EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSMAG00000005982 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 14427 bases
Position: chr7:553596-568022
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000009789	La	PF05383.17	1.4e-13	1	1
ENSSMAP00000009836	La	PF05383.17	1.6e-10	1	1
ENSSMAP00000009819	La	PF05383.17	1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000009942	-	1881	-	ENSSMAP00000009819	626 (aa)	-	-
ENSSMAT00000009912	-	2160	-	ENSSMAP00000009789	719 (aa)	-	-
ENSSMAT00000009959	-	636	-	ENSSMAP00000009836	211 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000005982's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000005982's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSMAG00000005982	-	55	65.812	ENSSMAG00000019473	larp4aa	81	38.996
ENSSMAG00000005982	-	61	62.791	ENSSMAG00000002838	larp4ab	86	38.348

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000005982	-	95	62.131	ENSG00000107929	LARP4B	100	52.685	Homo_sapiens
ENSSMAG00000005982	-	93	84.966	ENSAPOG00000020531	LARP4B	94	80.937	Acanthochromis_polyacanthus
ENSSMAG00000005982	-	64	63.704	ENSAPOG00000020631	-	52	68.852	Acanthochromis_polyacanthus
ENSSMAG00000005982	-	99	79.310	ENSAMEG00000001810	LARP4B	83	79.310	Ailuropoda_melanoleuca
ENSSMAG00000005982	-	84	91.133	ENSAOCG00000007887	-	99	80.524	Amphiprion_ocellaris
ENSSMAG00000005982	-	90	100.000	ENSAPEG00000002512	LARP4B	79	100.000	Amphiprion_percula
ENSSMAG00000005982	-	99	100.000	ENSATEG00000012614	LARP4B	83	100.000	Anabas_testudineus
ENSSMAG00000005982	-	99	89.286	ENSAPLG00000003813	LARP4B	79	86.207	Anas_platyrhynchos
ENSSMAG00000005982	-	100	88.889	ENSACAG00000002858	LARP4B	85	88.889	Anolis_carolinensis
ENSSMAG00000005982	-	99	75.862	ENSANAG00000007531	-	82	75.862	Aotus_nancymaae
ENSSMAG00000005982	-	99	100.000	ENSACLG00000026356	LARP4B	86	100.000	Astatotilapia_calliptera
ENSSMAG00000005982	-	94	52.778	ENSAMXG00000003335	larp4b	97	52.222	Astyanax_mexicanus
ENSSMAG00000005982	-	99	75.862	ENSBTAG00000013899	LARP4B	86	74.194	Bos_taurus
ENSSMAG00000005982	-	99	75.862	ENSCJAG00000018434	LARP4B	82	75.862	Callithrix_jacchus
ENSSMAG00000005982	-	99	75.862	ENSCAFG00020004209	LARP4B	82	75.862	Canis_lupus_dingo
ENSSMAG00000005982	-	92	62.628	ENSCHIG00000013543	LARP4B	98	52.542	Capra_hircus
ENSSMAG00000005982	-	95	61.803	ENSTSYG00000002568	LARP4B	97	61.011	Carlito_syrichta
ENSSMAG00000005982	-	95	57.023	ENSCAPG00000009725	LARP4B	84	55.250	Cavia_aperea
ENSSMAG00000005982	-	99	79.310	ENSCPOG00000009375	LARP4B	82	79.310	Cavia_porcellus
ENSSMAG00000005982	-	95	61.967	ENSCCAG00000024869	LARP4B	100	53.627	Cebus_capucinus
