EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000005463 (Gene tree)
Gene ID: -
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 16229 bases
Position: chr9:7545399-7561627
Accession: ZDB-GENE-081105-64
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000009010	ResIII	PF04851.15	6.9e-27	1	2
ENSSMAP00000009010	ResIII	PF04851.15	6.9e-27	2	2
ENSSMAP00000008952	ResIII	PF04851.15	8.7e-27	1	2
ENSSMAP00000008952	ResIII	PF04851.15	8.7e-27	2	2
ENSSMAP00000009010	DEAD	PF00270.29	3.2e-54	1	2
ENSSMAP00000009010	DEAD	PF00270.29	3.2e-54	2	2
ENSSMAP00000008952	DEAD	PF00270.29	4.6e-54	1	2
ENSSMAP00000008952	DEAD	PF00270.29	4.6e-54	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000009062	-	10464	-	ENSSMAP00000008952	2136 (aa)	-	A0A2U9BRE9
ENSSMAT00000009120	-	5655	-	ENSSMAP00000009010	1884 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000005463's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000005463's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000005463	snrnp200	72	32.278	ENSSMAG00000006907	hfm1	77	32.278
ENSSMAG00000005463	snrnp200	86	45.886	ENSSMAG00000012927	ascc3	87	42.248

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000005463	snrnp200	99	90.356	ENSG00000144028	SNRNP200	99	90.465	Homo_sapiens
ENSSMAG00000005463	snrnp200	100	98.455	ENSAPOG00000010223	snrnp200	100	98.455	Acanthochromis_polyacanthus
ENSSMAG00000005463	snrnp200	99	90.403	ENSAMEG00000008996	SNRNP200	99	90.512	Ailuropoda_melanoleuca
ENSSMAG00000005463	snrnp200	99	97.750	ENSACIG00000001764	snrnp200	98	97.750	Amphilophus_citrinellus
ENSSMAG00000005463	snrnp200	100	98.221	ENSAOCG00000024593	snrnp200	100	98.221	Amphiprion_ocellaris
ENSSMAG00000005463	snrnp200	99	97.696	ENSAPEG00000012554	snrnp200	100	97.696	Amphiprion_percula
ENSSMAG00000005463	snrnp200	100	98.221	ENSATEG00000022522	snrnp200	100	98.221	Anabas_testudineus
ENSSMAG00000005463	snrnp200	99	90.570	ENSAPLG00000004313	SNRNP200	99	90.634	Anas_platyrhynchos
ENSSMAG00000005463	snrnp200	99	89.872	ENSACAG00000000434	SNRNP200	100	89.872	Anolis_carolinensis
ENSSMAG00000005463	snrnp200	99	87.623	ENSANAG00000036625	SNRNP200	99	87.723	Aotus_nancymaae
ENSSMAG00000005463	snrnp200	100	97.425	ENSACLG00000011188	snrnp200	100	97.425	Astatotilapia_calliptera
ENSSMAG00000005463	snrnp200	99	94.734	ENSAMXG00000005684	snrnp200	99	94.734	Astyanax_mexicanus
ENSSMAG00000005463	snrnp200	99	90.169	ENSBTAG00000000848	SNRNP200	99	90.277	Bos_taurus
ENSSMAG00000005463	snrnp200	99	90.356	ENSCJAG00000007514	SNRNP200	99	90.465	Callithrix_jacchus
ENSSMAG00000005463	snrnp200	99	89.641	ENSCAFG00020019979	SNRNP200	99	91.578	Canis_lupus_dingo
ENSSMAG00000005463	snrnp200	99	90.215	ENSCHIG00000020611	SNRNP200	99	90.324	Capra_hircus
ENSSMAG00000005463	snrnp200	99	90.449	ENSTSYG00000010467	SNRNP200	99	90.559	Carlito_syrichta
