EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000005055 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Minus strand
Length: 15323 bases
Position: chr7:13108459-13123781
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000008250	UPF1_Zn_bind	PF09416.10	2.1e-75	1	1
ENSSMAP00000008250	ResIII	PF04851.15	6.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000008354	-	7041	-	ENSSMAP00000008250	1113 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000005055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000005055's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000005055	upf1	100	91.853	ENSSMAG00000021018	-	100	91.226

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000005055	upf1	100	89.789	ENSG00000005007	UPF1	100	88.987	Homo_sapiens
ENSSMAG00000005055	upf1	100	91.935	ENSAPOG00000010916	-	100	91.219	Acanthochromis_polyacanthus
ENSSMAG00000005055	upf1	100	97.038	ENSAPOG00000023773	upf1	100	97.038	Acanthochromis_polyacanthus
ENSSMAG00000005055	upf1	100	89.229	ENSAMEG00000011474	UPF1	100	88.431	Ailuropoda_melanoleuca
ENSSMAG00000005055	upf1	93	91.635	ENSACIG00000010985	-	100	90.700	Amphilophus_citrinellus
ENSSMAG00000005055	upf1	100	95.512	ENSACIG00000019949	upf1	100	95.512	Amphilophus_citrinellus
ENSSMAG00000005055	upf1	100	92.025	ENSAOCG00000006352	-	100	91.308	Amphiprion_ocellaris
ENSSMAG00000005055	upf1	100	97.038	ENSAOCG00000018519	upf1	100	97.038	Amphiprion_ocellaris
ENSSMAG00000005055	upf1	100	97.038	ENSAPEG00000016344	upf1	100	97.038	Amphiprion_percula
ENSSMAG00000005055	upf1	100	91.935	ENSAPEG00000006292	-	100	91.308	Amphiprion_percula
ENSSMAG00000005055	upf1	100	91.667	ENSATEG00000016606	-	100	91.129	Anabas_testudineus
ENSSMAG00000005055	upf1	100	96.685	ENSATEG00000017867	upf1	100	96.685	Anabas_testudineus
ENSSMAG00000005055	upf1	95	91.503	ENSAPLG00000009175	UPF1	100	90.467	Anas_platyrhynchos
ENSSMAG00000005055	upf1	95	89.794	ENSANAG00000024107	UPF1	95	88.847	Aotus_nancymaae
ENSSMAG00000005055	upf1	100	95.691	ENSACLG00000007181	upf1	100	95.691	Astatotilapia_calliptera
ENSSMAG00000005055	upf1	100	91.846	ENSACLG00000022630	-	100	91.039	Astatotilapia_calliptera
ENSSMAG00000005055	upf1	100	92.549	ENSAMXG00000042187	upf1	100	92.460	Astyanax_mexicanus
ENSSMAG00000005055	upf1	100	89.248	ENSBTAG00000020922	UPF1	100	88.451	Bos_taurus
ENSSMAG00000005055	upf1	86	51.537	WBGene00004880	smg-2	83	54.153	Caenorhabditis_elegans
ENSSMAG00000005055	upf1	100	88.928	ENSCJAG00000019627	UPF1	100	88.133	Callithrix_jacchus
ENSSMAG00000005055	upf1	100	89.015	ENSCAFG00000014578	UPF1	100	88.220	Canis_familiaris
ENSSMAG00000005055	upf1	100	89.877	ENSCAFG00020012347	UPF1	100	89.075	Canis_lupus_dingo
ENSSMAG00000005055	upf1	100	90.115	ENSCHIG00000011018	UPF1	100	89.311	Capra_hircus
ENSSMAG00000005055	upf1	95	91.199	ENSTSYG00000008877	UPF1	98	90.253	Carlito_syrichta
ENSSMAG00000005055	upf1	96	90.556	ENSCAPG00000005758	UPF1	95	89.897	Cavia_aperea
ENSSMAG00000005055	upf1	100	90.248	ENSCPOG00000025463	UPF1	100	89.105	Cavia_porcellus