ENSSMAG00000005982	-	95	62.131	ENSCATG00000019750	LARP4B	100	53.797	Cercocebus_atys
ENSSMAG00000005982	-	99	82.143	ENSCLAG00000011570	LARP4B	84	82.143	Chinchilla_lanigera
ENSSMAG00000005982	-	69	88.889	ENSCHOG00000007831	-	56	88.889	Choloepus_hoffmanni
ENSSMAG00000005982	-	99	88.889	ENSCPBG00000017063	LARP4B	83	88.889	Chrysemys_picta_bellii
ENSSMAG00000005982	-	95	59.508	ENSCANG00000038021	LARP4B	100	51.995	Colobus_angolensis_palliatus
ENSSMAG00000005982	-	99	75.862	ENSCGRG00001022930	Larp4b	82	75.862	Cricetulus_griseus_chok1gshd
ENSSMAG00000005982	-	99	75.862	ENSCGRG00000006022	Larp4b	82	75.862	Cricetulus_griseus_crigri
ENSSMAG00000005982	-	95	77.722	ENSCSEG00000007342	LARP4B	100	70.451	Cynoglossus_semilaevis
ENSSMAG00000005982	-	55	60.345	ENSCSEG00000001202	-	86	59.690	Cynoglossus_semilaevis
ENSSMAG00000005982	-	99	100.000	ENSCVAG00000008910	LARP4B	83	100.000	Cyprinodon_variegatus
ENSSMAG00000005982	-	95	52.815	ENSDARG00000062146	larp4b	99	53.036	Danio_rerio
ENSSMAG00000005982	-	95	60.492	ENSDNOG00000045543	-	100	61.719	Dasypus_novemcinctus
ENSSMAG00000005982	-	99	79.310	ENSDORG00000009328	Larp4b	82	79.310	Dipodomys_ordii
ENSSMAG00000005982	-	84	68.559	ENSETEG00000011249	LARP4B	90	56.571	Echinops_telfairi
ENSSMAG00000005982	-	95	60.163	ENSEASG00005019068	-	100	52.046	Equus_asinus_asinus
ENSSMAG00000005982	-	95	60.163	ENSECAG00000024040	LARP4B	100	52.302	Equus_caballus
ENSSMAG00000005982	-	88	62.742	ENSEEUG00000008391	LARP4B	98	51.480	Erinaceus_europaeus
ENSSMAG00000005982	-	100	96.296	ENSELUG00000008626	LARP4B	85	96.296	Esox_lucius
ENSSMAG00000005982	-	75	61.635	ENSELUG00000001417	-	94	41.975	Esox_lucius
ENSSMAG00000005982	-	99	75.862	ENSFCAG00000000721	-	82	75.862	Felis_catus
ENSSMAG00000005982	-	99	88.889	ENSFALG00000006961	LARP4B	83	88.889	Ficedula_albicollis
ENSSMAG00000005982	-	99	79.310	ENSFDAG00000006158	LARP4B	79	79.310	Fukomys_damarensis
ENSSMAG00000005982	-	99	96.552	ENSFHEG00000013037	LARP4B	84	96.552	Fundulus_heteroclitus
ENSSMAG00000005982	-	70	53.378	ENSFHEG00000011539	-	59	49.091	Fundulus_heteroclitus
ENSSMAG00000005982	-	82	66.163	ENSGMOG00000010818	-	75	72.705	Gadus_morhua
ENSSMAG00000005982	-	99	88.889	ENSGALG00000006672	LARP4B	83	88.889	Gallus_gallus
ENSSMAG00000005982	-	62	90.000	ENSGAFG00000002038	-	70	77.736	Gambusia_affinis
ENSSMAG00000005982	-	100	93.103	ENSGACG00000017535	LARP4B	81	93.103	Gasterosteus_aculeatus
ENSSMAG00000005982	-	95	63.577	ENSGAGG00000008598	LARP4B	100	54.902	Gopherus_agassizii
ENSSMAG00000005982	-	95	62.603	ENSGGOG00000003572	LARP4B	100	52.956	Gorilla_gorilla
ENSSMAG00000005982	-	99	100.000	ENSHBUG00000007535	LARP4B	86	100.000	Haplochromis_burtoni
