EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000006067 (Gene tree)
Gene ID: -
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 13699 bases
Position: chr7:659762-673460
Accession: ZDB-GENE-030131-9122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000010066	EST1	PF10374.9	1.9e-26	1	1
ENSSMAP00000010011	EST1	PF10374.9	2.1e-26	1	1
ENSSMAP00000009950	EST1	PF10374.9	2.4e-26	1	1
ENSSMAP00000010011	EST1_DNA_bind	PF10373.9	6.6e-49	1	1
ENSSMAP00000009950	EST1_DNA_bind	PF10373.9	7.4e-49	1	1
ENSSMAP00000010066	EST1_DNA_bind	PF10373.9	1.4e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000010076	-	6586	-	ENSSMAP00000009950	1167 (aa)	-	-
ENSSMAT00000010196	-	3213	-	ENSSMAP00000010066	1070 (aa)	-	-
ENSSMAT00000010141	-	6436	-	ENSSMAP00000010011	1117 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000006067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000006067's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000006067	smg7	99	65.978	ENSG00000116698	SMG7	88	93.168	Homo_sapiens
ENSSMAG00000006067	smg7	90	91.236	ENSAPOG00000009611	smg7	95	91.085	Acanthochromis_polyacanthus
ENSSMAG00000006067	smg7	99	65.946	ENSAMEG00000002357	SMG7	100	65.329	Ailuropoda_melanoleuca
ENSSMAG00000006067	smg7	100	81.851	ENSACIG00000015152	smg7	100	82.821	Amphilophus_citrinellus
ENSSMAG00000006067	smg7	100	87.719	ENSAOCG00000013538	smg7	100	88.133	Amphiprion_ocellaris
ENSSMAG00000006067	smg7	100	87.229	ENSAPEG00000007851	smg7	100	87.636	Amphiprion_percula
ENSSMAG00000006067	smg7	100	86.458	ENSATEG00000006931	smg7	100	85.838	Anabas_testudineus
ENSSMAG00000006067	smg7	99	65.090	ENSAPLG00000015811	SMG7	99	64.477	Anas_platyrhynchos
ENSSMAG00000006067	smg7	99	64.996	ENSACAG00000014989	SMG7	99	64.803	Anolis_carolinensis
ENSSMAG00000006067	smg7	99	66.116	ENSANAG00000028114	SMG7	85	92.994	Aotus_nancymaae
ENSSMAG00000006067	smg7	100	86.326	ENSACLG00000022079	smg7	100	85.185	Astatotilapia_calliptera
ENSSMAG00000006067	smg7	100	76.421	ENSAMXG00000020809	smg7	100	75.983	Astyanax_mexicanus
ENSSMAG00000006067	smg7	99	65.891	ENSBTAG00000008003	SMG7	99	65.746	Bos_taurus
ENSSMAG00000006067	smg7	99	65.862	ENSCJAG00000005135	SMG7	86	92.994	Callithrix_jacchus
ENSSMAG00000006067	smg7	99	64.652	ENSCAFG00000013276	SMG7	97	64.594	Canis_familiaris
ENSSMAG00000006067	smg7	99	65.844	ENSCAFG00020015475	SMG7	89	90.244	Canis_lupus_dingo
ENSSMAG00000006067	smg7	100	64.516	ENSCHIG00000018192	SMG7	99	64.374	Capra_hircus
ENSSMAG00000006067	smg7	99	65.633	ENSTSYG00000002667	SMG7	80	94.194	Carlito_syrichta
ENSSMAG00000006067	smg7	99	64.380	ENSCPOG00000008906	SMG7	99	63.583	Cavia_porcellus
ENSSMAG00000006067	smg7	99	66.207	ENSCCAG00000028596	SMG7	85	92.994	Cebus_capucinus
ENSSMAG00000006067	smg7	99	66.064	ENSCATG00000011063	SMG7	85	92.994	Cercocebus_atys
ENSSMAG00000006067	smg7	99	65.722	ENSCLAG00000010751	SMG7	99	65.919	Chinchilla_lanigera
ENSSMAG00000006067	smg7	99	64.764	ENSCSAG00000012654	SMG7	97	64.789	Chlorocebus_sabaeus
ENSSMAG00000006067	smg7	95	59.839	ENSCHOG00000010522	SMG7	93	57.194	Choloepus_hoffmanni
ENSSMAG00000006067	smg7	99	66.777	ENSCPBG00000015724	SMG7	99	66.557	Chrysemys_picta_bellii