ENSSMAG00000005055	upf1	100	89.789	ENSCCAG00000032175	UPF1	100	88.987	Cebus_capucinus
ENSSMAG00000005055	upf1	94	91.259	ENSCATG00000040306	UPF1	98	89.916	Cercocebus_atys
ENSSMAG00000005055	upf1	95	91.105	ENSCLAG00000004037	UPF1	99	90.253	Chinchilla_lanigera
ENSSMAG00000005055	upf1	100	89.789	ENSCSAG00000005276	UPF1	100	88.987	Chlorocebus_sabaeus
ENSSMAG00000005055	upf1	100	90.442	ENSCPBG00000012513	UPF1	100	89.371	Chrysemys_picta_bellii
ENSSMAG00000005055	upf1	76	79.695	ENSCING00000021399	-	99	79.343	Ciona_intestinalis
ENSSMAG00000005055	upf1	99	71.695	ENSCSAVG00000006533	-	99	71.353	Ciona_savignyi
ENSSMAG00000005055	upf1	95	91.105	ENSCANG00000029819	UPF1	97	90.159	Colobus_angolensis_palliatus
ENSSMAG00000005055	upf1	100	89.832	ENSCGRG00001021067	Upf1	100	89.115	Cricetulus_griseus_chok1gshd
ENSSMAG00000005055	upf1	95	90.730	ENSCGRG00000013480	Upf1	98	89.878	Cricetulus_griseus_crigri
ENSSMAG00000005055	upf1	100	92.377	ENSCSEG00000016159	-	100	91.300	Cynoglossus_semilaevis
ENSSMAG00000005055	upf1	100	88.879	ENSCSEG00000017239	upf1	100	88.819	Cynoglossus_semilaevis
ENSSMAG00000005055	upf1	100	91.756	ENSCVAG00000010561	upf1	100	91.039	Cyprinodon_variegatus
ENSSMAG00000005055	upf1	100	92.460	ENSDARG00000016302	upf1	100	92.370	Danio_rerio
ENSSMAG00000005055	upf1	95	88.587	ENSDORG00000009984	Upf1	95	87.734	Dipodomys_ordii
ENSSMAG00000005055	upf1	83	72.252	FBgn0030354	Upf1	81	71.028	Drosophila_melanogaster
ENSSMAG00000005055	upf1	53	87.059	ENSEBUG00000010069	upf1	96	87.395	Eptatretus_burgeri
ENSSMAG00000005055	upf1	100	90.115	ENSEASG00005006549	UPF1	100	89.311	Equus_asinus_asinus
ENSSMAG00000005055	upf1	100	90.115	ENSECAG00000010639	UPF1	100	89.311	Equus_caballus
ENSSMAG00000005055	upf1	100	93.537	ENSELUG00000020917	upf1	100	92.819	Esox_lucius
ENSSMAG00000005055	upf1	100	91.786	ENSELUG00000012916	-	100	91.696	Esox_lucius
ENSSMAG00000005055	upf1	100	89.015	ENSFCAG00000009757	UPF1	100	88.220	Felis_catus
ENSSMAG00000005055	upf1	95	92.105	ENSFALG00000009312	UPF1	96	90.969	Ficedula_albicollis
ENSSMAG00000005055	upf1	95	91.011	ENSFDAG00000014816	UPF1	99	90.159	Fukomys_damarensis
ENSSMAG00000005055	upf1	87	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSSMAG00000005055	upf1	100	91.964	ENSFHEG00000006428	upf1	97	94.910	Fundulus_heteroclitus
ENSSMAG00000005055	upf1	100	90.071	ENSGMOG00000007541	upf1	100	89.539	Gadus_morhua
ENSSMAG00000005055	upf1	100	90.123	ENSGALG00000003220	UPF1	100	89.056	Gallus_gallus
ENSSMAG00000005055	upf1	100	91.756	ENSGAFG00000004831	upf1	100	91.129	Gambusia_affinis
ENSSMAG00000005055	upf1	62	96.110	ENSGAFG00000015443	-	85	96.110	Gambusia_affinis
ENSSMAG00000005055	upf1	100	90.756	ENSGAGG00000022217	UPF1	100	89.947	Gopherus_agassizii
ENSSMAG00000005055	upf1	95	92.053	ENSGGOG00000002608	UPF1	99	91.098	Gorilla_gorilla
ENSSMAG00000005055	upf1	88	94.872	ENSHBUG00000014694	upf1	100	94.872	Haplochromis_burtoni
ENSSMAG00000005055	upf1	85	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSMAG00000005055	upf1	100	88.753	ENSHGLG00000010900	UPF1	100	88.133	Heterocephalus_glaber_female