ENSSMAG00000005982	-	99	79.310	ENSHGLG00000012936	LARP4B	82	79.310	Heterocephalus_glaber_female
ENSSMAG00000005982	-	67	73.759	ENSHGLG00100017261	-	91	51.195	Heterocephalus_glaber_male
ENSSMAG00000005982	-	99	75.862	ENSHGLG00100016220	-	82	75.862	Heterocephalus_glaber_male
ENSSMAG00000005982	-	99	70.925	ENSHCOG00000011581	LARP4B	89	70.925	Hippocampus_comes
ENSSMAG00000005982	-	94	52.559	ENSIPUG00000009705	larp4b	97	52.216	Ictalurus_punctatus
ENSSMAG00000005982	-	99	79.310	ENSSTOG00000000587	LARP4B	82	79.310	Ictidomys_tridecemlineatus
ENSSMAG00000005982	-	99	79.310	ENSJJAG00000020847	Larp4b	82	79.310	Jaculus_jaculus
ENSSMAG00000005982	-	99	96.296	ENSKMAG00000021674	LARP4B	83	96.296	Kryptolebias_marmoratus
ENSSMAG00000005982	-	71	100.000	ENSLBEG00000025293	-	63	100.000	Labrus_bergylta
ENSSMAG00000005982	-	95	62.871	ENSLACG00000009492	LARP4B	84	63.322	Latimeria_chalumnae
ENSSMAG00000005982	-	99	96.429	ENSLOCG00000012290	larp4b	82	96.296	Lepisosteus_oculatus
ENSSMAG00000005982	-	99	86.207	ENSLAFG00000015334	LARP4B	81	86.207	Loxodonta_africana
ENSSMAG00000005982	-	95	61.803	ENSMFAG00000001766	LARP4B	100	51.995	Macaca_fascicularis
ENSSMAG00000005982	-	95	62.131	ENSMMUG00000005279	LARP4B	100	53.797	Macaca_mulatta
ENSSMAG00000005982	-	95	61.639	ENSMNEG00000014019	LARP4B	100	51.866	Macaca_nemestrina
ENSSMAG00000005982	-	95	62.131	ENSMLEG00000035198	LARP4B	100	54.581	Mandrillus_leucophaeus
ENSSMAG00000005982	-	100	100.000	ENSMAMG00000013742	LARP4B	85	100.000	Mastacembelus_armatus
ENSSMAG00000005982	-	96	78.560	ENSMZEG00005014594	-	100	75.962	Maylandia_zebra
ENSSMAG00000005982	-	100	76.923	ENSMZEG00005006498	-	98	82.730	Maylandia_zebra
ENSSMAG00000005982	-	100	75.000	ENSMGAG00000005472	LARP4B	82	75.000	Meleagris_gallopavo
ENSSMAG00000005982	-	99	79.310	ENSMAUG00000021657	Larp4b	82	79.310	Mesocricetus_auratus
ENSSMAG00000005982	-	95	61.716	ENSMICG00000001301	LARP4B	100	54.605	Microcebus_murinus
ENSSMAG00000005982	-	88	75.862	ENSMOCG00000021452	Larp4b	86	58.234	Microtus_ochrogaster
ENSSMAG00000005982	-	98	79.708	ENSMMOG00000011253	-	88	79.383	Mola_mola
ENSSMAG00000005982	-	100	88.889	ENSMODG00000005957	LARP4B	87	88.889	Monodelphis_domestica
ENSSMAG00000005982	-	98	68.498	ENSMALG00000012432	LARP4B	100	66.162	Monopterus_albus
ENSSMAG00000005982	-	99	75.862	MGP_CAROLIEiJ_G0018216	Larp4b	82	75.862	Mus_caroli
ENSSMAG00000005982	-	99	75.862	ENSMUSG00000033499	Larp4b	100	59.060	Mus_musculus
ENSSMAG00000005982	-	99	75.862	MGP_PahariEiJ_G0019266	Larp4b	100	59.316	Mus_pahari
ENSSMAG00000005982	-	99	75.862	MGP_SPRETEiJ_G0019074	Larp4b	100	59.228	Mus_spretus