ENSSMAG00000006067	smg7	99	65.946	ENSCANG00000015680	SMG7	85	92.994	Colobus_angolensis_palliatus
ENSSMAG00000006067	smg7	99	65.060	ENSCGRG00001013705	Smg7	99	65.086	Cricetulus_griseus_chok1gshd
ENSSMAG00000006067	smg7	100	63.911	ENSCGRG00000018401	Smg7	100	64.935	Cricetulus_griseus_crigri
ENSSMAG00000006067	smg7	93	86.700	ENSCVAG00000011842	smg7	100	86.700	Cyprinodon_variegatus
ENSSMAG00000006067	smg7	100	75.920	ENSDARG00000060767	smg7	100	75.689	Danio_rerio
ENSSMAG00000006067	smg7	99	64.232	ENSDORG00000007331	Smg7	99	64.256	Dipodomys_ordii
ENSSMAG00000006067	smg7	96	63.621	ENSETEG00000002654	SMG7	99	63.668	Echinops_telfairi
ENSSMAG00000006067	smg7	99	64.925	ENSEASG00005006524	SMG7	99	64.950	Equus_asinus_asinus
ENSSMAG00000006067	smg7	93	89.037	ENSECAG00000004313	SMG7	97	87.574	Equus_caballus
ENSSMAG00000006067	smg7	96	63.846	ENSEEUG00000002024	SMG7	94	63.699	Erinaceus_europaeus
ENSSMAG00000006067	smg7	100	78.816	ENSELUG00000010293	smg7	100	78.482	Esox_lucius
ENSSMAG00000006067	smg7	99	65.311	ENSFCAG00000010900	SMG7	99	69.712	Felis_catus
ENSSMAG00000006067	smg7	94	70.500	ENSFALG00000003047	SMG7	100	64.726	Ficedula_albicollis
ENSSMAG00000006067	smg7	99	64.422	ENSFDAG00000012121	SMG7	99	64.202	Fukomys_damarensis
ENSSMAG00000006067	smg7	100	81.588	ENSFHEG00000011073	smg7	100	81.381	Fundulus_heteroclitus
ENSSMAG00000006067	smg7	89	80.899	ENSGMOG00000004916	smg7	90	80.899	Gadus_morhua
ENSSMAG00000006067	smg7	99	65.749	ENSGALG00000004667	SMG7	99	64.914	Gallus_gallus
ENSSMAG00000006067	smg7	100	81.239	ENSGAFG00000019000	smg7	100	80.349	Gambusia_affinis
ENSSMAG00000006067	smg7	97	83.228	ENSGACG00000001634	smg7	99	82.852	Gasterosteus_aculeatus
ENSSMAG00000006067	smg7	99	65.978	ENSGGOG00000002342	SMG7	82	91.875	Gorilla_gorilla
ENSSMAG00000006067	smg7	100	86.421	ENSHBUG00000003726	smg7	100	85.269	Haplochromis_burtoni
ENSSMAG00000006067	smg7	99	65.891	ENSHGLG00000009353	SMG7	99	65.919	Heterocephalus_glaber_female
ENSSMAG00000006067	smg7	99	59.038	ENSHGLG00100004878	-	99	58.624	Heterocephalus_glaber_male
ENSSMAG00000006067	smg7	99	65.805	ENSHGLG00100009637	-	99	65.833	Heterocephalus_glaber_male
ENSSMAG00000006067	smg7	100	75.524	ENSIPUG00000016997	smg7	100	75.337	Ictalurus_punctatus
ENSSMAG00000006067	smg7	99	65.008	ENSSTOG00000000401	SMG7	99	64.867	Ictidomys_tridecemlineatus
ENSSMAG00000006067	smg7	99	64.867	ENSJJAG00000012351	Smg7	99	64.725	Jaculus_jaculus
ENSSMAG00000006067	smg7	100	76.965	ENSKMAG00000004900	smg7	100	79.155	Kryptolebias_marmoratus
ENSSMAG00000006067	smg7	99	85.312	ENSLBEG00000002983	smg7	99	85.664	Labrus_bergylta
ENSSMAG00000006067	smg7	56	77.722	ENSLBEG00000005220	-	75	77.722	Labrus_bergylta
ENSSMAG00000006067	smg7	98	70.051	ENSLACG00000000972	SMG7	100	67.731	Latimeria_chalumnae
ENSSMAG00000006067	smg7	99	70.355	ENSLOCG00000002010	smg7	99	69.752	Lepisosteus_oculatus
ENSSMAG00000006067	smg7	99	64.226	ENSLAFG00000008186	SMG7	99	64.250	Loxodonta_africana
ENSSMAG00000006067	smg7	99	65.091	ENSMFAG00000031653	SMG7	85	92.994	Macaca_fascicularis
ENSSMAG00000006067	smg7	100	64.769	ENSMMUG00000018458	SMG7	99	65.423	Macaca_mulatta
