octodon_degus
ENSSMAG00000004550lsm6100100.000ENSONIG00000010005lsm6100100.000Oreochromis_niloticus
ENSSMAG00000004550lsm69869.231ENSOANG00000006894-10069.231Ornithorhynchus_anatinus
ENSSMAG00000004550lsm69869.231ENSOANG00000006895-10069.231Ornithorhynchus_anatinus
ENSSMAG00000004550lsm610098.750ENSORLG00000024158lsm610098.750Oryzias_latipes
ENSSMAG00000004550lsm610098.750ENSORLG00020017383lsm610098.750Oryzias_latipes_hni
ENSSMAG00000004550lsm610098.750ENSORLG00015016903lsm610098.750Oryzias_latipes_hsok
ENSSMAG00000004550lsm6100100.000ENSOMEG00000000074lsm6100100.000Oryzias_melastigma
ENSSMAG00000004550lsm610095.000ENSOGAG00000033153-10095.000Otolemur_garnettii
ENSSMAG00000004550lsm610095.000ENSOGAG00000026665-10095.000Otolemur_garnettii
ENSSMAG00000004550lsm69097.101ENSOARG00000008509-8897.101Ovis_aries
ENSSMAG00000004550lsm69989.873ENSOARG00000011641-9289.873Ovis_aries
ENSSMAG00000004550lsm610095.000ENSPPAG00000037929LSM610095.000Pan_paniscus
ENSSMAG00000004550lsm610095.000ENSPPRG00000012806LSM610095.000Panthera_pardus
ENSSMAG00000004550lsm610095.000ENSPTIG00000019769LSM610095.000Panthera_tigris_altaica
ENSSMAG00000004550lsm610095.000ENSPTRG00000016488LSM610095.000Pan_troglodytes
ENSSMAG00000004550lsm610095.000ENSPANG00000006552LSM610095.000Papio_anubis
ENSSMAG00000004550lsm610097.500ENSPKIG00000016176lsm610097.500Paramormyrops_kingsleyae
ENSSMAG00000004550lsm610095.000ENSPSIG00000016942LSM610095.000Pelodiscus_sinensis
ENSSMAG00000004550lsm6100100.000ENSPMGG00000018004lsm6100100.000Periophthalmus_magnuspinnatus
ENSSMAG00000004550lsm610095.000ENSPEMG00000012410Lsm610095.000Peromyscus_maniculatus_bairdii
ENSSMAG00000004550lsm610095.000ENSPMAG00000006949lsm610095.000Petromyzon_marinus
ENSSMAG00000004550lsm610095.000ENSPCIG00000023469LSM68097.101Phascolarctos_cinereus
ENSSMAG00000004550lsm6100100.000ENSPFOG00000008881lsm6100100.000Poecilia_formosa
ENSSMAG00000004550lsm6100100.000ENSPLAG00000003202lsm6100100.000Poecilia_latipinna
ENSSMAG00000004550lsm6100100.000ENSPMEG00000004000lsm6100100.000Poecilia_mexicana
ENSSMAG00000004550lsm6100100.000ENSPREG00000023235lsm6100100.000Poecilia_reticulata
ENSSMAG00000004550lsm610095.000ENSPPYG00000015105LSM610095.000Pongo_abelii
ENSSMAG00000004550lsm610095.000ENSPCOG00000013899LSM610095.000Propithecus_coquereli
ENSSMAG00000004550lsm6100100.000ENSPNYG00000012614lsm6100100.000Pundamilia_nyererei
ENSSMAG00000004550lsm610097.500ENSPNAG00000018779lsm610097.500Pygocentrus_nattereri
ENSSMAG00000004550lsm610095.000ENSRNOG00000030374Lsm610095.000Rattus_norvegicus
ENSSMAG00000004550lsm610095.000ENSRNOG00000049370LOC10036075010095.000Rattus_norvegicus
ENSSMAG00000004550lsm610095.000ENSRBIG00000027878LSM610095.000Rhinopithecus_bieti
ENSSMAG00000004550lsm610095.000ENSRROG00000024868LSM610095.000Rhinopithecus_roxellana
ENSSMAG00000004550lsm69541.250YDR378C-9345.000Saccharomyces_cerevisiae
ENSSMAG00000004550lsm610095.000ENSSBOG00000021229-10095.000Saimiri_boliviensis_boliviensis
ENSSMAG00000004550lsm610068.750ENSSBOG00000028103-10068.750Saimiri_boliviensis_boliviensis
ENSSMAG00000004550lsm610097.500ENSSFOG00015016480lsm610097.500Scleropages_formosus
ENSSMAG00000004550lsm6100100.000ENSSDUG00000020459lsm650100.000Seriola_dumerili
ENSSMAG00000004550lsm690100.000ENSSLDG00000004136-59100.000Seriola_lalandi_dorsalis
ENSSMAG00000004550lsm6100100.000ENSSLDG00000020533lsm683100.000Seriola_lalandi_dorsalis
ENSSMAG00000004550lsm66091.667ENSSARG00000000689LSM610091.667Sorex_araneus
ENSSMAG00000004550lsm610095.000ENSSPUG00000008657LSM610095.000Sphenodon_punctatus
ENSSMAG00000004550lsm6100100.000ENSSPAG00000003246lsm6100100.000Stegastes_partitus
ENSSMAG00000004550lsm610095.000ENSSSCG00000035973LSM610095.000Sus_scrofa
ENSSMAG00000004550lsm610095.000ENSTGUG00000002663LSM610095.000Taeniopygia_guttata
ENSSMAG00000004550lsm6100100.000ENSTRUG00000023398lsm6100100.000Takifugu_rubripes
ENSSMAG00000004550lsm6100100.000ENSTNIG00000017725lsm6100100.000Tetraodon_nigroviridis
ENSSMAG00000004550lsm610095.000ENSTTRG00000004609LSM610095.000Tursiops_truncatus
ENSSMAG00000004550lsm69097.101ENSUAMG00000014213LSM65797.101Ursus_americanus
ENSSMAG00000004550lsm69097.101ENSUMAG00000015727LSM65797.101Ursus_maritimus
ENSSMAG00000004550lsm610095.000ENSVPAG00000006922LSM610095.000Vicugna_pacos
ENSSMAG00000004550lsm610095.000ENSVVUG00000009254LSM66895.000Vulpes_vulpes
ENSSMAG00000004550lsm610095.000ENSXETG00000023683lsm610095.000Xenopus_tropicalis
ENSSMAG00000004550lsm6100100.000ENSXMAG00000009606lsm6100100.000Xiphophorus_maculatus

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