EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSMAG00000006374 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Scophthalmus_maximus
Status: putative
Strand: Plus strand
Length: 3774 bases
Position: chr19:6542887-6546660
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSMAP00000010376	zf-CCCH	PF00642.24	4.5e-23	1	2
ENSSMAP00000010376	zf-CCCH	PF00642.24	4.5e-23	2	2
ENSSMAP00000010376	zf-CCHC	PF00098.23	4.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSMAT00000010508	-	735	-	ENSSMAP00000010376	244 (aa)	-	-

Gene Model

Click here to download ENSSMAG00000006374's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSMAG00000006374's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSMAG00000006374	cpsf4	100	86.235	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSSMAG00000006374	cpsf4	64	71.910	ENSAPOG00000004921	cpsf4	100	71.910	Acanthochromis_polyacanthus
ENSSMAG00000006374	cpsf4	100	77.695	ENSAMEG00000006252	CPSF4	100	79.182	Ailuropoda_melanoleuca
ENSSMAG00000006374	cpsf4	100	90.164	ENSACIG00000009248	cpsf4	100	90.164	Amphilophus_citrinellus
ENSSMAG00000006374	cpsf4	100	83.083	ENSAOCG00000019616	cpsf4	100	83.083	Amphiprion_ocellaris
ENSSMAG00000006374	cpsf4	100	83.083	ENSAPEG00000011679	cpsf4	100	83.083	Amphiprion_percula
ENSSMAG00000006374	cpsf4	100	90.688	ENSATEG00000007010	cpsf4	100	90.688	Anabas_testudineus
ENSSMAG00000006374	cpsf4	100	75.465	ENSACAG00000012941	CPSF4	89	76.296	Anolis_carolinensis
ENSSMAG00000006374	cpsf4	100	77.695	ENSANAG00000021360	CPSF4	100	79.554	Aotus_nancymaae
ENSSMAG00000006374	cpsf4	100	85.306	ENSACLG00000010374	cpsf4	100	85.306	Astatotilapia_calliptera
ENSSMAG00000006374	cpsf4	100	79.259	ENSAMXG00000031647	cpsf4	100	79.630	Astyanax_mexicanus
ENSSMAG00000006374	cpsf4	100	86.235	ENSBTAG00000002090	CPSF4	100	86.235	Bos_taurus
ENSSMAG00000006374	cpsf4	100	77.736	ENSCJAG00000015826	CPSF4	100	79.554	Callithrix_jacchus
ENSSMAG00000006374	cpsf4	100	77.695	ENSCAFG00000015036	CPSF4	99	86.228	Canis_familiaris
ENSSMAG00000006374	cpsf4	100	72.862	ENSCAFG00020014462	CPSF4	100	74.349	Canis_lupus_dingo
ENSSMAG00000006374	cpsf4	100	77.323	ENSCHIG00000014313	CPSF4	100	79.182	Capra_hircus
ENSSMAG00000006374	cpsf4	88	80.645	ENSTSYG00000008195	-	99	80.531	Carlito_syrichta
ENSSMAG00000006374	cpsf4	100	86.640	ENSTSYG00000005712	-	100	86.640	Carlito_syrichta
ENSSMAG00000006374	cpsf4	100	78.455	ENSTSYG00000014604	-	100	78.455	Carlito_syrichta
ENSSMAG00000006374	cpsf4	81	74.775	ENSCAPG00000013881	CPSF4	88	76.577	Cavia_aperea
ENSSMAG00000006374	cpsf4	100	86.122	ENSCPOG00000001783	CPSF4	100	86.122	Cavia_porcellus
ENSSMAG00000006374	cpsf4	100	77.695	ENSCCAG00000028291	CPSF4	100	79.554	Cebus_capucinus
ENSSMAG00000006374	cpsf4	100	80.894	ENSCATG00000038440	CPSF4	100	80.894	Cercocebus_atys
ENSSMAG00000006374	cpsf4	100	77.695	ENSCLAG00000007050	CPSF4	100	79.182	Chinchilla_lanigera
ENSSMAG00000006374	cpsf4	100	77.695	ENSCSAG00000017795	CPSF4	100	79.554	Chlorocebus_sabaeus