ENSSMAG00000005463	snrnp200	99	89.892	ENSCAPG00000017234	SNRNP200	99	90.000	Cavia_aperea
ENSSMAG00000005463	snrnp200	99	90.215	ENSCPOG00000006776	SNRNP200	99	90.324	Cavia_porcellus
ENSSMAG00000005463	snrnp200	99	90.356	ENSCCAG00000033962	SNRNP200	99	90.465	Cebus_capucinus
ENSSMAG00000005463	snrnp200	99	90.356	ENSCATG00000015790	SNRNP200	99	90.465	Cercocebus_atys
ENSSMAG00000005463	snrnp200	99	90.262	ENSCLAG00000004116	SNRNP200	99	90.371	Chinchilla_lanigera
ENSSMAG00000005463	snrnp200	99	90.403	ENSCSAG00000017369	SNRNP200	99	90.512	Chlorocebus_sabaeus
ENSSMAG00000005463	snrnp200	75	91.816	ENSCHOG00000012981	-	58	92.913	Choloepus_hoffmanni
ENSSMAG00000005463	snrnp200	99	90.369	ENSCPBG00000022571	SNRNP200	99	90.432	Chrysemys_picta_bellii
ENSSMAG00000005463	snrnp200	99	75.782	ENSCING00000005082	-	99	76.019	Ciona_intestinalis
ENSSMAG00000005463	snrnp200	95	90.173	ENSCANG00000033932	SNRNP200	99	90.210	Colobus_angolensis_palliatus
ENSSMAG00000005463	snrnp200	99	90.356	ENSCGRG00001022610	Snrnp200	99	90.465	Cricetulus_griseus_chok1gshd
ENSSMAG00000005463	snrnp200	99	89.855	ENSCGRG00000016472	Snrnp200	99	89.962	Cricetulus_griseus_crigri
ENSSMAG00000005463	snrnp200	99	96.532	ENSCSEG00000016399	snrnp200	100	96.532	Cynoglossus_semilaevis
ENSSMAG00000005463	snrnp200	100	91.433	ENSCVAG00000017631	snrnp200	100	91.433	Cyprinodon_variegatus
ENSSMAG00000005463	snrnp200	100	94.429	ENSDARG00000077536	snrnp200	99	94.452	Danio_rerio
ENSSMAG00000005463	snrnp200	99	88.998	ENSDNOG00000011227	SNRNP200	99	89.103	Dasypus_novemcinctus
ENSSMAG00000005463	snrnp200	99	87.897	ENSDORG00000005861	Snrnp200	99	87.998	Dipodomys_ordii
ENSSMAG00000005463	snrnp200	100	73.650	FBgn0263599	l(3)72Ab	99	73.876	Drosophila_melanogaster
ENSSMAG00000005463	snrnp200	94	94.231	ENSETEG00000000162	SNRNP200	74	89.836	Echinops_telfairi
ENSSMAG00000005463	snrnp200	83	80.987	ENSEBUG00000016524	snrnp200	95	80.987	Eptatretus_burgeri
ENSSMAG00000005463	snrnp200	99	89.371	ENSEASG00005001884	SNRNP200	99	89.383	Equus_asinus_asinus
ENSSMAG00000005463	snrnp200	99	90.403	ENSECAG00000019675	SNRNP200	99	90.512	Equus_caballus
ENSSMAG00000005463	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSSMAG00000005463	snrnp200	100	96.303	ENSELUG00000018948	snrnp200	100	96.303	Esox_lucius
ENSSMAG00000005463	snrnp200	99	90.449	ENSFCAG00000010699	SNRNP200	99	90.559	Felis_catus
ENSSMAG00000005463	snrnp200	93	85.714	ENSFALG00000001368	-	94	85.714	Ficedula_albicollis
ENSSMAG00000005463	snrnp200	99	90.169	ENSFDAG00000004683	SNRNP200	99	90.277	Fukomys_damarensis
ENSSMAG00000005463	snrnp200	100	94.242	ENSFHEG00000003786	snrnp200	100	94.242	Fundulus_heteroclitus
ENSSMAG00000005463	snrnp200	100	95.280	ENSGMOG00000004881	snrnp200	99	95.167	Gadus_morhua
ENSSMAG00000005463	snrnp200	100	94.195	ENSGAFG00000010807	snrnp200	100	94.195	Gambusia_affinis