ENSSMAG00000005982	-	99	75.862	ENSMPUG00000016220	LARP4B	79	75.862	Mustela_putorius_furo
ENSSMAG00000005982	-	59	88.800	ENSMLUG00000005880	LARP4B	99	51.374	Myotis_lucifugus
ENSSMAG00000005982	-	100	79.310	ENSNGAG00000001750	Larp4b	84	79.310	Nannospalax_galili
ENSSMAG00000005982	-	95	77.311	ENSNBRG00000020018	LARP4B	100	64.103	Neolamprologus_brichardi
ENSSMAG00000005982	-	95	62.459	ENSNLEG00000013442	LARP4B	100	53.925	Nomascus_leucogenys
ENSSMAG00000005982	-	77	88.889	ENSMEUG00000013114	-	64	88.889	Notamacropus_eugenii
ENSSMAG00000005982	-	99	79.310	ENSOPRG00000003300	LARP4B	82	79.310	Ochotona_princeps
ENSSMAG00000005982	-	99	79.310	ENSODEG00000001109	LARP4B	81	79.310	Octodon_degus
ENSSMAG00000005982	-	99	100.000	ENSONIG00000017705	LARP4B	86	100.000	Oreochromis_niloticus
ENSSMAG00000005982	-	100	80.000	ENSOANG00000006100	LARP4B	82	80.000	Ornithorhynchus_anatinus
ENSSMAG00000005982	-	99	75.862	ENSOCUG00000004950	LARP4B	77	75.862	Oryctolagus_cuniculus
ENSSMAG00000005982	-	100	76.886	ENSORLG00000006080	LARP4B	100	70.823	Oryzias_latipes
ENSSMAG00000005982	-	100	75.641	ENSORLG00020020940	LARP4B	100	71.466	Oryzias_latipes_hni
ENSSMAG00000005982	-	100	75.602	ENSORLG00015020608	LARP4B	100	71.035	Oryzias_latipes_hsok
ENSSMAG00000005982	-	100	75.000	ENSOMEG00000019619	LARP4B	100	71.166	Oryzias_melastigma
ENSSMAG00000005982	-	95	60.098	ENSOGAG00000011540	LARP4B	99	52.973	Otolemur_garnettii
ENSSMAG00000005982	-	95	61.248	ENSOARG00000015320	LARP4B	98	51.772	Ovis_aries
ENSSMAG00000005982	-	95	62.295	ENSPPAG00000039232	LARP4B	100	53.213	Pan_paniscus
ENSSMAG00000005982	-	99	75.862	ENSPPRG00000009489	LARP4B	82	75.862	Panthera_pardus
ENSSMAG00000005982	-	99	75.862	ENSPTIG00000008543	LARP4B	82	75.862	Panthera_tigris_altaica
ENSSMAG00000005982	-	95	62.295	ENSPTRG00000002235	LARP4B	100	53.213	Pan_troglodytes
ENSSMAG00000005982	-	95	61.803	ENSPANG00000023546	LARP4B	100	51.995	Papio_anubis
ENSSMAG00000005982	-	97	88.889	ENSPKIG00000012368	LARP4B	81	88.889	Paramormyrops_kingsleyae
ENSSMAG00000005982	-	67	81.897	ENSPSIG00000005600	LARP4B	99	66.216	Pelodiscus_sinensis
ENSSMAG00000005982	-	59	49.194	ENSPMGG00000023487	-	76	47.287	Periophthalmus_magnuspinnatus
ENSSMAG00000005982	-	97	86.667	ENSPMGG00000008261	LARP4B	76	86.667	Periophthalmus_magnuspinnatus
ENSSMAG00000005982	-	99	79.310	ENSPEMG00000014052	Larp4b	82	79.310	Peromyscus_maniculatus_bairdii
ENSSMAG00000005982	-	99	100.000	ENSPFOG00000000029	LARP4B	84	100.000	Poecilia_formosa
ENSSMAG00000005982	-	99	100.000	ENSPLAG00000002871	LARP4B	88	100.000	Poecilia_latipinna
ENSSMAG00000005982	-	99	100.000	ENSPMEG00000016361	LARP4B	84	100.000	Poecilia_mexicana