ENSSMAG00000005055	upf1	95	89.232	ENSHGLG00100005904	UPF1	96	88.472	Heterocephalus_glaber_male
ENSSMAG00000005055	upf1	100	91.487	ENSHCOG00000008918	upf1	100	89.858	Hippocampus_comes
ENSSMAG00000005055	upf1	100	92.549	ENSIPUG00000005108	UPF1	100	92.460	Ictalurus_punctatus
ENSSMAG00000005055	upf1	100	89.701	ENSSTOG00000009196	UPF1	100	88.987	Ictidomys_tridecemlineatus
ENSSMAG00000005055	upf1	100	89.211	ENSJJAG00000023151	Upf1	100	88.499	Jaculus_jaculus
ENSSMAG00000005055	upf1	100	91.756	ENSKMAG00000004962	upf1	100	90.950	Kryptolebias_marmoratus
ENSSMAG00000005055	upf1	100	96.858	ENSLBEG00000014862	upf1	100	96.858	Labrus_bergylta
ENSSMAG00000005055	upf1	100	91.853	ENSLBEG00000027848	-	100	91.137	Labrus_bergylta
ENSSMAG00000005055	upf1	64	91.433	ENSLACG00000008482	UPF1	100	89.747	Latimeria_chalumnae
ENSSMAG00000005055	upf1	100	92.287	ENSLOCG00000002072	upf1	100	91.839	Lepisosteus_oculatus
ENSSMAG00000005055	upf1	100	88.899	ENSLAFG00000014963	UPF1	100	88.112	Loxodonta_africana
ENSSMAG00000005055	upf1	100	89.552	ENSMFAG00000037748	UPF1	100	88.752	Macaca_fascicularis
ENSSMAG00000005055	upf1	100	89.317	ENSMMUG00000023286	UPF1	100	88.519	Macaca_mulatta
ENSSMAG00000005055	upf1	100	89.552	ENSMNEG00000000046	UPF1	100	88.752	Macaca_nemestrina
ENSSMAG00000005055	upf1	95	91.105	ENSMLEG00000028404	UPF1	99	90.159	Mandrillus_leucophaeus
ENSSMAG00000005055	upf1	100	96.685	ENSMAMG00000006229	upf1	100	96.685	Mastacembelus_armatus
ENSSMAG00000005055	upf1	100	91.495	ENSMAMG00000006231	-	100	91.137	Mastacembelus_armatus
ENSSMAG00000005055	upf1	100	91.846	ENSMZEG00005016386	-	100	91.039	Maylandia_zebra
ENSSMAG00000005055	upf1	100	96.679	ENSMZEG00005003489	upf1	100	96.679	Maylandia_zebra
ENSSMAG00000005055	upf1	95	91.020	ENSMGAG00000004745	UPF1	100	89.981	Meleagris_gallopavo
ENSSMAG00000005055	upf1	95	90.730	ENSMAUG00000011398	Upf1	95	89.878	Mesocricetus_auratus
ENSSMAG00000005055	upf1	100	89.877	ENSMICG00000001659	UPF1	100	89.075	Microcebus_murinus
ENSSMAG00000005055	upf1	100	88.967	ENSMOCG00000005699	Upf1	100	88.344	Microtus_ochrogaster
ENSSMAG00000005055	upf1	100	94.879	ENSMMOG00000007881	upf1	100	94.879	Mola_mola
ENSSMAG00000005055	upf1	95	89.528	ENSMMOG00000007537	-	99	88.774	Mola_mola
ENSSMAG00000005055	upf1	100	89.043	ENSMODG00000003689	UPF1	100	88.251	Monodelphis_domestica
ENSSMAG00000005055	upf1	100	94.250	ENSMALG00000000144	upf1	100	94.250	Monopterus_albus
ENSSMAG00000005055	upf1	100	90.982	ENSMALG00000018100	-	100	90.268	Monopterus_albus
ENSSMAG00000005055	upf1	100	89.744	MGP_CAROLIEiJ_G0031142	Upf1	100	89.027	Mus_caroli
ENSSMAG00000005055	upf1	100	89.744	ENSMUSG00000058301	Upf1	100	89.027	Mus_musculus
ENSSMAG00000005055	upf1	100	89.744	MGP_PahariEiJ_G0021607	Upf1	100	89.027	Mus_pahari
ENSSMAG00000005055	upf1	100	89.744	MGP_SPRETEiJ_G0032260	Upf1	100	89.027	Mus_spretus
ENSSMAG00000005055	upf1	100	89.877	ENSMPUG00000015516	UPF1	100	89.075	Mustela_putorius_furo