ENSSMAG00000005463	snrnp200	100	97.758	ENSGACG00000011474	snrnp200	99	97.758	Gasterosteus_aculeatus
ENSSMAG00000005463	snrnp200	95	92.169	ENSGAGG00000016069	SNRNP200	97	96.774	Gopherus_agassizii
ENSSMAG00000005463	snrnp200	99	90.356	ENSGGOG00000005174	SNRNP200	99	90.465	Gorilla_gorilla
ENSSMAG00000005463	snrnp200	99	94.717	ENSHBUG00000011322	snrnp200	99	94.765	Haplochromis_burtoni
ENSSMAG00000005463	snrnp200	99	90.215	ENSHGLG00000006654	SNRNP200	99	90.324	Heterocephalus_glaber_female
ENSSMAG00000005463	snrnp200	99	90.215	ENSHGLG00100018594	SNRNP200	99	90.324	Heterocephalus_glaber_male
ENSSMAG00000005463	snrnp200	99	90.403	ENSSTOG00000016351	SNRNP200	99	90.512	Ictidomys_tridecemlineatus
ENSSMAG00000005463	snrnp200	99	90.215	ENSJJAG00000023659	Snrnp200	99	90.324	Jaculus_jaculus
ENSSMAG00000005463	snrnp200	100	94.447	ENSKMAG00000003665	snrnp200	100	94.447	Kryptolebias_marmoratus
ENSSMAG00000005463	snrnp200	100	98.642	ENSLBEG00000021585	snrnp200	100	98.642	Labrus_bergylta
ENSSMAG00000005463	snrnp200	82	91.920	ENSLACG00000000226	SNRNP200	99	92.197	Latimeria_chalumnae
ENSSMAG00000005463	snrnp200	100	94.200	ENSLOCG00000015198	snrnp200	99	94.223	Lepisosteus_oculatus
ENSSMAG00000005463	snrnp200	99	90.262	ENSLAFG00000015626	SNRNP200	99	90.371	Loxodonta_africana
ENSSMAG00000005463	snrnp200	99	90.309	ENSMFAG00000040174	SNRNP200	99	91.860	Macaca_fascicularis
ENSSMAG00000005463	snrnp200	99	90.309	ENSMMUG00000023261	SNRNP200	99	90.418	Macaca_mulatta
ENSSMAG00000005463	snrnp200	99	90.262	ENSMNEG00000032398	SNRNP200	99	90.371	Macaca_nemestrina
ENSSMAG00000005463	snrnp200	99	90.356	ENSMLEG00000019083	SNRNP200	99	91.860	Mandrillus_leucophaeus
ENSSMAG00000005463	snrnp200	100	97.099	ENSMAMG00000007851	snrnp200	100	97.099	Mastacembelus_armatus
ENSSMAG00000005463	snrnp200	99	94.717	ENSMZEG00005010787	snrnp200	99	94.765	Maylandia_zebra
ENSSMAG00000005463	snrnp200	98	90.211	ENSMGAG00000001831	SNRNP200	99	90.346	Meleagris_gallopavo
ENSSMAG00000005463	snrnp200	99	90.403	ENSMAUG00000011825	Snrnp200	99	90.512	Mesocricetus_auratus
ENSSMAG00000005463	snrnp200	99	90.403	ENSMICG00000004710	SNRNP200	98	91.549	Microcebus_murinus
ENSSMAG00000005463	snrnp200	99	88.577	ENSMOCG00000011814	Snrnp200	99	88.680	Microtus_ochrogaster
ENSSMAG00000005463	snrnp200	100	95.693	ENSMMOG00000014167	snrnp200	100	95.693	Mola_mola
ENSSMAG00000005463	snrnp200	99	90.309	ENSMODG00000008475	SNRNP200	99	90.371	Monodelphis_domestica
ENSSMAG00000005463	snrnp200	100	97.566	ENSMALG00000001973	snrnp200	100	97.566	Monopterus_albus
ENSSMAG00000005463	snrnp200	99	90.262	MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.371	Mus_caroli
ENSSMAG00000005463	snrnp200	99	90.309	ENSMUSG00000003660	Snrnp200	99	90.418	Mus_musculus
ENSSMAG00000005463	snrnp200	99	90.309	MGP_PahariEiJ_G0025695	Snrnp200	99	90.418	Mus_pahari