ENSSMAG00000005982	-	99	72.414	ENSPPYG00000002035	LARP4B	97	53.145	Pongo_abelii
ENSSMAG00000005982	-	95	62.046	ENSPCOG00000014688	LARP4B	100	53.145	Propithecus_coquereli
ENSSMAG00000005982	-	95	56.260	ENSPVAG00000009784	LARP4B	83	55.680	Pteropus_vampyrus
ENSSMAG00000005982	-	99	100.000	ENSPNYG00000024252	LARP4B	86	100.000	Pundamilia_nyererei
ENSSMAG00000005982	-	94	52.817	ENSPNAG00000028956	larp4b	96	52.609	Pygocentrus_nattereri
ENSSMAG00000005982	-	99	75.862	ENSRNOG00000015888	Larp4b	82	75.862	Rattus_norvegicus
ENSSMAG00000005982	-	95	61.803	ENSRBIG00000033294	LARP4B	100	53.668	Rhinopithecus_bieti
ENSSMAG00000005982	-	95	62.131	ENSRROG00000033879	LARP4B	100	53.668	Rhinopithecus_roxellana
ENSSMAG00000005982	-	95	56.557	ENSSBOG00000021109	LARP4B	100	49.612	Saimiri_boliviensis_boliviensis
ENSSMAG00000005982	-	99	88.889	ENSSHAG00000013392	LARP4B	84	88.889	Sarcophilus_harrisii
ENSSMAG00000005982	-	91	92.593	ENSSFOG00015003256	LARP4B	78	92.593	Scleropages_formosus
ENSSMAG00000005982	-	100	100.000	ENSSDUG00000006704	LARP4B	86	100.000	Seriola_dumerili
ENSSMAG00000005982	-	100	81.306	ENSSLDG00000020660	LARP4B	100	81.306	Seriola_lalandi_dorsalis
ENSSMAG00000005982	-	74	85.393	ENSSARG00000001243	-	79	84.112	Sorex_araneus
ENSSMAG00000005982	-	100	59.031	ENSSPUG00000013734	-	100	63.333	Sphenodon_punctatus
ENSSMAG00000005982	-	99	88.889	ENSSPUG00000002102	-	90	88.889	Sphenodon_punctatus
ENSSMAG00000005982	-	96	84.783	ENSSPAG00000014628	LARP4B	100	71.956	Stegastes_partitus
ENSSMAG00000005982	-	95	62.562	ENSSSCG00000011162	LARP4B	96	58.814	Sus_scrofa
ENSSMAG00000005982	-	59	90.400	ENSTGUG00000013982	-	100	92.537	Taeniopygia_guttata
ENSSMAG00000005982	-	99	83.333	ENSTGUG00000000811	-	84	83.333	Taeniopygia_guttata
ENSSMAG00000005982	-	99	89.286	ENSTNIG00000007991	LARP4B	84	92.593	Tetraodon_nigroviridis
ENSSMAG00000005982	-	99	89.286	ENSTNIG00000004571	-	83	89.286	Tetraodon_nigroviridis
ENSSMAG00000005982	-	59	86.400	ENSTTRG00000011151	LARP4B	80	58.857	Tursiops_truncatus
ENSSMAG00000005982	-	82	75.862	ENSUAMG00000016461	LARP4B	75	75.862	Ursus_americanus
ENSSMAG00000005982	-	95	61.905	ENSUMAG00000016127	LARP4B	100	53.153	Ursus_maritimus
ENSSMAG00000005982	-	59	84.800	ENSVPAG00000000128	-	64	85.475	Vicugna_pacos
ENSSMAG00000005982	-	99	75.862	ENSVVUG00000008641	LARP4B	83	75.862	Vulpes_vulpes
ENSSMAG00000005982	-	96	92.593	ENSXETG00000016882	larp4b	80	92.593	Xenopus_tropicalis
ENSSMAG00000005982	-	100	96.552	ENSXCOG00000019952	LARP4B	87	96.552	Xiphophorus_couchianus
ENSSMAG00000005982	-	99	100.000	ENSXMAG00000021533	LARP4B	84	100.000	Xiphophorus_maculatus