ENSSMAG00000006374	cpsf4	78	75.000	ENSCPBG00000020869	CPSF4	100	77.315	Chrysemys_picta_bellii
ENSSMAG00000006374	cpsf4	68	77.108	ENSCPBG00000010269	-	100	77.108	Chrysemys_picta_bellii
ENSSMAG00000006374	cpsf4	96	56.031	ENSCING00000021080	-	97	56.250	Ciona_intestinalis
ENSSMAG00000006374	cpsf4	96	53.004	ENSCSAVG00000011469	-	97	53.004	Ciona_savignyi
ENSSMAG00000006374	cpsf4	100	80.894	ENSCANG00000019384	CPSF4	100	80.894	Colobus_angolensis_palliatus
ENSSMAG00000006374	cpsf4	100	86.122	ENSCGRG00001024184	Cpsf4	100	86.122	Cricetulus_griseus_chok1gshd
ENSSMAG00000006374	cpsf4	100	77.695	ENSCGRG00000013892	Cpsf4	100	79.182	Cricetulus_griseus_crigri
ENSSMAG00000006374	cpsf4	100	84.211	ENSCSEG00000019055	cpsf4	100	84.211	Cynoglossus_semilaevis
ENSSMAG00000006374	cpsf4	100	83.459	ENSCVAG00000016528	cpsf4	100	83.459	Cyprinodon_variegatus
ENSSMAG00000006374	cpsf4	100	80.074	ENSDARG00000020217	cpsf4	100	80.882	Danio_rerio
ENSSMAG00000006374	cpsf4	100	77.695	ENSDNOG00000006344	CPSF4	100	79.554	Dasypus_novemcinctus
ENSSMAG00000006374	cpsf4	79	75.576	ENSDORG00000000742	Cpsf4	100	77.419	Dipodomys_ordii
ENSSMAG00000006374	cpsf4	100	52.843	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSSMAG00000006374	cpsf4	77	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSSMAG00000006374	cpsf4	99	69.421	ENSEBUG00000012552	cpsf4	98	69.421	Eptatretus_burgeri
ENSSMAG00000006374	cpsf4	100	86.122	ENSEASG00005002487	CPSF4	100	86.122	Equus_asinus_asinus
ENSSMAG00000006374	cpsf4	100	77.695	ENSECAG00000007525	CPSF4	100	79.182	Equus_caballus
ENSSMAG00000006374	cpsf4	59	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSSMAG00000006374	cpsf4	100	79.412	ENSELUG00000011481	cpsf4	100	79.412	Esox_lucius
ENSSMAG00000006374	cpsf4	100	77.695	ENSFCAG00000015070	CPSF4	100	79.182	Felis_catus
ENSSMAG00000006374	cpsf4	68	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSSMAG00000006374	cpsf4	100	85.830	ENSFALG00000013799	CPSF4	100	85.830	Ficedula_albicollis
ENSSMAG00000006374	cpsf4	89	76.132	ENSFDAG00000014092	CPSF4	100	77.778	Fukomys_damarensis
ENSSMAG00000006374	cpsf4	100	83.083	ENSFHEG00000010880	cpsf4	100	83.083	Fundulus_heteroclitus
ENSSMAG00000006374	cpsf4	100	84.733	ENSGMOG00000002330	cpsf4	100	84.733	Gadus_morhua
ENSSMAG00000006374	cpsf4	100	86.640	ENSGALG00000004714	CPSF4	100	86.640	Gallus_gallus
ENSSMAG00000006374	cpsf4	65	35.393	ENSGALG00000004441	-	92	35.393	Gallus_gallus
ENSSMAG00000006374	cpsf4	100	84.151	ENSGAFG00000010580	cpsf4	100	84.151	Gambusia_affinis
ENSSMAG00000006374	cpsf4	100	88.583	ENSGACG00000007792	cpsf4	100	88.583	Gasterosteus_aculeatus
ENSSMAG00000006374	cpsf4	68	77.576	ENSGAGG00000020579	-	92	77.576	Gopherus_agassizii
ENSSMAG00000006374	cpsf4	100	77.695	ENSGAGG00000021835	CPSF4	100	79.554	Gopherus_agassizii
ENSSMAG00000006374	cpsf4	100	77.695	ENSGGOG00000015131	CPSF4	100	79.554	Gorilla_gorilla