ENSSMAG00000005463	snrnp200	99	90.309	MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	Mus_spretus
ENSSMAG00000005463	snrnp200	99	90.449	ENSMPUG00000008949	SNRNP200	99	90.559	Mustela_putorius_furo
ENSSMAG00000005463	snrnp200	99	87.125	ENSMLUG00000027511	-	99	87.224	Myotis_lucifugus
ENSSMAG00000005463	snrnp200	99	89.995	ENSMLUG00000010493	SNRNP200	99	90.103	Myotis_lucifugus
ENSSMAG00000005463	snrnp200	99	90.356	ENSNGAG00000021993	Snrnp200	99	90.465	Nannospalax_galili
ENSSMAG00000005463	snrnp200	92	97.333	ENSNBRG00000017960	snrnp200	98	97.388	Neolamprologus_brichardi
ENSSMAG00000005463	snrnp200	99	86.053	ENSNLEG00000000025	SNRNP200	99	86.241	Nomascus_leucogenys
ENSSMAG00000005463	snrnp200	99	92.784	ENSMEUG00000010532	SNRNP200	78	91.837	Notamacropus_eugenii
ENSSMAG00000005463	snrnp200	97	89.173	ENSOPRG00000015464	SNRNP200	99	87.130	Ochotona_princeps
ENSSMAG00000005463	snrnp200	99	90.215	ENSODEG00000008366	SNRNP200	99	90.324	Octodon_degus
ENSSMAG00000005463	snrnp200	100	97.425	ENSONIG00000010714	snrnp200	100	97.425	Oreochromis_niloticus
ENSSMAG00000005463	snrnp200	99	90.309	ENSOCUG00000009864	SNRNP200	99	90.418	Oryctolagus_cuniculus
ENSSMAG00000005463	snrnp200	99	96.517	ENSORLG00000012286	snrnp200	100	96.490	Oryzias_latipes
ENSSMAG00000005463	snrnp200	99	96.624	ENSORLG00020004648	snrnp200	100	96.485	Oryzias_latipes_hni
ENSSMAG00000005463	snrnp200	99	96.677	ENSORLG00015019114	snrnp200	100	96.553	Oryzias_latipes_hsok
ENSSMAG00000005463	snrnp200	100	96.629	ENSOMEG00000011834	snrnp200	100	96.629	Oryzias_melastigma
ENSSMAG00000005463	snrnp200	99	90.449	ENSOGAG00000006879	SNRNP200	99	90.559	Otolemur_garnettii
ENSSMAG00000005463	snrnp200	99	89.781	ENSOARG00000013949	SNRNP200	99	89.624	Ovis_aries
ENSSMAG00000005463	snrnp200	99	90.356	ENSPPAG00000041559	SNRNP200	99	90.465	Pan_paniscus
ENSSMAG00000005463	snrnp200	99	90.449	ENSPPRG00000004435	SNRNP200	99	90.559	Panthera_pardus
ENSSMAG00000005463	snrnp200	99	90.028	ENSPTIG00000006380	SNRNP200	99	90.136	Panthera_tigris_altaica
ENSSMAG00000005463	snrnp200	99	90.356	ENSPTRG00000012230	SNRNP200	99	90.465	Pan_troglodytes
ENSSMAG00000005463	snrnp200	99	90.309	ENSPANG00000006017	SNRNP200	99	90.418	Papio_anubis
ENSSMAG00000005463	snrnp200	100	94.946	ENSPKIG00000014762	snrnp200	99	95.150	Paramormyrops_kingsleyae
ENSSMAG00000005463	snrnp200	99	89.565	ENSPSIG00000008580	SNRNP200	99	89.624	Pelodiscus_sinensis
ENSSMAG00000005463	snrnp200	99	90.262	ENSPCIG00000023050	SNRNP200	99	90.324	Phascolarctos_cinereus
ENSSMAG00000005463	snrnp200	100	96.537	ENSPFOG00000015110	snrnp200	100	96.537	Poecilia_formosa
ENSSMAG00000005463	snrnp200	98	96.920	ENSPLAG00000006711	snrnp200	99	96.920	Poecilia_latipinna
ENSSMAG00000005463	snrnp200	98	96.755	ENSPMEG00000021166	snrnp200	99	96.755	Poecilia_mexicana