ENSSMAG00000006067	smg7	99	66.064	ENSMNEG00000034798	SMG7	85	92.994	Macaca_nemestrina
ENSSMAG00000006067	smg7	99	66.064	ENSMLEG00000037170	SMG7	100	65.444	Mandrillus_leucophaeus
ENSSMAG00000006067	smg7	88	83.648	ENSMAMG00000018733	smg7	86	84.011	Mastacembelus_armatus
ENSSMAG00000006067	smg7	100	86.577	ENSMZEG00005015247	smg7	100	84.848	Maylandia_zebra
ENSSMAG00000006067	smg7	99	64.935	ENSMGAG00000001561	SMG7	99	65.048	Meleagris_gallopavo
ENSSMAG00000006067	smg7	99	64.580	ENSMAUG00000019484	Smg7	99	64.519	Mesocricetus_auratus
ENSSMAG00000006067	smg7	100	65.361	ENSMICG00000007145	SMG7	81	94.194	Microcebus_murinus
ENSSMAG00000006067	smg7	99	64.686	ENSMOCG00000020748	Smg7	99	64.538	Microtus_ochrogaster
ENSSMAG00000006067	smg7	100	80.616	ENSMMOG00000001524	smg7	99	81.152	Mola_mola
ENSSMAG00000006067	smg7	92	65.150	ENSMODG00000007139	SMG7	99	65.456	Monodelphis_domestica
ENSSMAG00000006067	smg7	100	86.831	ENSMALG00000000061	smg7	94	87.121	Monopterus_albus
ENSSMAG00000006067	smg7	99	65.056	MGP_CAROLIEiJ_G0014704	Smg7	99	64.391	Mus_caroli
ENSSMAG00000006067	smg7	99	64.858	ENSMUSG00000042772	Smg7	99	64.797	Mus_musculus
ENSSMAG00000006067	smg7	99	65.202	MGP_PahariEiJ_G0027940	Smg7	99	65.142	Mus_pahari
ENSSMAG00000006067	smg7	99	64.944	MGP_SPRETEiJ_G0015511	Smg7	99	64.884	Mus_spretus
ENSSMAG00000006067	smg7	98	64.736	ENSMPUG00000011732	SMG7	97	64.340	Mustela_putorius_furo
ENSSMAG00000006067	smg7	99	64.339	ENSMLUG00000015417	SMG7	99	64.363	Myotis_lucifugus
ENSSMAG00000006067	smg7	100	65.837	ENSNGAG00000009836	Smg7	100	65.090	Nannospalax_galili
ENSSMAG00000006067	smg7	100	78.824	ENSNBRG00000024343	smg7	99	78.667	Neolamprologus_brichardi
ENSSMAG00000006067	smg7	99	66.150	ENSNLEG00000018018	SMG7	100	65.529	Nomascus_leucogenys
ENSSMAG00000006067	smg7	70	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSSMAG00000006067	smg7	96	59.931	ENSOPRG00000013942	SMG7	96	59.462	Ochotona_princeps
ENSSMAG00000006067	smg7	99	65.547	ENSODEG00000010390	SMG7	99	64.711	Octodon_degus
ENSSMAG00000006067	smg7	100	86.038	ENSONIG00000000277	smg7	100	84.676	Oreochromis_niloticus
ENSSMAG00000006067	smg7	99	63.783	ENSOANG00000000994	SMG7	100	63.423	Ornithorhynchus_anatinus
ENSSMAG00000006067	smg7	99	62.698	ENSOCUG00000005887	SMG7	92	62.948	Oryctolagus_cuniculus
ENSSMAG00000006067	smg7	100	80.102	ENSORLG00000007314	smg7	100	79.661	Oryzias_latipes
ENSSMAG00000006067	smg7	98	83.333	ENSORLG00020015779	smg7	100	80.169	Oryzias_latipes_hni
ENSSMAG00000006067	smg7	98	83.333	ENSORLG00015012289	smg7	100	79.915	Oryzias_latipes_hsok
ENSSMAG00000006067	smg7	100	80.948	ENSOMEG00000002328	smg7	100	80.424	Oryzias_melastigma
ENSSMAG00000006067	smg7	96	64.182	ENSOGAG00000003107	SMG7	93	63.262	Otolemur_garnettii
ENSSMAG00000006067	smg7	99	64.570	ENSOARG00000001352	SMG7	100	64.298	Ovis_aries
ENSSMAG00000006067	smg7	99	66.150	ENSPPAG00000031619	SMG7	90	89.697	Pan_paniscus
ENSSMAG00000006067	smg7	99	66.552	ENSPPRG00000011222	SMG7	99	66.494	Panthera_pardus
ENSSMAG00000006067	smg7	96	65.814	ENSPTIG00000007242	SMG7	100	65.756	Panthera_tigris_altaica
ENSSMAG00000006067	smg7	99	66.150	ENSPTRG00000001764	SMG7	85	92.994	Pan_troglodytes