ENSSMAG00000006374	cpsf4	100	84.962	ENSHBUG00000013699	cpsf4	100	84.962	Haplochromis_burtoni
ENSSMAG00000006374	cpsf4	100	77.122	ENSHGLG00000017150	CPSF4	100	78.229	Heterocephalus_glaber_female
ENSSMAG00000006374	cpsf4	86	73.729	ENSHGLG00100009215	-	100	75.000	Heterocephalus_glaber_male
ENSSMAG00000006374	cpsf4	100	55.328	ENSHGLG00100017302	-	100	55.738	Heterocephalus_glaber_male
ENSSMAG00000006374	cpsf4	100	86.038	ENSHCOG00000004397	cpsf4	100	86.038	Hippocampus_comes
ENSSMAG00000006374	cpsf4	100	78.598	ENSIPUG00000017147	cpsf4	100	79.336	Ictalurus_punctatus
ENSSMAG00000006374	cpsf4	100	86.531	ENSSTOG00000001688	CPSF4	100	86.531	Ictidomys_tridecemlineatus
ENSSMAG00000006374	cpsf4	100	77.695	ENSJJAG00000019426	Cpsf4	100	79.182	Jaculus_jaculus
ENSSMAG00000006374	cpsf4	100	82.707	ENSKMAG00000015642	cpsf4	100	82.707	Kryptolebias_marmoratus
ENSSMAG00000006374	cpsf4	100	62.857	ENSLACG00000018470	-	100	62.857	Latimeria_chalumnae
ENSSMAG00000006374	cpsf4	100	78.148	ENSLACG00000010938	CPSF4	100	78.148	Latimeria_chalumnae
ENSSMAG00000006374	cpsf4	100	76.580	ENSLOCG00000004814	cpsf4	100	78.810	Lepisosteus_oculatus
ENSSMAG00000006374	cpsf4	100	78.067	ENSLAFG00000000159	CPSF4	100	79.554	Loxodonta_africana
ENSSMAG00000006374	cpsf4	100	80.894	ENSMFAG00000001462	CPSF4	100	86.598	Macaca_fascicularis
ENSSMAG00000006374	cpsf4	100	77.695	ENSMMUG00000019191	CPSF4	100	79.554	Macaca_mulatta
ENSSMAG00000006374	cpsf4	100	80.894	ENSMNEG00000032306	CPSF4	100	80.894	Macaca_nemestrina
ENSSMAG00000006374	cpsf4	100	80.894	ENSMLEG00000034721	CPSF4	100	80.894	Mandrillus_leucophaeus
ENSSMAG00000006374	cpsf4	100	83.459	ENSMAMG00000006244	cpsf4	100	83.459	Mastacembelus_armatus
ENSSMAG00000006374	cpsf4	100	84.962	ENSMZEG00005007515	cpsf4	100	84.962	Maylandia_zebra
ENSSMAG00000006374	cpsf4	86	85.915	ENSMGAG00000004235	CPSF4	100	85.915	Meleagris_gallopavo
ENSSMAG00000006374	cpsf4	100	77.695	ENSMAUG00000021253	Cpsf4	100	79.182	Mesocricetus_auratus
ENSSMAG00000006374	cpsf4	100	77.695	ENSMICG00000017429	CPSF4	100	79.182	Microcebus_murinus
ENSSMAG00000006374	cpsf4	100	77.695	ENSMOCG00000014901	Cpsf4	100	79.182	Microtus_ochrogaster
ENSSMAG00000006374	cpsf4	100	84.962	ENSMMOG00000001813	cpsf4	100	84.962	Mola_mola
ENSSMAG00000006374	cpsf4	100	78.067	ENSMODG00000001367	CPSF4	100	80.297	Monodelphis_domestica
ENSSMAG00000006374	cpsf4	100	83.459	ENSMALG00000012611	cpsf4	100	83.459	Monopterus_albus
ENSSMAG00000006374	cpsf4	100	86.531	MGP_CAROLIEiJ_G0028012	Cpsf4	100	86.531	Mus_caroli
ENSSMAG00000006374	cpsf4	100	86.531	ENSMUSG00000029625	Cpsf4	100	86.531	Mus_musculus
ENSSMAG00000006374	cpsf4	100	86.531	MGP_PahariEiJ_G0024581	Cpsf4	100	86.531	Mus_pahari
ENSSMAG00000006374	cpsf4	100	86.531	MGP_SPRETEiJ_G0029013	Cpsf4	100	86.531	Mus_spretus
ENSSMAG00000006374	cpsf4	100	77.695	ENSMPUG00000016508	CPSF4	100	79.182	Mustela_putorius_furo
ENSSMAG00000006374	cpsf4	86	85.782	ENSMLUG00000010980	CPSF4	100	85.782	Myotis_lucifugus