ENSSMAG00000005463	snrnp200	100	96.629	ENSPREG00000008875	snrnp200	100	96.629	Poecilia_reticulata
ENSSMAG00000005463	snrnp200	99	90.356	ENSPPYG00000012068	SNRNP200	99	90.465	Pongo_abelii
ENSSMAG00000005463	snrnp200	97	94.872	ENSPCAG00000008536	SNRNP200	85	95.745	Procavia_capensis
ENSSMAG00000005463	snrnp200	99	90.356	ENSPCOG00000024608	SNRNP200	99	90.465	Propithecus_coquereli
ENSSMAG00000005463	snrnp200	96	90.583	ENSPVAG00000005860	SNRNP200	92	90.825	Pteropus_vampyrus
ENSSMAG00000005463	snrnp200	100	92.577	ENSPNYG00000017476	snrnp200	100	92.577	Pundamilia_nyererei
ENSSMAG00000005463	snrnp200	100	90.688	ENSPNAG00000010998	snrnp200	99	90.742	Pygocentrus_nattereri
ENSSMAG00000005463	snrnp200	99	90.403	ENSRNOG00000012157	Snrnp200	99	90.512	Rattus_norvegicus
ENSSMAG00000005463	snrnp200	99	90.356	ENSRBIG00000044690	-	99	90.465	Rhinopithecus_bieti
ENSSMAG00000005463	snrnp200	99	90.356	ENSRROG00000037952	-	99	90.465	Rhinopithecus_roxellana
ENSSMAG00000005463	snrnp200	99	90.356	ENSSBOG00000035471	SNRNP200	99	90.465	Saimiri_boliviensis_boliviensis
ENSSMAG00000005463	snrnp200	98	90.211	ENSSHAG00000000758	SNRNP200	99	90.200	Sarcophilus_harrisii
ENSSMAG00000005463	snrnp200	99	95.072	ENSSFOG00015018826	snrnp200	99	95.019	Scleropages_formosus
ENSSMAG00000005463	snrnp200	100	98.549	ENSSDUG00000021410	snrnp200	100	98.549	Seriola_dumerili
ENSSMAG00000005463	snrnp200	100	98.408	ENSSLDG00000010884	snrnp200	100	98.408	Seriola_lalandi_dorsalis
ENSSMAG00000005463	snrnp200	95	87.936	ENSSARG00000010728	SNRNP200	96	87.903	Sorex_araneus
ENSSMAG00000005463	snrnp200	99	90.684	ENSSPUG00000003726	-	99	90.747	Sphenodon_punctatus
ENSSMAG00000005463	snrnp200	100	98.596	ENSSPAG00000001842	snrnp200	100	98.596	Stegastes_partitus
ENSSMAG00000005463	snrnp200	99	90.449	ENSSSCG00000008127	SNRNP200	99	90.559	Sus_scrofa
ENSSMAG00000005463	snrnp200	99	82.209	ENSTGUG00000014475	-	100	82.209	Taeniopygia_guttata
ENSSMAG00000005463	snrnp200	100	96.629	ENSTRUG00000001307	snrnp200	100	96.629	Takifugu_rubripes
ENSSMAG00000005463	snrnp200	99	91.751	ENSTNIG00000004320	snrnp200	99	84.287	Tetraodon_nigroviridis
ENSSMAG00000005463	snrnp200	82	92.488	ENSTBEG00000003329	-	67	92.488	Tupaia_belangeri
ENSSMAG00000005463	snrnp200	99	90.215	ENSTTRG00000004983	SNRNP200	99	90.324	Tursiops_truncatus
ENSSMAG00000005463	snrnp200	82	82.773	ENSUAMG00000008395	-	95	83.236	Ursus_americanus
ENSSMAG00000005463	snrnp200	99	90.449	ENSUMAG00000012385	SNRNP200	99	90.559	Ursus_maritimus
ENSSMAG00000005463	snrnp200	87	93.154	ENSVPAG00000006434	SNRNP200	66	93.154	Vicugna_pacos
ENSSMAG00000005463	snrnp200	99	90.310	ENSVVUG00000026247	SNRNP200	99	90.347	Vulpes_vulpes
ENSSMAG00000005463	snrnp200	99	90.225	ENSXETG00000001243	snrnp200	99	90.286	Xenopus_tropicalis
ENSSMAG00000005463	snrnp200	99	96.740	ENSXMAG00000002058	snrnp200	98	96.892	Xiphophorus_maculatus