ENSSMAG00000005055	upf1	99	89.753	ENSMLUG00000012122	UPF1	99	88.948	Myotis_lucifugus
ENSSMAG00000005055	upf1	100	88.734	ENSNGAG00000024107	Upf1	100	88.024	Nannospalax_galili
ENSSMAG00000005055	upf1	100	92.819	ENSNBRG00000000670	upf1	100	92.460	Neolamprologus_brichardi
ENSSMAG00000005055	upf1	100	88.505	ENSNBRG00000022069	-	100	90.421	Neolamprologus_brichardi
ENSSMAG00000005055	upf1	95	85.487	ENSNLEG00000006062	UPF1	99	84.536	Nomascus_leucogenys
ENSSMAG00000005055	upf1	83	85.389	ENSMEUG00000014146	-	83	83.270	Notamacropus_eugenii
ENSSMAG00000005055	upf1	95	85.606	ENSOPRG00000014018	UPF1	88	89.157	Ochotona_princeps
ENSSMAG00000005055	upf1	100	90.062	ENSODEG00000012426	UPF1	100	89.254	Octodon_degus
ENSSMAG00000005055	upf1	100	91.846	ENSONIG00000012729	-	100	91.039	Oreochromis_niloticus
ENSSMAG00000005055	upf1	100	96.679	ENSONIG00000010452	upf1	100	96.679	Oreochromis_niloticus
ENSSMAG00000005055	upf1	100	89.248	ENSOANG00000004568	UPF1	100	88.287	Ornithorhynchus_anatinus
ENSSMAG00000005055	upf1	100	91.846	ENSORLG00000008453	upf1	100	90.698	Oryzias_latipes
ENSSMAG00000005055	upf1	100	91.764	ENSORLG00020014758	upf1	100	90.617	Oryzias_latipes_hni
ENSSMAG00000005055	upf1	100	91.764	ENSORLG00015010165	upf1	100	90.617	Oryzias_latipes_hsok
ENSSMAG00000005055	upf1	100	92.294	ENSOMEG00000003665	upf1	100	91.145	Oryzias_melastigma
ENSSMAG00000005055	upf1	100	89.877	ENSOGAG00000012866	UPF1	100	89.075	Otolemur_garnettii
ENSSMAG00000005055	upf1	96	88.033	ENSOARG00000010739	UPF1	100	87.024	Ovis_aries
ENSSMAG00000005055	upf1	95	91.045	ENSPPAG00000043884	UPF1	96	90.103	Pan_paniscus
ENSSMAG00000005055	upf1	100	89.015	ENSPPRG00000023470	UPF1	100	88.220	Panthera_pardus
ENSSMAG00000005055	upf1	95	89.991	ENSPTIG00000010159	UPF1	99	89.036	Panthera_tigris_altaica
ENSSMAG00000005055	upf1	100	89.552	ENSPTRG00000010721	UPF1	100	88.752	Pan_troglodytes
ENSSMAG00000005055	upf1	100	89.552	ENSPANG00000008847	UPF1	100	88.752	Papio_anubis
ENSSMAG00000005055	upf1	90	94.632	ENSPKIG00000006069	upf1	95	96.037	Paramormyrops_kingsleyae
ENSSMAG00000005055	upf1	70	90.665	ENSPSIG00000009491	UPF1	100	89.117	Pelodiscus_sinensis
ENSSMAG00000005055	upf1	100	91.487	ENSPMGG00000017327	upf1	100	91.577	Periophthalmus_magnuspinnatus
ENSSMAG00000005055	upf1	100	88.967	ENSPEMG00000001085	Upf1	100	88.256	Peromyscus_maniculatus_bairdii
ENSSMAG00000005055	upf1	100	85.931	ENSPMAG00000001206	upf1	100	85.307	Petromyzon_marinus
ENSSMAG00000005055	upf1	100	90.396	ENSPCIG00000006156	UPF1	100	89.506	Phascolarctos_cinereus
ENSSMAG00000005055	upf1	100	91.756	ENSPLAG00000016232	-	100	91.129	Poecilia_latipinna
ENSSMAG00000005055	upf1	100	93.531	ENSPLAG00000018155	-	100	92.633	Poecilia_latipinna
ENSSMAG00000005055	upf1	100	93.082	ENSPMEG00000011443	-	100	92.093	Poecilia_mexicana
ENSSMAG00000005055	upf1	100	91.674	ENSPMEG00000016319	-	100	91.047	Poecilia_mexicana
ENSSMAG00000005055	upf1	100	91.577	ENSPREG00000011247	-	100	90.950	Poecilia_reticulata
ENSSMAG00000005055	upf1	100	93.363	ENSPREG00000009940	upf1	100	92.466	Poecilia_reticulata