ENSSMAG00000006374	cpsf4	100	77.695	ENSNGAG00000001567	Cpsf4	100	79.182	Nannospalax_galili
ENSSMAG00000006374	cpsf4	90	83.884	ENSNBRG00000003943	cpsf4	98	83.884	Neolamprologus_brichardi
ENSSMAG00000006374	cpsf4	100	86.235	ENSNLEG00000011074	CPSF4	100	86.235	Nomascus_leucogenys
ENSSMAG00000006374	cpsf4	100	78.067	ENSMEUG00000006955	CPSF4	100	80.297	Notamacropus_eugenii
ENSSMAG00000006374	cpsf4	100	77.323	ENSOPRG00000013663	CPSF4	100	78.810	Ochotona_princeps
ENSSMAG00000006374	cpsf4	100	65.476	ENSODEG00000009779	-	100	65.476	Octodon_degus
ENSSMAG00000006374	cpsf4	98	73.444	ENSODEG00000018283	-	91	73.444	Octodon_degus
ENSSMAG00000006374	cpsf4	100	77.695	ENSODEG00000011181	-	100	79.182	Octodon_degus
ENSSMAG00000006374	cpsf4	100	85.283	ENSONIG00000008495	cpsf4	100	85.283	Oreochromis_niloticus
ENSSMAG00000006374	cpsf4	86	77.778	ENSOANG00000007729	CPSF4	100	77.778	Ornithorhynchus_anatinus
ENSSMAG00000006374	cpsf4	100	51.799	ENSOANG00000009568	-	100	51.799	Ornithorhynchus_anatinus
ENSSMAG00000006374	cpsf4	100	77.323	ENSOCUG00000002437	CPSF4	70	78.810	Oryctolagus_cuniculus
ENSSMAG00000006374	cpsf4	100	82.707	ENSORLG00000022798	cpsf4	100	82.707	Oryzias_latipes
ENSSMAG00000006374	cpsf4	100	82.707	ENSORLG00020008548	cpsf4	100	82.707	Oryzias_latipes_hni
ENSSMAG00000006374	cpsf4	100	82.331	ENSORLG00015019575	cpsf4	100	82.331	Oryzias_latipes_hsok
ENSSMAG00000006374	cpsf4	100	82.707	ENSOMEG00000005176	cpsf4	100	82.707	Oryzias_melastigma
ENSSMAG00000006374	cpsf4	100	77.695	ENSOGAG00000010884	CPSF4	100	79.182	Otolemur_garnettii
ENSSMAG00000006374	cpsf4	100	69.597	ENSOARG00000018668	CPSF4	100	69.597	Ovis_aries
ENSSMAG00000006374	cpsf4	100	77.695	ENSPPAG00000043355	CPSF4	100	79.554	Pan_paniscus
ENSSMAG00000006374	cpsf4	100	77.695	ENSPPRG00000003134	CPSF4	100	79.182	Panthera_pardus
ENSSMAG00000006374	cpsf4	89	76.860	ENSPTIG00000005604	CPSF4	90	78.512	Panthera_tigris_altaica
ENSSMAG00000006374	cpsf4	100	77.695	ENSPTRG00000019453	CPSF4	100	79.554	Pan_troglodytes
ENSSMAG00000006374	cpsf4	100	80.894	ENSPANG00000023123	CPSF4	100	80.894	Papio_anubis
ENSSMAG00000006374	cpsf4	100	77.737	ENSPKIG00000014278	cpsf4	100	77.737	Paramormyrops_kingsleyae
ENSSMAG00000006374	cpsf4	79	62.069	ENSPSIG00000018198	-	100	62.069	Pelodiscus_sinensis
ENSSMAG00000006374	cpsf4	78	74.537	ENSPSIG00000011229	CPSF4	100	76.852	Pelodiscus_sinensis
ENSSMAG00000006374	cpsf4	100	83.197	ENSPMGG00000017735	cpsf4	100	83.197	Periophthalmus_magnuspinnatus
ENSSMAG00000006374	cpsf4	100	77.695	ENSPEMG00000004508	Cpsf4	100	79.182	Peromyscus_maniculatus_bairdii
ENSSMAG00000006374	cpsf4	100	78.067	ENSPCIG00000024776	CPSF4	100	80.297	Phascolarctos_cinereus
ENSSMAG00000006374	cpsf4	100	84.151	ENSPFOG00000014912	cpsf4	100	84.151	Poecilia_formosa
ENSSMAG00000006374	cpsf4	100	83.806	ENSPLAG00000009599	cpsf4	100	83.806	Poecilia_latipinna
ENSSMAG00000006374	cpsf4	100	84.151	ENSPMEG00000009790	cpsf4	100	84.151	Poecilia_mexicana