ENSSMAG00000006067	smg7	99	66.064	ENSPANG00000004520	SMG7	99	66.091	Papio_anubis
ENSSMAG00000006067	smg7	100	70.816	ENSPKIG00000007242	smg7	100	70.286	Paramormyrops_kingsleyae
ENSSMAG00000006067	smg7	100	64.450	ENSPSIG00000012201	SMG7	100	65.153	Pelodiscus_sinensis
ENSSMAG00000006067	smg7	73	50.864	ENSPMGG00000021833	smg7	97	51.059	Periophthalmus_magnuspinnatus
ENSSMAG00000006067	smg7	99	64.583	ENSPEMG00000011315	Smg7	99	64.435	Peromyscus_maniculatus_bairdii
ENSSMAG00000006067	smg7	99	66.336	ENSPCIG00000003786	SMG7	89	93.750	Phascolarctos_cinereus
ENSSMAG00000006067	smg7	100	81.339	ENSPFOG00000019219	smg7	100	82.496	Poecilia_formosa
ENSSMAG00000006067	smg7	100	81.397	ENSPLAG00000001446	smg7	100	82.605	Poecilia_latipinna
ENSSMAG00000006067	smg7	97	80.776	ENSPMEG00000005218	smg7	99	82.023	Poecilia_mexicana
ENSSMAG00000006067	smg7	87	79.267	ENSPREG00000019039	smg7	92	78.261	Poecilia_reticulata
ENSSMAG00000006067	smg7	99	66.150	ENSPPYG00000000427	SMG7	99	66.178	Pongo_abelii
ENSSMAG00000006067	smg7	87	71.493	ENSPCAG00000008360	SMG7	86	72.271	Procavia_capensis
ENSSMAG00000006067	smg7	99	65.195	ENSPCOG00000011996	SMG7	76	94.194	Propithecus_coquereli
ENSSMAG00000006067	smg7	91	60.488	ENSPVAG00000000851	SMG7	89	60.507	Pteropus_vampyrus
ENSSMAG00000006067	smg7	100	86.242	ENSPNYG00000007643	smg7	100	85.173	Pundamilia_nyererei
ENSSMAG00000006067	smg7	100	76.353	ENSPNAG00000011374	smg7	100	75.770	Pygocentrus_nattereri
ENSSMAG00000006067	smg7	99	65.232	ENSRNOG00000027962	Smg7	100	64.621	Rattus_norvegicus
ENSSMAG00000006067	smg7	99	66.064	ENSRBIG00000036316	SMG7	100	65.444	Rhinopithecus_bieti
ENSSMAG00000006067	smg7	99	66.064	ENSRROG00000035719	SMG7	100	65.444	Rhinopithecus_roxellana
ENSSMAG00000006067	smg7	99	64.979	ENSSBOG00000023454	SMG7	88	93.168	Saimiri_boliviensis_boliviensis
ENSSMAG00000006067	smg7	100	65.262	ENSSHAG00000013147	SMG7	99	64.767	Sarcophilus_harrisii
ENSSMAG00000006067	smg7	100	73.261	ENSSFOG00015017252	smg7	100	72.819	Scleropages_formosus
ENSSMAG00000006067	smg7	65	92.700	ENSSDUG00000017543	smg7	100	87.619	Seriola_dumerili
ENSSMAG00000006067	smg7	100	64.324	ENSSPUG00000002064	SMG7	99	65.030	Sphenodon_punctatus
ENSSMAG00000006067	smg7	100	85.353	ENSSPAG00000008733	smg7	99	85.237	Stegastes_partitus
ENSSMAG00000006067	smg7	99	64.925	ENSSSCG00000015558	SMG7	99	64.950	Sus_scrofa
ENSSMAG00000006067	smg7	99	65.744	ENSTGUG00000003928	SMG7	100	65.858	Taeniopygia_guttata
ENSSMAG00000006067	smg7	100	74.608	ENSTNIG00000002802	smg7	100	73.036	Tetraodon_nigroviridis
ENSSMAG00000006067	smg7	79	68.000	ENSTBEG00000003220	SMG7	69	68.000	Tupaia_belangeri
ENSSMAG00000006067	smg7	96	64.034	ENSTTRG00000014778	SMG7	94	64.058	Tursiops_truncatus
ENSSMAG00000006067	smg7	99	63.432	ENSUAMG00000017473	SMG7	100	63.889	Ursus_americanus
ENSSMAG00000006067	smg7	99	63.432	ENSUMAG00000016389	SMG7	100	64.151	Ursus_maritimus
ENSSMAG00000006067	smg7	99	65.062	ENSVVUG00000008976	SMG7	99	65.004	Vulpes_vulpes
ENSSMAG00000006067	smg7	99	59.830	ENSXETG00000012528	smg7	99	59.297	Xenopus_tropicalis
ENSSMAG00000006067	smg7	100	81.031	ENSXMAG00000007123	smg7	100	80.823	Xiphophorus_maculatus