ENSSMAG00000005055	upf1	100	84.045	ENSPPYG00000009752	UPF1	100	83.246	Pongo_abelii
ENSSMAG00000005055	upf1	76	98.316	ENSPCAG00000012962	UPF1	76	98.316	Procavia_capensis
ENSSMAG00000005055	upf1	100	89.483	ENSPCOG00000023813	UPF1	100	88.684	Propithecus_coquereli
ENSSMAG00000005055	upf1	67	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSMAG00000005055	upf1	100	96.679	ENSPNYG00000003694	upf1	100	96.679	Pundamilia_nyererei
ENSSMAG00000005055	upf1	100	91.756	ENSPNYG00000016731	-	100	91.039	Pundamilia_nyererei
ENSSMAG00000005055	upf1	100	92.639	ENSPNAG00000025614	upf1	100	92.549	Pygocentrus_nattereri
ENSSMAG00000005055	upf1	100	89.744	ENSRNOG00000020134	Upf1	100	89.027	Rattus_norvegicus
ENSSMAG00000005055	upf1	95	88.764	ENSRBIG00000013894	UPF1	98	91.066	Rhinopithecus_bieti
ENSSMAG00000005055	upf1	95	91.105	ENSRROG00000040935	UPF1	98	91.066	Rhinopithecus_roxellana
ENSSMAG00000005055	upf1	73	56.793	YMR080C	NAM7	84	56.793	Saccharomyces_cerevisiae
ENSSMAG00000005055	upf1	94	91.268	ENSSBOG00000023632	UPF1	96	90.320	Saimiri_boliviensis_boliviensis
ENSSMAG00000005055	upf1	95	91.402	ENSSHAG00000010499	UPF1	100	90.365	Sarcophilus_harrisii
ENSSMAG00000005055	upf1	100	92.563	ENSSFOG00015021095	upf1	100	91.935	Scleropages_formosus
ENSSMAG00000005055	upf1	100	97.491	ENSSDUG00000013320	upf1	100	97.491	Seriola_dumerili
ENSSMAG00000005055	upf1	100	91.853	ENSSDUG00000009629	-	100	91.226	Seriola_dumerili
ENSSMAG00000005055	upf1	100	91.853	ENSSLDG00000006878	-	100	91.226	Seriola_lalandi_dorsalis
ENSSMAG00000005055	upf1	100	96.505	ENSSLDG00000020868	upf1	100	96.505	Seriola_lalandi_dorsalis
ENSSMAG00000005055	upf1	100	90.417	ENSSPUG00000010538	UPF1	97	94.080	Sphenodon_punctatus
ENSSMAG00000005055	upf1	100	93.441	ENSSPAG00000000003	upf1	100	93.441	Stegastes_partitus
ENSSMAG00000005055	upf1	100	91.756	ENSSPAG00000011521	-	100	90.966	Stegastes_partitus
ENSSMAG00000005055	upf1	100	90.115	ENSSSCG00000039301	UPF1	99	91.115	Sus_scrofa
ENSSMAG00000005055	upf1	81	86.277	ENSTGUG00000001057	UPF1	100	89.793	Taeniopygia_guttata
ENSSMAG00000005055	upf1	100	90.950	ENSTRUG00000005131	-	100	90.323	Takifugu_rubripes
ENSSMAG00000005055	upf1	100	93.896	ENSTRUG00000000150	upf1	100	93.716	Takifugu_rubripes
ENSSMAG00000005055	upf1	100	86.496	ENSTTRG00000011544	UPF1	100	85.601	Tursiops_truncatus
ENSSMAG00000005055	upf1	100	89.877	ENSUAMG00000007093	UPF1	100	89.075	Ursus_americanus
ENSSMAG00000005055	upf1	95	92.068	ENSUMAG00000006652	UPF1	99	91.735	Ursus_maritimus
ENSSMAG00000005055	upf1	100	89.877	ENSVVUG00000007797	UPF1	100	89.075	Vulpes_vulpes
ENSSMAG00000005055	upf1	100	77.826	ENSXETG00000013602	upf1	100	76.870	Xenopus_tropicalis
ENSSMAG00000005055	upf1	97	91.636	ENSXCOG00000015275	-	96	91.357	Xiphophorus_couchianus
ENSSMAG00000005055	upf1	94	92.249	ENSXCOG00000005764	-	99	91.579	Xiphophorus_couchianus
ENSSMAG00000005055	upf1	100	91.824	ENSXMAG00000001703	-	100	91.554	Xiphophorus_maculatus
ENSSMAG00000005055	upf1	100	91.764	ENSXMAG00000002540	-	100	91.137	Xiphophorus_maculatus