ENSSMAG00000006374	cpsf4	100	83.774	ENSPREG00000018166	cpsf4	100	83.774	Poecilia_reticulata
ENSSMAG00000006374	cpsf4	86	75.641	ENSPPYG00000017378	CPSF4	100	77.778	Pongo_abelii
ENSSMAG00000006374	cpsf4	100	77.323	ENSPCAG00000001892	CPSF4	100	78.810	Procavia_capensis
ENSSMAG00000006374	cpsf4	100	77.695	ENSPCOG00000012771	CPSF4	100	79.182	Propithecus_coquereli
ENSSMAG00000006374	cpsf4	100	72.491	ENSPVAG00000007531	CPSF4	100	73.978	Pteropus_vampyrus
ENSSMAG00000006374	cpsf4	100	84.962	ENSPNYG00000018559	cpsf4	100	84.962	Pundamilia_nyererei
ENSSMAG00000006374	cpsf4	100	79.779	ENSPNAG00000003736	cpsf4	100	81.481	Pygocentrus_nattereri
ENSSMAG00000006374	cpsf4	100	86.531	ENSRNOG00000000985	Cpsf4	100	86.531	Rattus_norvegicus
ENSSMAG00000006374	cpsf4	86	76.068	ENSRBIG00000033886	CPSF4	100	78.205	Rhinopithecus_bieti
ENSSMAG00000006374	cpsf4	100	86.235	ENSRROG00000040431	CPSF4	100	86.235	Rhinopithecus_roxellana
ENSSMAG00000006374	cpsf4	100	77.695	ENSSBOG00000020493	CPSF4	100	86.598	Saimiri_boliviensis_boliviensis
ENSSMAG00000006374	cpsf4	100	78.067	ENSSHAG00000011533	CPSF4	100	80.297	Sarcophilus_harrisii
ENSSMAG00000006374	cpsf4	100	78.261	ENSSFOG00015007883	cpsf4	100	78.261	Scleropages_formosus
ENSSMAG00000006374	cpsf4	100	85.714	ENSSDUG00000018887	cpsf4	100	85.714	Seriola_dumerili
ENSSMAG00000006374	cpsf4	100	85.338	ENSSLDG00000019078	cpsf4	100	85.338	Seriola_lalandi_dorsalis
ENSSMAG00000006374	cpsf4	86	76.068	ENSSARG00000012416	CPSF4	100	77.778	Sorex_araneus
ENSSMAG00000006374	cpsf4	95	62.241	ENSSPUG00000014803	-	97	62.241	Sphenodon_punctatus
ENSSMAG00000006374	cpsf4	100	78.439	ENSSPUG00000003549	CPSF4	100	78.439	Sphenodon_punctatus
ENSSMAG00000006374	cpsf4	100	91.393	ENSSPAG00000006174	cpsf4	100	91.393	Stegastes_partitus
ENSSMAG00000006374	cpsf4	100	86.122	ENSSSCG00000026896	CPSF4	100	86.122	Sus_scrofa
ENSSMAG00000006374	cpsf4	100	84.739	ENSTGUG00000007552	CPSF4	100	84.739	Taeniopygia_guttata
ENSSMAG00000006374	cpsf4	100	82.890	ENSTRUG00000024220	cpsf4	100	82.890	Takifugu_rubripes
ENSSMAG00000006374	cpsf4	100	83.650	ENSTNIG00000006265	cpsf4	100	83.650	Tetraodon_nigroviridis
ENSSMAG00000006374	cpsf4	86	68.803	ENSTBEG00000011406	CPSF4	100	69.231	Tupaia_belangeri
ENSSMAG00000006374	cpsf4	82	95.455	ENSTTRG00000003007	CPSF4	79	95.455	Tursiops_truncatus
ENSSMAG00000006374	cpsf4	91	85.650	ENSUAMG00000008051	CPSF4	85	85.650	Ursus_americanus
ENSSMAG00000006374	cpsf4	100	86.531	ENSUMAG00000009474	CPSF4	100	86.531	Ursus_maritimus
ENSSMAG00000006374	cpsf4	100	86.122	ENSVVUG00000008824	CPSF4	100	86.122	Vulpes_vulpes
ENSSMAG00000006374	cpsf4	99	59.398	ENSXETG00000004641	cpsf4l	99	59.398	Xenopus_tropicalis
ENSSMAG00000006374	cpsf4	100	72.043	ENSXETG00000009892	cpsf4	100	74.552	Xenopus_tropicalis
ENSSMAG00000006374	cpsf4	100	83.774	ENSXCOG00000016040	cpsf4	100	83.774	Xiphophorus_couchianus
ENSSMAG00000006374	cpsf4	100	84.151	ENSXMAG00000024670	cpsf4	100	84.151	Xiphophorus_maculatus